Wall clock time and date at job start Tue Mar 31 2020 16:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 113.99547 * 2 1 4 4 C 1.52999 * 109.47221 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47111 * 65.00157 * 4 3 2 6 6 C 1.46499 * 120.00424 * 264.89514 * 5 4 3 7 7 C 1.50704 * 109.46494 * 262.72346 * 6 5 4 8 8 H 1.07998 * 120.00302 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99879 * 179.97438 * 7 6 5 10 10 N 1.31508 * 120.00150 * 179.97438 * 9 7 6 11 11 Si 1.86799 * 119.99853 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47569 * 90.00141 * 11 9 7 13 13 H 1.48498 * 109.47351 * 210.00256 * 11 9 7 14 14 H 1.48506 * 109.47438 * 330.00080 * 11 9 7 15 15 C 1.34780 * 119.99776 * 84.88316 * 5 4 3 16 16 O 1.21518 * 120.00041 * 3.01119 * 15 5 4 17 17 C 1.48175 * 119.99841 * 183.00759 * 15 5 4 18 18 C 1.39310 * 119.72100 * 173.16060 * 17 15 5 19 19 C 1.38584 * 119.05912 * 180.27928 * 18 17 15 20 20 C 1.50701 * 120.75652 * 179.70311 * 19 18 17 21 21 F 1.39902 * 109.47019 * 90.00233 * 20 19 18 22 22 F 1.39902 * 109.47016 * 209.99557 * 20 19 18 23 23 F 1.39894 * 109.47073 * 329.99703 * 20 19 18 24 24 C 1.38635 * 118.48737 * 359.46039 * 19 18 17 25 25 C 1.38557 * 119.34663 * 0.51933 * 24 19 18 26 26 N 1.31514 * 120.90717 * 359.74683 * 25 24 19 27 27 H 1.09008 * 109.46802 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47335 * 299.99196 * 1 2 3 29 29 H 1.08996 * 109.47653 * 60.00135 * 1 2 3 30 30 H 1.09002 * 109.47316 * 60.00357 * 3 2 1 31 31 H 1.08997 * 109.47874 * 300.00432 * 3 2 1 32 32 H 1.09000 * 109.47643 * 305.00912 * 4 3 2 33 33 H 1.08998 * 109.47654 * 185.00172 * 4 3 2 34 34 H 1.09003 * 109.46945 * 22.71650 * 6 5 4 35 35 H 1.08991 * 109.47796 * 142.72287 * 6 5 4 36 36 H 0.97005 * 120.00241 * 179.97438 * 10 9 7 37 37 H 1.08004 * 120.47259 * 0.02562 * 18 17 15 38 38 H 1.08000 * 120.32242 * 180.27218 * 24 19 18 39 39 H 1.08001 * 119.54365 * 179.76681 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5642 -1.2509 6 6 4.2141 -0.8803 -1.3084 7 6 5.6851 -1.1549 -1.1300 8 1 6.3742 -0.3354 -0.9883 9 6 6.1513 -2.4523 -1.1475 10 7 7.4350 -2.6920 -0.9923 11 14 4.9594 -3.8698 -1.3918 12 1 4.8268 -4.1609 -2.8419 13 1 5.4718 -5.0740 -0.6900 14 1 3.6318 -3.5014 -0.8375 15 6 4.1639 1.3222 -2.3495 16 8 4.0198 2.5272 -2.2881 17 6 4.5456 0.6861 -3.6322 18 6 4.5984 1.4524 -4.7944 19 6 4.9513 0.8422 -5.9876 20 6 5.0140 1.6333 -7.2687 21 9 6.3017 2.1553 -7.4318 22 9 4.7096 0.7973 -8.3484 23 9 4.0891 2.6815 -7.2152 24 6 5.2503 -0.5115 -5.9749 25 6 5.1777 -1.2118 -4.7815 26 7 4.8346 -0.6088 -3.6642 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8465 -0.8899 32 1 3.8508 0.5686 0.8426 33 1 3.9783 2.1767 0.0902 34 1 3.6536 -1.3725 -0.5137 35 1 3.8875 -1.2641 -2.2748 36 1 7.7630 -3.6048 -1.0043 37 1 4.3636 2.5062 -4.7667 38 1 5.5332 -1.0160 -6.8869 39 1 5.4062 -2.2672 -4.7687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602899256.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:08 Heat of formation + Delta-G solvation = -183.106483 kcal Electronic energy + Delta-G solvation = -29440.484156 eV Core-core repulsion = 24741.137883 eV Total energy + Delta-G solvation = -4699.346272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -51.28641 -48.78666 -48.74933 -41.91111 -40.22029 -38.69823 -36.85570 -34.59113 -34.43049 -32.79532 -31.33910 -29.32779 -27.84601 -27.26111 -25.82817 -24.36262 -23.97924 -23.51581 -21.04675 -19.62711 -19.61320 -19.24034 -18.95418 -18.20028 -17.57438 -17.25658 -17.14346 -16.83372 -16.52095 -16.29074 -15.85028 -15.73860 -15.64079 -15.53704 -15.33378 -15.17057 -14.96636 -14.88964 -14.80382 -14.51975 -14.30547 -13.92875 -13.57543 -13.35396 -13.23655 -12.97985 -12.79671 -12.64556 -12.44983 -12.01081 -11.94730 -11.62594 -11.37605 -11.27613 -10.63452 -10.62137 -10.40678 -10.03306 -9.41887 -8.14095 -6.12862 -0.54156 -0.23802 1.40440 1.43973 1.48722 1.59103 1.61510 2.08543 2.47528 2.50218 2.63326 2.84382 2.90038 3.12258 3.24290 3.28048 3.63393 3.66656 3.81186 4.08960 4.11103 4.22606 4.38156 4.42583 4.52417 4.53034 4.55647 4.60549 4.68909 4.83847 4.85317 4.94805 5.18697 5.44928 5.64561 5.75796 6.22097 6.30262 6.54262 6.71371 6.83868 7.14365 7.47603 9.03025 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.010321 B = 0.004943 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.161735 B = 5663.004128 C = 7277.233660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.057 3.943 4 C 0.110 3.890 5 N -0.567 5.567 6 C 0.218 3.782 7 C -0.491 4.491 8 H 0.018 0.982 9 C 0.028 3.972 10 N -0.952 5.952 11 Si 0.931 3.069 12 H -0.248 1.248 13 H -0.295 1.295 14 H -0.254 1.254 15 C 0.561 3.439 16 O -0.579 6.579 17 C 0.063 3.937 18 C -0.071 4.071 19 C -0.159 4.159 20 C 0.526 3.474 21 F -0.174 7.174 22 F -0.165 7.165 23 F -0.174 7.174 24 C -0.082 4.082 25 C 0.084 3.916 26 N -0.403 5.403 27 H 0.092 0.908 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.079 0.921 36 H 0.263 0.737 37 H 0.158 0.842 38 H 0.188 0.812 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 4.385 -9.921 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.012 4.012 5 N -0.294 5.294 6 C 0.097 3.903 7 C -0.530 4.530 8 H 0.036 0.964 9 C -0.169 4.169 10 N -0.593 5.593 11 Si 0.755 3.245 12 H -0.172 1.172 13 H -0.222 1.222 14 H -0.178 1.178 15 C 0.348 3.652 16 O -0.462 6.462 17 C -0.075 4.075 18 C -0.092 4.092 19 C -0.168 4.168 20 C 0.472 3.528 21 F -0.156 7.156 22 F -0.146 7.146 23 F -0.155 7.155 24 C -0.102 4.102 25 C -0.075 4.075 26 N -0.114 5.114 27 H 0.110 0.890 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.046 0.954 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.175 0.825 38 H 0.205 0.795 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -11.368 4.259 -9.074 15.156 hybrid contribution 0.145 0.133 -0.633 0.663 sum -11.224 4.391 -9.708 15.476 Atomic orbital electron populations 1.22895 0.79754 1.03533 1.00722 1.87951 1.21339 1.28261 1.95539 1.22905 0.92881 0.84854 1.01368 1.21685 0.93380 0.99816 0.86365 1.47881 1.61977 1.10307 1.09285 1.20173 0.94784 0.75954 0.99418 1.21199 0.92136 0.92287 1.47343 0.96402 1.25444 0.96102 1.00932 0.94426 1.70064 1.15354 1.20993 1.52927 0.85977 0.80063 0.78346 0.80148 1.17204 1.22156 1.17819 1.18063 0.77434 0.85716 0.83967 1.90663 1.55707 1.14069 1.85716 1.21089 1.01557 0.90883 0.93938 1.21810 0.94678 1.02028 0.90679 1.20364 1.07306 0.96214 0.92922 1.17777 0.73910 0.77573 0.83553 1.93249 1.38901 1.87394 1.96007 1.93218 1.92889 1.71103 1.57431 1.93214 1.66432 1.59341 1.96521 1.22537 0.93749 0.92101 1.01784 1.23509 0.95082 1.02156 0.86716 1.68468 1.04876 1.09242 1.28822 0.88955 0.92371 0.93964 0.89520 0.93783 0.89411 0.88796 0.95448 0.90404 0.92792 0.82487 0.79463 0.79901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -13.00 10.32 -148.98 -1.54 -14.53 16 3 C 0.06 1.68 6.25 71.98 0.45 2.13 16 4 C 0.11 3.91 5.73 86.38 0.50 4.41 16 5 N -0.57 -24.04 2.44 -829.19 -2.02 -26.06 16 6 C 0.22 10.03 3.71 85.63 0.32 10.35 16 7 C -0.49 -26.68 8.49 25.60 0.22 -26.46 16 8 H 0.02 1.12 8.06 -2.91 -0.02 1.10 16 9 C 0.03 1.53 5.47 84.66 0.46 1.99 16 10 N -0.95 -56.80 13.96 21.45 0.30 -56.50 16 11 Si 0.93 41.09 27.47 68.60 1.88 42.97 16 12 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 15 C 0.56 23.74 7.55 86.88 0.66 24.40 16 16 O -0.58 -25.10 15.99 -3.77 -0.06 -25.16 16 17 C 0.06 2.42 6.62 41.91 0.28 2.70 16 18 C -0.07 -2.26 9.00 22.61 0.20 -2.05 16 19 C -0.16 -4.14 5.47 -19.69 -0.11 -4.25 16 20 C 0.53 11.97 3.39 71.24 0.24 12.21 16 21 F -0.17 -4.19 17.30 44.97 0.78 -3.41 16 22 F -0.17 -3.34 16.56 44.97 0.74 -2.59 16 23 F -0.17 -4.10 16.55 44.97 0.74 -3.36 16 24 C -0.08 -1.94 9.49 22.44 0.21 -1.72 16 25 C 0.08 2.57 11.18 84.82 0.95 3.52 16 26 N -0.40 -15.73 4.97 -184.92 -0.92 -16.65 16 27 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 3.15 8.03 -2.39 -0.02 3.13 16 33 H 0.09 3.22 7.54 -2.39 -0.02 3.20 16 34 H 0.03 1.29 6.83 -2.39 -0.02 1.27 16 35 H 0.08 3.51 4.69 -2.75 -0.01 3.50 16 36 H 0.26 14.76 8.31 -92.70 -0.77 13.99 16 37 H 0.16 4.78 7.30 -2.91 -0.02 4.76 16 38 H 0.19 2.88 7.69 -2.91 -0.02 2.86 16 39 H 0.18 4.91 8.06 -2.91 -0.02 4.89 16 Total: -1.00 -68.93 346.90 6.58 -62.36 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.04 Total: 13.89 kcal Atomic # 6 Polarization: 23.44 SS G_CDS: 5.62 Total: 29.06 kcal Atomic # 7 Polarization: -96.57 SS G_CDS: -2.64 Total: -99.21 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.60 Total: -39.70 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.27 Total: -9.37 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 1.88 Total: 42.97 kcal Total: -68.93 6.58 -62.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602899256.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.751 kcal (2) G-P(sol) polarization free energy of solvation -68.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds