Wall clock time and date at job start Tue Mar 31 2020 16:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35937 * 117.00351 * 2 1 4 4 C 1.38598 * 120.08268 * 359.97438 * 3 2 1 5 5 C 1.38205 * 120.01399 * 180.02562 * 4 3 2 6 6 C 1.38296 * 120.17385 * 0.02562 * 5 4 3 7 7 C 1.38180 * 120.16936 * 359.97438 * 6 5 4 8 8 C 1.38714 * 119.98793 * 0.02562 * 7 6 5 9 9 N 1.40325 * 120.08459 * 180.02562 * 8 7 6 10 10 N 1.40596 * 127.40263 * 227.67112 * 9 8 7 11 11 N 1.28893 * 106.85243 * 179.83493 * 10 9 8 12 12 N 1.28416 * 110.40438 * 0.44921 * 11 10 9 13 13 C 1.31583 * 110.50492 * 359.70769 * 12 11 10 14 14 S 1.76201 * 126.47508 * 179.97438 * 13 12 11 15 15 C 1.80998 * 100.00162 * 5.09335 * 14 13 12 16 16 C 1.52997 * 109.47189 * 184.67380 * 15 14 13 17 17 C 1.50707 * 115.55128 * 278.36793 * 16 15 14 18 18 H 1.07992 * 119.99913 * 115.19827 * 17 16 15 19 19 C 1.37875 * 119.99723 * 295.19571 * 17 16 15 20 20 N 1.31514 * 120.00145 * 352.99568 * 19 17 16 21 21 Si 1.86797 * 119.99945 * 172.99293 * 19 17 16 22 22 H 1.48499 * 109.47048 * 90.00354 * 21 19 17 23 23 H 1.48497 * 109.47283 * 210.00223 * 21 19 17 24 24 H 1.48498 * 109.47288 * 330.00215 * 21 19 17 25 25 C 1.53003 * 117.49977 * 132.65652 * 16 15 14 26 26 C 1.53003 * 60.00037 * 252.51049 * 25 16 15 27 27 H 1.09000 * 109.46948 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46892 * 299.99770 * 1 2 3 29 29 H 1.08991 * 109.47396 * 59.99810 * 1 2 3 30 30 H 1.08003 * 119.99013 * 0.04556 * 4 3 2 31 31 H 1.07999 * 119.91165 * 179.72441 * 5 4 3 32 32 H 1.08001 * 119.91810 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.00313 * 180.02562 * 7 6 5 34 34 H 1.08998 * 109.47292 * 304.67173 * 15 14 13 35 35 H 1.08995 * 109.47149 * 64.67438 * 15 14 13 36 36 H 0.96999 * 119.99958 * 185.01416 * 20 19 17 37 37 H 1.09000 * 117.50094 * 0.02562 * 25 16 15 38 38 H 1.09004 * 117.49565 * 145.02201 * 25 16 15 39 39 H 1.09005 * 117.49605 * 252.51050 * 26 25 16 40 40 H 1.08997 * 117.51795 * 107.48521 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2931 2.3747 -0.0005 5 6 1.9221 3.6053 -0.0011 6 6 3.3030 3.6801 -0.0016 7 6 4.0610 2.5248 -0.0011 8 6 3.4369 1.2860 -0.0005 9 7 4.2047 0.1115 0.0005 10 7 4.0429 -1.0154 -0.8245 11 7 4.9603 -1.8572 -0.4915 12 7 5.6775 -1.3836 0.4627 13 6 5.2588 -0.1832 0.8019 14 16 5.9385 0.8466 2.0597 15 6 7.3672 -0.1526 2.5462 16 6 8.0669 0.5042 3.7377 17 6 9.0086 1.6308 3.3983 18 1 8.7922 2.6346 3.7325 19 6 10.1465 1.3798 2.6613 20 7 10.4828 0.1417 2.3721 21 14 11.2104 2.7982 2.0736 22 1 12.2412 3.1016 3.0985 23 1 11.8746 2.4239 0.7993 24 1 10.3612 3.9968 1.8556 25 6 8.4340 -0.3913 4.9228 26 6 7.2830 0.6091 5.0474 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 0.2144 2.3196 -0.0002 31 1 1.3336 4.5109 -0.0060 32 1 3.7902 4.6440 -0.0016 33 1 5.1393 2.5864 -0.0011 34 1 7.0333 -1.1516 2.8264 35 1 8.0628 -0.2232 1.7100 36 1 11.3201 -0.0397 1.9171 37 1 8.1773 -1.4483 4.8535 38 1 9.3569 -0.1657 5.4572 39 1 7.4487 1.4927 5.6638 40 1 6.2685 0.2105 5.0602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594881317.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:43 Heat of formation + Delta-G solvation = 121.462835 kcal Electronic energy + Delta-G solvation = -25546.608936 eV Core-core repulsion = 21877.372143 eV Total energy + Delta-G solvation = -3669.236793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.12667 -41.33207 -38.70487 -38.47475 -36.13984 -34.07334 -33.45341 -31.52833 -31.10079 -29.52387 -28.28047 -27.43387 -26.13786 -24.60131 -23.38399 -22.96282 -22.93473 -21.20233 -20.08972 -18.90946 -18.39732 -18.01681 -17.80408 -16.97190 -16.78639 -16.63790 -15.99581 -15.81770 -15.67612 -15.37224 -15.09207 -14.84828 -14.53663 -14.07201 -13.93904 -13.69522 -13.45499 -13.14585 -13.00631 -12.87741 -12.78775 -12.48265 -12.40214 -12.31078 -12.18009 -12.13247 -12.05754 -11.92406 -11.74464 -11.44830 -10.90559 -10.53251 -10.11940 -9.95699 -9.39196 -8.90652 -8.10028 -6.22348 -0.64029 -0.28471 0.17483 0.26899 0.93978 0.96703 1.15054 1.43858 1.47724 1.55753 2.14379 2.43921 2.48382 3.14113 3.26630 3.53022 3.59687 3.76533 3.94067 4.05541 4.10005 4.13144 4.21679 4.32517 4.33101 4.34966 4.35508 4.56553 4.57242 4.67369 4.70428 4.96970 5.00729 5.05064 5.10515 5.24052 5.30187 5.36711 5.49520 5.60552 5.62441 5.80809 6.23704 6.33878 6.82335 7.17467 7.46190 8.96826 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014600 B = 0.003721 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.286018 B = 7523.325024 C = 8074.800982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.140 3.860 4 C -0.192 4.192 5 C -0.044 4.044 6 C -0.132 4.132 7 C -0.078 4.078 8 C 0.041 3.959 9 N -0.302 5.302 10 N -0.082 5.082 11 N -0.060 5.060 12 N -0.359 5.359 13 C 0.208 3.792 14 S 0.083 5.917 15 C -0.046 4.046 16 C 0.027 3.973 17 C -0.505 4.505 18 H 0.064 0.936 19 C 0.030 3.970 20 N -0.904 5.904 21 Si 0.943 3.057 22 H -0.276 1.276 23 H -0.291 1.291 24 H -0.260 1.260 25 C -0.164 4.164 26 C -0.176 4.176 27 H 0.108 0.892 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.174 0.826 31 H 0.181 0.819 32 H 0.169 0.831 33 H 0.133 0.867 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.261 0.739 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.896 9.663 -3.152 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.250 6.250 3 C 0.092 3.908 4 C -0.211 4.211 5 C -0.062 4.062 6 C -0.151 4.151 7 C -0.099 4.099 8 C -0.050 4.050 9 N -0.096 5.096 10 N -0.068 5.068 11 N -0.056 5.056 12 N -0.216 5.216 13 C -0.174 4.174 14 S 0.312 5.688 15 C -0.195 4.195 16 C 0.024 3.976 17 C -0.543 4.543 18 H 0.082 0.918 19 C -0.171 4.171 20 N -0.541 5.541 21 Si 0.769 3.231 22 H -0.202 1.202 23 H -0.217 1.217 24 H -0.184 1.184 25 C -0.204 4.204 26 C -0.214 4.214 27 H 0.126 0.874 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.191 0.809 31 H 0.198 0.802 32 H 0.187 0.813 33 H 0.151 0.849 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.144 9.126 -3.723 24.238 hybrid contribution 1.416 -0.569 -0.590 1.636 sum -20.728 8.557 -4.313 22.836 Atomic orbital electron populations 1.23453 0.75373 1.05613 1.03257 1.86206 1.24463 1.26498 1.87797 1.19081 0.89384 0.86862 0.95488 1.21615 1.01862 0.90391 1.07250 1.21702 0.94285 0.98408 0.91791 1.21391 0.94406 0.97852 1.01448 1.21230 1.01466 0.90012 0.97168 1.17379 0.87883 0.82617 1.17156 1.48548 1.22593 1.14395 1.24033 1.82421 1.18874 0.91432 1.14077 1.77753 0.99991 1.20949 1.06880 1.74944 1.25511 1.07785 1.13348 1.28649 0.91719 0.97390 0.99666 1.85631 1.28261 1.22935 1.32002 1.23265 0.94417 0.98386 1.03421 1.18560 0.97014 0.97598 0.84428 1.20688 1.06273 0.93466 1.33870 0.91806 1.25643 0.98767 0.97330 0.95385 1.70069 1.22894 1.19981 1.41198 0.85766 0.79180 0.80539 0.77605 1.20164 1.21747 1.18401 1.22749 0.98248 0.94932 1.04492 1.23029 0.95421 1.01304 1.01645 0.87373 0.90441 0.90307 0.80860 0.80180 0.81344 0.84936 0.91205 0.90501 0.93033 0.90775 0.90924 0.89048 0.88821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.33 16 2 O -0.34 -8.56 9.77 -92.84 -0.91 -9.47 16 3 C 0.14 3.37 6.69 22.60 0.15 3.52 16 4 C -0.19 -2.70 9.04 22.35 0.20 -2.50 16 5 C -0.04 -0.47 10.04 22.28 0.22 -0.25 16 6 C -0.13 -2.03 10.04 22.27 0.22 -1.80 16 7 C -0.08 -1.91 8.92 22.37 0.20 -1.71 16 8 C 0.04 1.21 6.20 38.14 0.24 1.45 16 9 N -0.30 -11.33 3.57 -187.23 -0.67 -12.00 16 10 N -0.08 -3.34 13.35 37.02 0.49 -2.84 16 11 N -0.06 -2.67 13.37 37.02 0.50 -2.18 16 12 N -0.36 -16.28 11.58 -57.23 -0.66 -16.94 16 13 C 0.21 8.46 7.99 179.75 1.44 9.90 16 14 S 0.08 3.15 20.41 -56.49 -1.15 2.00 16 15 C -0.05 -2.08 5.07 71.98 0.36 -1.71 16 16 C 0.03 1.23 1.27 -52.92 -0.07 1.17 16 17 C -0.51 -25.57 8.83 25.60 0.23 -25.35 16 18 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 19 C 0.03 1.57 5.25 84.65 0.44 2.02 16 20 N -0.90 -50.35 12.48 21.45 0.27 -50.08 16 21 Si 0.94 41.47 29.55 68.60 2.03 43.49 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 25 C -0.16 -7.15 9.88 30.60 0.30 -6.85 16 26 C -0.18 -6.83 9.67 30.60 0.30 -6.54 16 27 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 29 H 0.08 0.68 7.66 -2.39 -0.02 0.66 16 30 H 0.17 1.18 6.30 -2.91 -0.02 1.17 16 31 H 0.18 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.13 3.56 7.46 -2.91 -0.02 3.53 16 34 H 0.07 3.15 7.93 -2.40 -0.02 3.13 16 35 H 0.08 4.03 7.17 -2.40 -0.02 4.02 16 36 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 37 H 0.07 3.10 8.07 -2.39 -0.02 3.08 16 38 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 39 H 0.09 3.37 8.14 -2.38 -0.02 3.35 16 40 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 Total: -1.00 -69.57 361.17 6.31 -63.26 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: 1.07 Total: 12.09 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 5.35 Total: -27.33 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -0.07 Total: -84.05 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.91 Total: -9.47 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.15 Total: 2.00 kcal Total: -69.57 6.31 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594881317.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.722 kcal (2) G-P(sol) polarization free energy of solvation -69.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds