Wall clock time and date at job start Tue Mar 31 2020 16:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99547 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47111 * 65.00157 * 4 3 2 6 6 C 1.46499 * 120.00424 * 264.89514 * 5 4 3 7 7 C 1.50704 * 109.46494 * 262.72346 * 6 5 4 8 8 H 1.07998 * 120.00302 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00150 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99853 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47569 * 90.00141 * 11 9 7 13 13 H 1.48498 * 109.47351 * 210.00256 * 11 9 7 14 14 H 1.48506 * 109.47438 * 330.00080 * 11 9 7 15 15 C 1.34780 * 119.99776 * 84.88316 * 5 4 3 16 16 O 1.21518 * 120.00041 * 3.01119 * 15 5 4 17 17 C 1.48175 * 119.99841 * 183.00759 * 15 5 4 18 18 C 1.39310 * 119.72100 * 173.16060 * 17 15 5 19 19 C 1.38584 * 119.05912 * 180.27928 * 18 17 15 20 20 C 1.50701 * 120.75652 * 179.70311 * 19 18 17 21 21 F 1.39902 * 109.47019 * 90.00233 * 20 19 18 22 22 F 1.39902 * 109.47016 * 209.99557 * 20 19 18 23 23 F 1.39894 * 109.47073 * 329.99703 * 20 19 18 24 24 C 1.38635 * 118.48737 * 359.46039 * 19 18 17 25 25 C 1.38557 * 119.34663 * 0.51933 * 24 19 18 26 26 N 1.31514 * 120.90717 * 359.74683 * 25 24 19 27 27 H 1.09008 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47335 * 299.99196 * 1 2 3 29 29 H 1.08996 * 109.47653 * 60.00135 * 1 2 3 30 30 H 1.09002 * 109.47316 * 60.00357 * 3 2 1 31 31 H 1.08997 * 109.47874 * 300.00432 * 3 2 1 32 32 H 1.09000 * 109.47643 * 305.00912 * 4 3 2 33 33 H 1.08998 * 109.47654 * 185.00172 * 4 3 2 34 34 H 1.09003 * 109.46945 * 22.71650 * 6 5 4 35 35 H 1.08991 * 109.47796 * 142.72287 * 6 5 4 36 36 H 0.97005 * 120.00241 * 179.97438 * 10 9 7 37 37 H 1.08004 * 120.47259 * 0.02562 * 18 17 15 38 38 H 1.08000 * 120.32242 * 180.27218 * 24 19 18 39 39 H 1.08001 * 119.54365 * 179.76681 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.2141 -0.8803 -1.3084 7 6 5.6851 -1.1549 -1.1300 8 1 6.3742 -0.3354 -0.9883 9 6 6.1513 -2.4523 -1.1475 10 7 7.4350 -2.6920 -0.9923 11 14 4.9594 -3.8698 -1.3918 12 1 4.8268 -4.1609 -2.8419 13 1 5.4718 -5.0740 -0.6900 14 1 3.6318 -3.5014 -0.8375 15 6 4.1639 1.3222 -2.3495 16 8 4.0198 2.5272 -2.2881 17 6 4.5456 0.6861 -3.6322 18 6 4.5984 1.4524 -4.7944 19 6 4.9513 0.8422 -5.9876 20 6 5.0140 1.6333 -7.2687 21 9 6.3017 2.1553 -7.4318 22 9 4.7096 0.7973 -8.3484 23 9 4.0891 2.6815 -7.2152 24 6 5.2503 -0.5115 -5.9749 25 6 5.1777 -1.2118 -4.7815 26 7 4.8346 -0.6088 -3.6642 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9783 2.1767 0.0902 34 1 3.6536 -1.3725 -0.5137 35 1 3.8875 -1.2641 -2.2748 36 1 7.7630 -3.6048 -1.0043 37 1 4.3636 2.5062 -4.7667 38 1 5.5332 -1.0160 -6.8869 39 1 5.4062 -2.2672 -4.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602899256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:08 Heat of formation + Delta-G solvation = -164.056550 kcal Electronic energy + Delta-G solvation = -29439.658089 eV Core-core repulsion = 24741.137883 eV Total energy + Delta-G solvation = -4698.520205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.25411 -47.77475 -47.70778 -40.51490 -38.78395 -37.47102 -35.24199 -33.29676 -32.46571 -31.46492 -29.89519 -27.58589 -26.67473 -26.19147 -24.48877 -22.87865 -22.42186 -22.17245 -19.69744 -18.58261 -18.56065 -17.87370 -16.99894 -16.81605 -16.19929 -16.00825 -15.89480 -15.51733 -15.16688 -14.84010 -14.60351 -14.52122 -14.39506 -14.25277 -14.15351 -13.97735 -13.87016 -13.81773 -13.39735 -13.09870 -12.58846 -12.45839 -12.17205 -12.05659 -11.94673 -11.67962 -11.53559 -10.98859 -10.79015 -10.65088 -10.17352 -10.06331 -9.78921 -9.51892 -9.44521 -9.11020 -8.74022 -8.43818 -7.76315 -6.06741 -3.99576 0.74231 1.01785 2.50428 3.07511 3.25409 3.34325 3.40446 3.47246 3.64820 3.92984 3.98175 4.03994 4.34665 4.41379 4.50675 4.85112 4.90256 5.05754 5.25322 5.29157 5.31774 5.39005 5.52121 5.52308 5.58238 5.70280 5.71176 5.77720 5.84951 5.97736 6.22390 6.52577 6.62398 7.18209 7.32679 7.40956 7.64797 8.01063 8.09969 8.49696 8.72641 8.96872 9.54772 11.06447 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.004943 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.161735 B = 5663.004128 C = 7277.233660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.558 5.558 6 C 0.201 3.799 7 C -0.497 4.497 8 H 0.069 0.931 9 C 0.076 3.924 10 N -0.900 5.900 11 Si 0.870 3.130 12 H -0.275 1.275 13 H -0.290 1.290 14 H -0.263 1.263 15 C 0.568 3.432 16 O -0.565 6.565 17 C 0.091 3.909 18 C -0.074 4.074 19 C -0.162 4.162 20 C 0.515 3.485 21 F -0.173 7.173 22 F -0.176 7.176 23 F -0.174 7.174 24 C -0.109 4.109 25 C 0.095 3.905 26 N -0.365 5.365 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.034 0.966 35 H 0.070 0.930 36 H 0.262 0.738 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.702 5.028 -7.980 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.031 4.031 4 C -0.004 4.004 5 N -0.285 5.285 6 C 0.080 3.920 7 C -0.537 4.537 8 H 0.087 0.913 9 C -0.125 4.125 10 N -0.540 5.540 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.216 1.216 14 H -0.187 1.187 15 C 0.355 3.645 16 O -0.446 6.446 17 C -0.047 4.047 18 C -0.095 4.095 19 C -0.172 4.172 20 C 0.461 3.539 21 F -0.154 7.154 22 F -0.157 7.157 23 F -0.155 7.155 24 C -0.130 4.130 25 C -0.063 4.063 26 N -0.076 5.076 27 H 0.101 0.899 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.171 0.829 38 H 0.164 0.836 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -9.588 4.869 -7.137 12.906 hybrid contribution -0.442 -0.164 -1.151 1.244 sum -10.030 4.705 -8.288 13.836 Atomic orbital electron populations 1.22690 0.81950 1.02384 0.99414 1.88010 1.18868 1.27721 1.95278 1.23041 0.95006 0.84842 1.00224 1.21487 0.91150 1.00118 0.87691 1.47833 1.61657 1.10933 1.08123 1.20498 0.97574 0.74550 0.99327 1.21222 0.91092 0.93680 1.47657 0.91258 1.24715 0.94675 0.98316 0.94826 1.69908 1.13036 1.20397 1.50619 0.86948 0.82302 0.82298 0.78677 1.20093 1.21643 1.18725 1.17705 0.77846 0.85705 0.83267 1.90699 1.54970 1.13689 1.85261 1.21240 0.99292 0.90384 0.93825 1.21791 0.95027 1.01969 0.90699 1.20181 1.08410 0.95647 0.92921 1.18106 0.73984 0.77744 0.84095 1.93242 1.38761 1.87390 1.96054 1.93190 1.92980 1.71438 1.58110 1.93204 1.66437 1.59350 1.96542 1.22172 0.96875 0.92683 1.01262 1.23169 0.95206 1.01311 0.86650 1.68728 1.03543 1.08724 1.26606 0.89934 0.94476 0.94535 0.92746 0.93084 0.88846 0.89014 0.94857 0.91319 0.92764 0.82878 0.83624 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -6.21 10.32 -35.23 -0.36 -6.57 16 3 C 0.05 0.70 6.25 37.16 0.23 0.93 16 4 C 0.12 2.07 5.73 -4.04 -0.02 2.05 16 5 N -0.56 -11.54 2.44 -176.05 -0.43 -11.97 16 6 C 0.20 4.56 3.71 -5.19 -0.02 4.54 16 7 C -0.50 -13.07 8.49 -34.44 -0.29 -13.36 16 8 H 0.07 2.07 8.06 -52.49 -0.42 1.64 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.90 -26.10 13.96 55.43 0.77 -25.33 16 11 Si 0.87 20.10 27.47 -169.99 -4.67 15.43 16 12 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 15 C 0.57 11.76 7.55 -12.18 -0.09 11.67 16 16 O -0.57 -12.01 15.99 5.35 0.09 -11.92 16 17 C 0.09 1.75 6.62 -83.01 -0.55 1.20 16 18 C -0.07 -1.21 9.00 -39.06 -0.35 -1.56 16 19 C -0.16 -2.32 5.47 -104.35 -0.57 -2.89 16 20 C 0.51 6.61 3.39 36.01 0.12 6.74 16 21 F -0.17 -2.31 17.30 2.25 0.04 -2.27 16 22 F -0.18 -2.11 16.56 2.25 0.04 -2.07 16 23 F -0.17 -2.26 16.55 2.25 0.04 -2.22 16 24 C -0.11 -1.48 9.49 -39.32 -0.37 -1.85 16 25 C 0.09 1.54 11.18 -17.57 -0.20 1.34 16 26 N -0.37 -7.20 4.97 -9.80 -0.05 -7.25 16 27 H 0.08 0.90 8.14 -51.92 -0.42 0.47 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.62 8.03 -51.93 -0.42 1.20 16 33 H 0.09 1.52 7.54 -51.93 -0.39 1.13 16 34 H 0.03 0.78 6.83 -51.93 -0.35 0.43 16 35 H 0.07 1.56 4.69 -52.12 -0.24 1.32 16 36 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.15 2.37 7.30 -52.48 -0.38 1.99 16 38 H 0.15 1.50 7.69 -52.49 -0.40 1.09 16 39 H 0.17 2.48 8.06 -52.49 -0.42 2.06 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -30.79 346.90 -4.73 -35.52 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.32 Total: 1.16 kcal Atomic # 6 Polarization: 13.36 SS G_CDS: -1.10 Total: 12.26 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: 0.30 Total: -44.55 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.28 Total: -18.49 kcal Atomic # 9 Polarization: -6.68 SS G_CDS: 0.11 Total: -6.57 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.67 Total: 15.43 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.79 -4.73 -35.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602899256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.537 kcal (2) G-P(sol) polarization free energy of solvation -30.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds