Wall clock time and date at job start Tue Mar 31 2020 16:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76202 * 102.99822 * 2 1 4 4 C 1.38977 * 120.07893 * 179.97438 * 3 2 1 5 5 C 1.38083 * 119.91745 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.08018 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.91922 * 180.02562 * 6 5 4 8 8 N 1.46491 * 109.47207 * 90.00016 * 7 6 5 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21693 * 120.00014 * 0.28042 * 13 12 11 15 15 C 1.46373 * 120.00147 * 180.27610 * 13 12 11 16 16 H 1.08002 * 120.00141 * 0.02562 * 15 13 12 17 17 C 1.40050 * 120.00087 * 179.97438 * 15 13 12 18 18 N 1.30674 * 120.00151 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99913 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46867 * 90.00451 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00308 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00649 * 19 17 15 23 23 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 24 24 N 1.28636 * 108.88627 * 0.25926 * 23 10 9 25 25 C 1.38304 * 120.16659 * 0.27655 * 6 5 4 26 26 C 1.38086 * 120.07058 * 359.45058 * 25 6 5 27 27 H 1.09000 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47082 * 299.99751 * 1 2 3 29 29 H 1.08996 * 109.47306 * 60.00190 * 1 2 3 30 30 H 1.07998 * 120.04244 * 0.04417 * 4 3 2 31 31 H 1.07997 * 119.95654 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46964 * 330.00003 * 7 6 5 33 33 H 1.08999 * 109.47194 * 209.99935 * 7 6 5 34 34 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 35 35 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 36 36 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 38 38 H 0.96991 * 119.99824 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.96596 * 179.72453 * 25 6 5 40 40 H 1.07999 * 120.03615 * 180.27370 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5388 2.1251 0.0005 5 6 3.8456 3.4714 0.0011 6 6 2.8328 4.4131 0.0005 7 6 3.1717 5.8815 0.0005 8 7 3.2821 6.3572 -1.3806 9 6 2.6041 7.3980 -1.9173 10 6 3.0040 7.4834 -3.2076 11 6 2.5346 8.4832 -4.2329 12 7 3.4637 9.6152 -4.2719 13 6 3.2469 10.6358 -5.1251 14 8 2.2765 10.6194 -5.8593 15 6 4.1784 11.7640 -5.1684 16 1 5.0397 11.7785 -4.5170 17 6 3.9533 12.8243 -6.0553 18 7 2.9115 12.8066 -6.8439 19 14 5.1418 14.2644 -6.1101 20 1 6.2100 13.9871 -7.1036 21 1 4.4097 15.4958 -6.5012 22 1 5.7505 14.4552 -4.7691 23 7 3.9020 6.5092 -3.3922 24 7 4.0444 5.8600 -2.2909 25 6 1.5096 4.0107 0.0052 26 6 1.1953 2.6661 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.3302 1.3902 0.0002 31 1 4.8777 3.7893 0.0019 32 1 4.1204 6.0354 0.5148 33 1 2.3860 6.4358 0.5140 34 1 1.8863 8.0315 -1.4175 35 1 1.5397 8.8388 -3.9647 36 1 2.4988 8.0085 -5.2134 37 1 4.2373 9.6282 -3.6869 38 1 2.7555 13.5411 -7.4578 39 1 0.7213 4.7488 0.0093 40 1 0.1618 2.3525 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603180504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:19 Heat of formation + Delta-G solvation = 87.681130 kcal Electronic energy + Delta-G solvation = -23985.813384 eV Core-core repulsion = 20315.111706 eV Total energy + Delta-G solvation = -3670.701678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.15235 -39.70266 -37.24612 -35.34601 -33.56727 -32.32424 -31.90138 -31.59141 -30.66518 -29.43573 -27.45596 -26.91464 -25.00356 -23.16927 -22.90706 -21.70423 -20.80133 -19.61954 -18.29133 -17.63930 -16.94884 -16.83768 -16.10462 -15.57309 -15.27126 -15.16352 -14.82033 -14.56875 -14.35584 -14.26855 -14.00071 -13.82461 -13.48880 -13.31830 -13.18655 -12.95669 -12.64539 -12.16294 -12.00187 -11.64818 -11.57953 -11.30547 -11.11798 -10.93226 -10.76330 -10.57105 -10.42197 -10.21698 -10.19053 -10.00738 -9.44952 -9.15053 -8.81485 -7.90306 -7.57125 -7.47002 -6.14849 -4.59829 0.53262 0.90991 1.00939 1.66577 1.88190 2.34042 2.67460 3.17432 3.24029 3.27160 3.27416 3.95626 4.15294 4.17751 4.39318 4.44546 4.51364 4.52841 4.57951 4.63520 4.75891 4.90082 4.98205 5.03600 5.14158 5.18870 5.22969 5.31893 5.50181 5.60403 5.72882 5.79202 5.86402 6.01872 6.15626 6.36584 6.46572 6.54543 6.60604 7.47506 7.96161 8.11174 8.37099 8.66328 9.06387 9.56826 10.63562 10.81950 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033260 B = 0.001807 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.661730 B =15489.369891 C =15831.569214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.114 6.114 3 C -0.071 4.071 4 C -0.102 4.102 5 C -0.060 4.060 6 C -0.121 4.121 7 C 0.161 3.839 8 N -0.295 5.295 9 C -0.042 4.042 10 C -0.017 4.017 11 C 0.217 3.783 12 N -0.761 5.761 13 C 0.557 3.443 14 O -0.581 6.581 15 C -0.544 4.544 16 H 0.067 0.933 17 C 0.088 3.912 18 N -0.768 5.768 19 Si 0.908 3.092 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.265 1.265 23 N -0.255 5.255 24 N -0.084 5.084 25 C -0.075 4.075 26 C -0.138 4.138 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.132 0.868 31 H 0.134 0.866 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.191 0.809 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.381 0.619 38 H 0.268 0.732 39 H 0.128 0.872 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -22.097 21.091 30.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.128 5.872 3 C -0.184 4.184 4 C -0.126 4.126 5 C -0.081 4.081 6 C -0.124 4.124 7 C 0.041 3.959 8 N -0.089 5.089 9 C -0.192 4.192 10 C -0.155 4.155 11 C 0.090 3.910 12 N -0.417 5.417 13 C 0.361 3.639 14 O -0.464 6.464 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.397 5.397 19 Si 0.732 3.268 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.190 1.190 23 N -0.123 5.123 24 N -0.064 5.064 25 C -0.095 4.095 26 C -0.162 4.162 27 H 0.128 0.872 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.150 0.850 31 H 0.152 0.848 32 H 0.126 0.874 33 H 0.132 0.868 34 H 0.208 0.792 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.212 0.788 38 H 0.079 0.921 39 H 0.146 0.854 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.154 -24.187 20.084 31.596 hybrid contribution -0.746 2.538 0.684 2.733 sum -3.900 -21.649 20.768 30.252 Atomic orbital electron populations 1.23707 0.94562 1.07332 1.05859 1.85583 1.06647 1.02821 1.92100 1.21847 0.96813 0.96672 1.03108 1.20768 0.94306 0.96133 1.01396 1.21017 0.99389 0.91956 0.95703 1.19686 0.93920 0.93973 1.04863 1.20869 1.05186 0.92231 0.77655 1.47389 1.28328 1.21724 1.11447 1.23459 1.04275 0.95768 0.95721 1.22349 0.99071 0.99383 0.94732 1.19045 0.93272 0.84300 0.94395 1.46154 1.28853 1.21156 1.45582 1.18214 0.86128 0.81069 0.78526 1.90602 1.32178 1.79823 1.43759 1.20867 1.10359 1.03719 1.23116 0.91452 1.25702 0.94955 0.98597 0.93950 1.70021 1.23936 1.29474 1.16256 0.86376 0.80663 0.80499 0.79219 1.19731 1.20484 1.18974 1.75137 1.15679 1.05950 1.15491 1.78279 1.14359 1.20857 0.92868 1.20950 0.95659 0.95653 0.97269 1.21115 0.98371 0.92913 1.03792 0.87208 0.89609 0.89529 0.85012 0.84792 0.87436 0.86775 0.79236 0.91548 0.91488 0.78776 0.92131 0.85411 0.85554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.15 101.05 0.92 0.27 16 2 S -0.11 -0.86 22.56 -107.50 -2.43 -3.29 16 3 C -0.07 -0.62 6.11 -39.04 -0.24 -0.86 16 4 C -0.10 -0.88 9.79 -39.36 -0.39 -1.27 16 5 C -0.06 -0.51 9.69 -39.62 -0.38 -0.89 16 6 C -0.12 -0.98 5.25 -104.57 -0.55 -1.53 16 7 C 0.16 1.16 6.58 -5.20 -0.03 1.13 16 8 N -0.30 -3.52 3.43 -62.45 -0.21 -3.73 16 9 C -0.04 -0.53 11.50 -17.04 -0.20 -0.73 16 10 C -0.02 -0.30 6.61 -82.78 -0.55 -0.84 16 11 C 0.22 4.35 6.23 -5.19 -0.03 4.31 16 12 N -0.76 -17.66 5.54 -62.90 -0.35 -18.01 16 13 C 0.56 16.09 7.75 -12.99 -0.10 15.99 16 14 O -0.58 -18.97 15.02 5.20 0.08 -18.89 16 15 C -0.54 -15.60 9.54 -35.63 -0.34 -15.94 16 16 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 17 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 18 N -0.77 -23.23 11.83 55.55 0.66 -22.58 16 19 Si 0.91 20.38 29.56 -169.99 -5.02 15.36 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 N -0.25 -4.70 12.41 33.29 0.41 -4.29 16 24 N -0.08 -1.32 12.92 60.35 0.78 -0.54 16 25 C -0.07 -0.58 9.69 -39.61 -0.38 -0.96 16 26 C -0.14 -1.09 9.36 -39.37 -0.37 -1.46 16 27 H 0.11 0.34 8.14 -51.92 -0.42 -0.09 16 28 H 0.08 0.31 7.75 -51.92 -0.40 -0.09 16 29 H 0.09 0.38 7.75 -51.93 -0.40 -0.02 16 30 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 31 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 32 H 0.11 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.11 0.47 8.01 -51.93 -0.42 0.05 16 34 H 0.19 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.38 8.11 8.44 -40.82 -0.34 7.77 16 38 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.13 0.76 5.88 -52.49 -0.31 0.45 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -38.15 366.08 -8.10 -46.25 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.80 Total: 4.60 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.73 Total: -0.40 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 1.29 Total: -49.15 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: 0.08 Total: -18.89 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -0.86 SS G_CDS: -2.43 Total: -3.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -38.15 -8.10 -46.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.928 kcal (2) G-P(sol) polarization free energy of solvation -38.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds