Wall clock time and date at job start Tue Mar 31 2020 16:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99691 * 2 1 4 4 C 1.53003 * 109.47091 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46863 * 65.00012 * 4 3 2 6 6 C 1.46512 * 119.99611 * 262.85669 * 5 4 3 7 7 C 1.50701 * 109.46909 * 270.00083 * 6 5 4 8 8 H 1.07994 * 120.00185 * 0.02562 * 7 6 5 9 9 C 1.37874 * 119.99691 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00261 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 120.00122 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47338 * 120.00012 * 11 9 7 14 14 H 1.48501 * 109.47342 * 240.00209 * 11 9 7 15 15 C 1.34770 * 120.00374 * 82.86261 * 5 4 3 16 16 O 1.21516 * 119.99992 * 183.16778 * 15 5 4 17 17 C 1.48168 * 120.00172 * 3.15908 * 15 5 4 18 18 C 1.39308 * 119.72796 * 173.18880 * 17 15 5 19 19 C 1.38586 * 119.06118 * 180.27502 * 18 17 15 20 20 C 1.38630 * 118.48457 * 359.46055 * 19 18 17 21 21 C 1.38552 * 119.35392 * 0.27754 * 20 19 18 22 22 C 1.50711 * 119.54804 * 179.97438 * 21 20 19 23 23 F 1.39893 * 109.47320 * 89.99573 * 22 21 20 24 24 F 1.39896 * 109.46557 * 209.99893 * 22 21 20 25 25 F 1.39897 * 109.46788 * 329.99587 * 22 21 20 26 26 N 1.31526 * 120.90672 * 359.97438 * 21 20 19 27 27 H 1.09000 * 109.47015 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47469 * 300.00015 * 1 2 3 29 29 H 1.08998 * 109.47341 * 60.00365 * 1 2 3 30 30 H 1.08998 * 109.47050 * 59.99581 * 3 2 1 31 31 H 1.09000 * 109.46820 * 300.00098 * 3 2 1 32 32 H 1.09000 * 109.46634 * 304.99875 * 4 3 2 33 33 H 1.08995 * 109.47065 * 184.99521 * 4 3 2 34 34 H 1.08994 * 109.46755 * 30.00421 * 6 5 4 35 35 H 1.08998 * 109.46527 * 150.00447 * 6 5 4 36 36 H 0.96993 * 120.00447 * 179.97438 * 10 9 7 37 37 H 1.07997 * 120.46795 * 0.03872 * 18 17 15 38 38 H 1.07994 * 120.75755 * 179.73759 * 19 18 17 39 39 H 1.08005 * 120.32041 * 180.29572 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2509 6 6 4.2570 -0.8732 -1.2966 7 6 5.7063 -1.1132 -0.9606 8 1 6.3537 -0.2787 -0.7351 9 6 6.2055 -2.3982 -0.9401 10 7 5.4170 -3.4145 -1.2142 11 14 8.0018 -2.6959 -0.5229 12 1 8.6700 -1.3967 -0.2565 13 1 8.0937 -3.5569 0.6834 14 1 8.6700 -3.3705 -1.6646 15 6 4.1247 1.3152 -2.3600 16 8 4.4348 0.7913 -3.4117 17 6 3.9092 2.7798 -2.2972 18 6 4.2007 3.5692 -3.4075 19 6 3.9994 4.9382 -3.3316 20 6 3.5025 5.4690 -2.1513 21 6 3.2294 4.6234 -1.0883 22 6 2.6896 5.1959 0.1972 23 9 1.2916 5.2115 0.1500 24 9 3.1112 4.4064 1.2723 25 9 3.1653 6.5011 0.3622 26 7 3.4345 3.3279 -1.1856 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6884 1.8464 0.8899 31 1 1.6885 1.8464 -0.8900 32 1 3.8507 0.5687 0.8427 33 1 3.9783 2.1767 0.0901 34 1 3.6259 -1.3896 -0.5734 35 1 4.0483 -1.2523 -2.2971 36 1 5.7683 -4.3185 -1.2001 37 1 4.5818 3.1210 -4.3132 38 1 4.2202 5.5764 -4.1744 39 1 3.3298 6.5314 -2.0613 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590629552.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:05 Heat of formation + Delta-G solvation = -188.569466 kcal Electronic energy + Delta-G solvation = -29838.608484 eV Core-core repulsion = 25139.025319 eV Total energy + Delta-G solvation = -4699.583165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -51.21538 -48.73631 -48.68002 -42.06411 -40.12677 -38.81752 -36.74222 -34.93751 -33.91823 -33.35551 -31.07865 -29.22154 -27.79247 -27.15374 -26.26902 -24.51380 -23.97912 -23.56178 -21.13066 -19.63239 -19.58758 -19.25121 -18.68847 -18.36535 -17.66478 -17.38714 -17.09271 -16.80441 -16.63787 -16.28724 -16.15063 -15.63359 -15.49909 -15.44338 -15.10956 -15.00270 -14.85997 -14.84348 -14.81960 -14.49223 -14.19220 -14.00475 -13.66782 -13.28384 -13.12623 -13.05505 -12.82537 -12.75282 -12.58179 -12.22352 -12.02054 -11.70490 -11.34649 -11.17577 -10.65689 -10.64064 -10.55693 -10.40840 -9.48725 -8.21224 -6.36935 -0.63949 -0.21461 1.31858 1.36867 1.38961 1.51091 1.61304 2.08064 2.37382 2.43203 2.50156 2.76761 2.95844 3.08094 3.23491 3.31469 3.68147 3.71673 3.81301 4.03163 4.18519 4.24301 4.27745 4.42620 4.49956 4.53960 4.67865 4.79500 4.80251 4.86551 5.03787 5.10908 5.22898 5.31377 5.53887 5.79689 6.04879 6.20835 6.28899 6.64338 6.72154 7.15784 7.35388 8.86723 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.012971 B = 0.004223 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.147500 B = 6628.909927 C = 7306.495048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.419 6.419 3 C 0.070 3.930 4 C 0.110 3.890 5 N -0.571 5.571 6 C 0.269 3.731 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.972 3.028 12 H -0.267 1.267 13 H -0.270 1.270 14 H -0.277 1.277 15 C 0.544 3.456 16 O -0.579 6.579 17 C 0.073 3.927 18 C -0.086 4.086 19 C -0.051 4.051 20 C -0.088 4.088 21 C 0.012 3.988 22 C 0.530 3.470 23 F -0.171 7.171 24 F -0.173 7.173 25 F -0.161 7.161 26 N -0.433 5.433 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.024 0.976 35 H -0.001 1.001 36 H 0.268 0.732 37 H 0.158 0.842 38 H 0.205 0.795 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.966 24.301 0.891 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.338 6.338 3 C -0.007 4.007 4 C -0.013 4.013 5 N -0.299 5.299 6 C 0.148 3.852 7 C -0.584 4.584 8 H 0.071 0.929 9 C -0.190 4.190 10 N -0.566 5.566 11 Si 0.796 3.204 12 H -0.191 1.191 13 H -0.195 1.195 14 H -0.203 1.203 15 C 0.331 3.669 16 O -0.459 6.459 17 C -0.065 4.065 18 C -0.106 4.106 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.129 4.129 22 C 0.474 3.526 23 F -0.152 7.152 24 F -0.154 7.154 25 F -0.142 7.142 26 N -0.146 5.146 27 H 0.106 0.894 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.150 0.850 34 H 0.042 0.958 35 H 0.017 0.983 36 H 0.077 0.923 37 H 0.175 0.825 38 H 0.222 0.778 39 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -7.913 23.081 1.111 24.425 hybrid contribution 0.568 -0.283 -0.208 0.668 sum -7.345 22.797 0.903 23.968 Atomic orbital electron populations 1.22858 0.80022 1.03290 1.00584 1.88007 1.21238 1.29129 1.95469 1.22833 0.93430 0.83918 1.00552 1.22206 0.93321 1.00446 0.85297 1.48072 1.61937 1.09916 1.09967 1.18781 0.95152 0.75513 0.95750 1.21704 0.95833 0.92908 1.47943 0.92893 1.25881 1.03006 0.95430 0.94713 1.70082 1.37636 0.99486 1.49427 0.85312 0.78668 0.78356 0.78110 1.19112 1.19508 1.20306 1.18420 0.78367 0.86232 0.83857 1.90720 1.50907 1.73614 1.30693 1.20976 1.00828 0.93382 0.91324 1.22545 0.94414 0.95326 0.98341 1.22167 0.93338 0.93210 0.98945 1.22495 0.93917 1.03025 0.91368 1.21348 1.04422 0.91474 0.95626 1.17727 0.75720 0.75857 0.83266 1.93243 1.29161 1.96282 1.96529 1.93236 1.89773 1.74278 1.58116 1.93228 1.88081 1.37034 1.95843 1.67481 1.09949 1.12288 1.24861 0.89396 0.92224 0.94114 0.90731 0.93844 0.91644 0.84997 0.95837 0.98289 0.92349 0.82477 0.77850 0.79014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.42 -16.23 10.41 -148.98 -1.55 -17.78 16 3 C 0.07 2.38 5.51 71.98 0.40 2.78 16 4 C 0.11 4.30 5.37 86.38 0.46 4.76 16 5 N -0.57 -27.35 2.42 -829.20 -2.01 -29.36 16 6 C 0.27 15.72 5.15 85.63 0.44 16.17 16 7 C -0.55 -33.06 9.39 25.60 0.24 -32.82 16 8 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 9 C 0.01 0.52 5.46 84.65 0.46 0.99 16 10 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 11 Si 0.97 46.22 29.54 68.60 2.03 48.25 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 15 C 0.54 24.58 7.59 86.88 0.66 25.23 16 16 O -0.58 -30.39 15.90 -3.77 -0.06 -30.45 16 17 C 0.07 2.35 6.49 41.91 0.27 2.62 16 18 C -0.09 -1.97 9.63 22.61 0.22 -1.75 16 19 C -0.05 -0.62 10.17 22.45 0.23 -0.40 16 20 C -0.09 -1.09 9.44 22.44 0.21 -0.88 16 21 C 0.01 0.25 6.30 42.68 0.27 0.52 16 22 C 0.53 10.01 3.43 71.24 0.24 10.26 16 23 F -0.17 -3.27 17.30 44.97 0.78 -2.49 16 24 F -0.17 -3.95 17.03 44.97 0.77 -3.18 16 25 F -0.16 -2.47 16.44 44.97 0.74 -1.73 16 26 N -0.43 -12.13 4.02 -173.07 -0.70 -12.83 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.04 1.47 6.90 -2.39 -0.02 1.45 16 32 H 0.07 2.73 8.02 -2.39 -0.02 2.71 16 33 H 0.13 4.63 5.24 -2.89 -0.02 4.62 16 34 H 0.02 1.45 7.83 -2.39 -0.02 1.43 16 35 H 0.00 -0.07 7.38 -2.39 -0.02 -0.08 16 36 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.16 3.66 7.66 -2.91 -0.02 3.64 16 38 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.19 0.82 7.60 -2.91 -0.02 0.80 16 Total: -1.00 -80.04 349.97 6.73 -73.31 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: 1.09 Total: 4.55 kcal Atomic # 6 Polarization: 24.17 SS G_CDS: 5.35 Total: 29.53 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -2.42 Total: -100.01 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.61 Total: -48.23 kcal Atomic # 9 Polarization: -9.69 SS G_CDS: 2.28 Total: -7.41 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -80.04 6.73 -73.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590629552.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.255 kcal (2) G-P(sol) polarization free energy of solvation -80.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds