Wall clock time and date at job start Tue Mar 31 2020 16:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35937 * 117.00351 * 2 1 4 4 C 1.38598 * 120.08268 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.01399 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.17385 * 0.02562 * 5 4 3 7 7 C 1.38180 * 120.16936 * 359.97438 * 6 5 4 8 8 C 1.38714 * 119.98793 * 0.02562 * 7 6 5 9 9 N 1.40325 * 120.08459 * 180.02562 * 8 7 6 10 10 N 1.40596 * 127.40263 * 227.67112 * 9 8 7 11 11 N 1.28893 * 106.85243 * 179.83493 * 10 9 8 12 12 N 1.28416 * 110.40438 * 0.44921 * 11 10 9 13 13 C 1.31583 * 110.50492 * 359.70769 * 12 11 10 14 14 S 1.76201 * 126.47508 * 179.97438 * 13 12 11 15 15 C 1.80998 * 100.00162 * 5.09335 * 14 13 12 16 16 C 1.52997 * 109.47189 * 184.67380 * 15 14 13 17 17 C 1.50707 * 115.55128 * 278.36793 * 16 15 14 18 18 H 1.07992 * 119.99913 * 115.19827 * 17 16 15 19 19 C 1.37875 * 119.99723 * 295.19571 * 17 16 15 20 20 N 1.31514 * 120.00145 * 352.99568 * 19 17 16 21 21 Si 1.86797 * 119.99945 * 172.99293 * 19 17 16 22 22 H 1.48499 * 109.47048 * 90.00354 * 21 19 17 23 23 H 1.48497 * 109.47283 * 210.00223 * 21 19 17 24 24 H 1.48498 * 109.47288 * 330.00215 * 21 19 17 25 25 C 1.53003 * 117.49977 * 132.65652 * 16 15 14 26 26 C 1.53003 * 60.00037 * 252.51049 * 25 16 15 27 27 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46892 * 299.99770 * 1 2 3 29 29 H 1.08991 * 109.47396 * 59.99810 * 1 2 3 30 30 H 1.08003 * 119.99013 * 0.04556 * 4 3 2 31 31 H 1.07999 * 119.91165 * 179.72441 * 5 4 3 32 32 H 1.08001 * 119.91810 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.00313 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47292 * 304.67173 * 15 14 13 35 35 H 1.08995 * 109.47149 * 64.67438 * 15 14 13 36 36 H 0.96999 * 119.99958 * 185.01416 * 20 19 17 37 37 H 1.09000 * 117.50094 * 0.02562 * 25 16 15 38 38 H 1.09004 * 117.49565 * 145.02201 * 25 16 15 39 39 H 1.09005 * 117.49605 * 252.51050 * 26 25 16 40 40 H 1.08997 * 117.51795 * 107.48521 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9221 3.6053 -0.0011 6 6 3.3030 3.6801 -0.0016 7 6 4.0610 2.5248 -0.0011 8 6 3.4369 1.2860 -0.0005 9 7 4.2047 0.1115 0.0005 10 7 4.0429 -1.0154 -0.8245 11 7 4.9603 -1.8572 -0.4915 12 7 5.6775 -1.3836 0.4627 13 6 5.2588 -0.1832 0.8019 14 16 5.9385 0.8466 2.0597 15 6 7.3672 -0.1526 2.5462 16 6 8.0669 0.5042 3.7377 17 6 9.0086 1.6308 3.3983 18 1 8.7922 2.6346 3.7325 19 6 10.1465 1.3798 2.6613 20 7 10.4828 0.1417 2.3721 21 14 11.2104 2.7982 2.0736 22 1 12.2412 3.1016 3.0985 23 1 11.8746 2.4239 0.7993 24 1 10.3612 3.9968 1.8556 25 6 8.4340 -0.3913 4.9228 26 6 7.2830 0.6091 5.0474 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2144 2.3196 -0.0002 31 1 1.3336 4.5109 -0.0060 32 1 3.7902 4.6440 -0.0016 33 1 5.1393 2.5864 -0.0011 34 1 7.0333 -1.1516 2.8264 35 1 8.0628 -0.2232 1.7100 36 1 11.3201 -0.0397 1.9171 37 1 8.1773 -1.4483 4.8535 38 1 9.3569 -0.1657 5.4572 39 1 7.4487 1.4927 5.6638 40 1 6.2685 0.2105 5.0602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594881317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:44 Heat of formation + Delta-G solvation = 138.310557 kcal Electronic energy + Delta-G solvation = -25545.878364 eV Core-core repulsion = 21877.372143 eV Total energy + Delta-G solvation = -3668.506221 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.63379 -40.46768 -37.84198 -36.73513 -34.92384 -32.12625 -31.91169 -30.65928 -30.15905 -27.81307 -27.58636 -25.50886 -24.84006 -23.28187 -22.28585 -21.92007 -21.27226 -19.50843 -18.90074 -17.87312 -17.03007 -16.77229 -16.08138 -16.02109 -15.78434 -15.24637 -14.75120 -14.62103 -14.19509 -13.99791 -13.93438 -13.49082 -13.17154 -12.77882 -12.64201 -12.23290 -12.14528 -12.02572 -11.69610 -11.51016 -11.46255 -11.13858 -11.06448 -10.97188 -10.81419 -10.58372 -10.43212 -10.38127 -10.10984 -9.66157 -9.21161 -9.05199 -8.67468 -8.51222 -8.18649 -7.39840 -6.14060 -4.22037 0.51950 1.01713 1.22342 1.41427 2.27473 2.55001 2.77753 2.89145 3.23751 3.30672 3.32525 3.34337 4.31588 4.36075 4.44879 4.72497 4.78463 4.83441 4.89652 5.00131 5.05789 5.10936 5.18820 5.31012 5.35612 5.41753 5.64262 5.82024 5.84950 5.97287 6.10393 6.12729 6.25364 6.27168 6.44063 6.47906 6.60933 6.76763 6.97072 7.02864 7.26773 7.32827 7.78815 8.23793 8.72200 8.78183 9.43993 10.93301 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.003721 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.286018 B = 7523.325024 C = 8074.800982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.300 6.300 3 C 0.151 3.849 4 C -0.202 4.202 5 C -0.065 4.065 6 C -0.138 4.138 7 C -0.062 4.062 8 C 0.096 3.904 9 N -0.320 5.320 10 N -0.078 5.078 11 N -0.039 5.039 12 N -0.331 5.331 13 C 0.225 3.775 14 S 0.034 5.966 15 C -0.048 4.048 16 C 0.053 3.947 17 C -0.500 4.500 18 H 0.064 0.936 19 C 0.074 3.926 20 N -0.873 5.873 21 Si 0.889 3.111 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.271 1.271 25 C -0.156 4.156 26 C -0.206 4.206 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.135 0.865 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.264 0.736 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.917 6.475 -3.437 20.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.103 3.897 4 C -0.221 4.221 5 C -0.084 4.084 6 C -0.156 4.156 7 C -0.083 4.083 8 C 0.003 3.997 9 N -0.114 5.114 10 N -0.064 5.064 11 N -0.035 5.035 12 N -0.187 5.187 13 C -0.157 4.157 14 S 0.263 5.737 15 C -0.196 4.196 16 C 0.050 3.950 17 C -0.537 4.537 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.509 5.509 21 Si 0.717 3.283 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.195 1.195 25 C -0.196 4.196 26 C -0.244 4.244 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.157 0.843 31 H 0.153 0.847 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.133 5.913 -4.016 20.425 hybrid contribution 0.710 0.294 -0.459 0.895 sum -18.423 6.206 -4.475 19.949 Atomic orbital electron populations 1.23138 0.77916 1.04428 1.01386 1.86257 1.21658 1.25622 1.87686 1.18817 0.89997 0.85629 0.95282 1.21160 1.00324 0.91456 1.09142 1.21136 0.94714 0.97184 0.95350 1.20993 0.93563 0.98107 1.02985 1.21164 1.01766 0.89497 0.95872 1.16767 0.86747 0.83386 1.12771 1.48419 1.23254 1.14049 1.25700 1.82546 1.19203 0.90770 1.13834 1.77795 0.99327 1.20088 1.06242 1.75048 1.24500 1.06570 1.12603 1.28593 0.90661 0.97554 0.98900 1.86046 1.30757 1.24520 1.32398 1.23618 0.93406 0.97740 1.04876 1.18521 0.95716 0.97365 0.83351 1.20410 1.06034 0.92871 1.34423 0.91753 1.24987 0.97410 0.95555 0.95074 1.69947 1.22609 1.18264 1.40049 0.86623 0.80538 0.82708 0.78477 1.20561 1.21055 1.19523 1.22789 0.97753 0.94222 1.04845 1.23002 0.95148 1.01918 1.04294 0.87940 0.92392 0.92312 0.84315 0.84728 0.84131 0.83395 0.90748 0.86907 0.92596 0.91361 0.89612 0.89977 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.98 9.77 -19.54 -0.19 -4.17 16 3 C 0.15 1.95 6.69 -39.06 -0.26 1.69 16 4 C -0.20 -1.84 9.04 -39.46 -0.36 -2.20 16 5 C -0.07 -0.52 10.04 -39.57 -0.40 -0.92 16 6 C -0.14 -1.30 10.04 -39.58 -0.40 -1.70 16 7 C -0.06 -0.80 8.92 -39.43 -0.35 -1.15 16 8 C 0.10 1.44 6.20 -83.41 -0.52 0.93 16 9 N -0.32 -5.87 3.57 -10.53 -0.04 -5.91 16 10 N -0.08 -1.53 13.35 60.35 0.81 -0.72 16 11 N -0.04 -0.82 13.37 60.35 0.81 -0.02 16 12 N -0.33 -7.17 11.58 30.56 0.35 -6.82 16 13 C 0.22 4.44 7.99 -88.91 -0.71 3.72 16 14 S 0.03 0.64 20.41 -107.50 -2.19 -1.56 16 15 C -0.05 -1.06 5.07 37.16 0.19 -0.87 16 16 C 0.05 1.22 1.27 -155.65 -0.20 1.02 16 17 C -0.50 -12.60 8.83 -34.44 -0.30 -12.90 16 18 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 19 C 0.07 1.92 5.25 -17.82 -0.09 1.82 16 20 N -0.87 -23.57 12.48 55.43 0.69 -22.88 16 21 Si 0.89 20.08 29.55 -169.99 -5.02 15.05 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C -0.16 -3.38 9.88 -26.73 -0.26 -3.64 16 26 C -0.21 -4.12 9.67 -26.73 -0.26 -4.38 16 27 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.14 0.86 6.30 -52.48 -0.33 0.53 16 31 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 33 H 0.15 1.97 7.46 -52.48 -0.39 1.58 16 34 H 0.07 1.62 7.93 -51.92 -0.41 1.20 16 35 H 0.11 2.82 7.17 -51.92 -0.37 2.45 16 36 H 0.26 6.88 8.32 -40.82 -0.34 6.55 16 37 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 38 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 40 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 361.17 15.07 5.44 5.44 Total: -1.00 -30.40 361.17 -7.08 -37.47 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.80 Total: 1.48 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -2.93 Total: -17.38 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 2.62 Total: -36.34 kcal Atomic # 8 Polarization: -3.98 SS G_CDS: -0.19 Total: -4.17 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 0.64 SS G_CDS: -2.19 Total: -1.56 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.40 -7.08 -37.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594881317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.784 kcal (2) G-P(sol) polarization free energy of solvation -30.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds