Wall clock time and date at job start Tue Mar 31 2020 16:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76202 * 102.99822 * 2 1 4 4 C 1.38977 * 120.07893 * 179.97438 * 3 2 1 5 5 C 1.38083 * 119.91745 * 180.02562 * 4 3 2 6 6 C 1.38298 * 120.08018 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.91922 * 180.02562 * 6 5 4 8 8 N 1.46491 * 109.47207 * 90.00016 * 7 6 5 9 9 C 1.35317 * 125.87029 * 125.29585 * 8 7 6 10 10 C 1.35352 * 106.17693 * 180.18381 * 9 8 7 11 11 C 1.50700 * 126.75361 * 179.84844 * 10 9 8 12 12 N 1.46498 * 109.46769 * 94.71485 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72341 * 12 11 10 14 14 O 1.21693 * 120.00014 * 0.28042 * 13 12 11 15 15 C 1.46373 * 120.00147 * 180.27610 * 13 12 11 16 16 H 1.08002 * 120.00141 * 0.02562 * 15 13 12 17 17 C 1.40050 * 120.00087 * 179.97438 * 15 13 12 18 18 N 1.30674 * 120.00151 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 119.99913 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46867 * 90.00451 * 19 17 15 21 21 H 1.48501 * 109.47216 * 210.00308 * 19 17 15 22 22 H 1.48499 * 109.47135 * 330.00649 * 19 17 15 23 23 N 1.33772 * 106.49634 * 359.59642 * 10 9 8 24 24 N 1.28636 * 108.88627 * 0.25926 * 23 10 9 25 25 C 1.38304 * 120.16659 * 0.27655 * 6 5 4 26 26 C 1.38086 * 120.07058 * 359.45058 * 25 6 5 27 27 H 1.09000 * 109.47002 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47082 * 299.99751 * 1 2 3 29 29 H 1.08996 * 109.47306 * 60.00190 * 1 2 3 30 30 H 1.07998 * 120.04244 * 0.04417 * 4 3 2 31 31 H 1.07997 * 119.95654 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.46964 * 330.00003 * 7 6 5 33 33 H 1.08999 * 109.47194 * 209.99935 * 7 6 5 34 34 H 1.08002 * 126.91295 * 0.03783 * 9 8 7 35 35 H 1.09004 * 109.47210 * 334.71843 * 11 10 9 36 36 H 1.08994 * 109.47121 * 214.71813 * 11 10 9 37 37 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 38 38 H 0.96991 * 119.99824 * 179.97438 * 18 17 15 39 39 H 1.07996 * 119.96596 * 179.72453 * 25 6 5 40 40 H 1.07999 * 120.03615 * 180.27370 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5388 2.1251 0.0005 5 6 3.8456 3.4714 0.0011 6 6 2.8328 4.4131 0.0005 7 6 3.1717 5.8815 0.0005 8 7 3.2821 6.3572 -1.3806 9 6 2.6041 7.3980 -1.9173 10 6 3.0040 7.4834 -3.2076 11 6 2.5346 8.4832 -4.2329 12 7 3.4637 9.6152 -4.2719 13 6 3.2469 10.6358 -5.1251 14 8 2.2765 10.6194 -5.8593 15 6 4.1784 11.7640 -5.1684 16 1 5.0397 11.7785 -4.5170 17 6 3.9533 12.8243 -6.0553 18 7 2.9115 12.8066 -6.8439 19 14 5.1418 14.2644 -6.1101 20 1 6.2100 13.9871 -7.1036 21 1 4.4097 15.4958 -6.5012 22 1 5.7505 14.4552 -4.7691 23 7 3.9020 6.5092 -3.3922 24 7 4.0444 5.8600 -2.2909 25 6 1.5096 4.0107 0.0052 26 6 1.1953 2.6661 -0.0010 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 4.3302 1.3902 0.0002 31 1 4.8777 3.7893 0.0019 32 1 4.1204 6.0354 0.5148 33 1 2.3860 6.4358 0.5140 34 1 1.8863 8.0315 -1.4175 35 1 1.5397 8.8388 -3.9647 36 1 2.4988 8.0085 -5.2134 37 1 4.2373 9.6282 -3.6869 38 1 2.7555 13.5411 -7.4578 39 1 0.7213 4.7488 0.0093 40 1 0.1618 2.3525 -0.0018 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603180504.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:18 Heat of formation + Delta-G solvation = 60.740122 kcal Electronic energy + Delta-G solvation = -23986.981634 eV Core-core repulsion = 20315.111706 eV Total energy + Delta-G solvation = -3671.869928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.26645 -40.29547 -39.34148 -36.38039 -35.26931 -34.44615 -32.65526 -32.23720 -32.12765 -29.83625 -28.96881 -28.04948 -26.76801 -23.77840 -23.70564 -22.80112 -21.97742 -21.52822 -19.39804 -18.84463 -18.17308 -17.72764 -17.40053 -16.72230 -16.36783 -16.13232 -15.97786 -15.85389 -15.70002 -15.16020 -14.88006 -14.76996 -14.51692 -14.43003 -14.11444 -13.80396 -13.54491 -13.45228 -13.38506 -13.09616 -12.76337 -12.68195 -12.59334 -12.47229 -12.22853 -11.99492 -11.79778 -11.29894 -11.06848 -10.91127 -10.79005 -10.39176 -10.04074 -9.78745 -9.48562 -8.48708 -8.26887 -6.83377 -0.09178 0.32024 0.49542 0.63406 1.36505 1.40198 1.43153 1.44056 1.53310 1.59157 2.28000 2.49147 2.65342 3.18104 3.37177 3.46336 3.63523 3.66894 3.87402 3.88812 3.98919 4.19281 4.20341 4.22118 4.25561 4.34851 4.46820 4.55006 4.65185 4.72760 4.81019 4.94337 4.98756 5.05560 5.15129 5.20457 5.34303 5.43189 5.65760 5.80155 5.88837 6.18640 6.27685 6.88839 7.50439 7.53346 8.49886 8.68992 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.033260 B = 0.001807 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.661730 B =15489.369891 C =15831.569214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.150 6.150 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.070 4.070 6 C -0.130 4.130 7 C 0.152 3.848 8 N -0.278 5.278 9 C -0.009 4.009 10 C -0.048 4.048 11 C 0.225 3.775 12 N -0.748 5.748 13 C 0.541 3.459 14 O -0.630 6.630 15 C -0.572 4.572 16 H 0.085 0.915 17 C 0.029 3.971 18 N -0.820 5.820 19 Si 0.998 3.002 20 H -0.265 1.265 21 H -0.270 1.270 22 H -0.249 1.249 23 N -0.300 5.300 24 N -0.100 5.100 25 C -0.078 4.078 26 C -0.147 4.147 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.156 0.844 34 H 0.234 0.766 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.392 0.608 38 H 0.275 0.725 39 H 0.151 0.849 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 -21.230 23.605 32.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.093 5.907 3 C -0.195 4.195 4 C -0.144 4.144 5 C -0.091 4.091 6 C -0.133 4.133 7 C 0.034 3.966 8 N -0.072 5.072 9 C -0.161 4.161 10 C -0.186 4.186 11 C 0.099 3.901 12 N -0.403 5.403 13 C 0.345 3.655 14 O -0.517 6.517 15 C -0.609 4.609 16 H 0.103 0.897 17 C -0.186 4.186 18 N -0.449 5.449 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.172 1.172 23 N -0.167 5.167 24 N -0.079 5.079 25 C -0.099 4.099 26 C -0.171 4.171 27 H 0.143 0.857 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.145 0.855 33 H 0.174 0.826 34 H 0.251 0.749 35 H 0.092 0.908 36 H 0.055 0.945 37 H 0.224 0.776 38 H 0.085 0.915 39 H 0.168 0.832 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.156 -23.390 22.663 32.721 hybrid contribution -0.800 2.100 0.014 2.247 sum -3.956 -21.290 22.677 31.355 Atomic orbital electron populations 1.23791 0.91551 1.08606 1.06566 1.85673 1.10061 1.02891 1.92092 1.22016 0.97100 0.97166 1.03172 1.20943 0.94739 0.96588 1.02118 1.21201 1.00025 0.92097 0.95746 1.19819 0.94038 0.94392 1.05073 1.21433 1.07926 0.92052 0.75212 1.47774 1.26376 1.20611 1.12398 1.23911 1.03030 0.95115 0.94009 1.21910 1.01101 0.99720 0.95914 1.18880 0.93072 0.83833 0.94348 1.45824 1.29433 1.20818 1.44217 1.18572 0.85736 0.82408 0.78766 1.90555 1.34043 1.81201 1.45901 1.21400 1.11032 1.04409 1.24062 0.89679 1.26960 0.96901 1.01967 0.92775 1.70180 1.26461 1.31064 1.17239 0.85020 0.77560 0.75663 0.80034 1.18935 1.19516 1.17195 1.75075 1.17129 1.07117 1.17351 1.78194 1.15510 1.21166 0.93019 1.21278 0.96128 0.96080 0.96371 1.21407 0.99080 0.93078 1.03512 0.85668 0.88397 0.89231 0.84864 0.84300 0.85525 0.82594 0.74930 0.90793 0.94479 0.77566 0.91503 0.83157 0.83883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.15 113.37 1.04 0.03 16 2 S -0.15 -2.21 22.56 -56.49 -1.27 -3.48 16 3 C -0.08 -1.36 6.11 22.62 0.14 -1.22 16 4 C -0.12 -2.07 9.79 22.41 0.22 -1.85 16 5 C -0.07 -1.12 9.69 22.25 0.22 -0.90 16 6 C -0.13 -1.80 5.25 -19.83 -0.10 -1.90 16 7 C 0.15 1.60 6.58 85.64 0.56 2.17 16 8 N -0.28 -5.83 3.43 -351.48 -1.21 -7.03 16 9 C -0.01 -0.19 11.50 83.49 0.96 0.77 16 10 C -0.05 -1.59 6.61 41.60 0.28 -1.32 16 11 C 0.22 9.19 6.23 85.63 0.53 9.73 16 12 N -0.75 -35.16 5.54 -471.15 -2.61 -37.78 16 13 C 0.54 32.03 7.75 86.36 0.67 32.70 16 14 O -0.63 -42.68 15.02 -4.33 -0.06 -42.75 16 15 C -0.57 -33.03 9.54 24.83 0.24 -32.79 16 16 H 0.09 4.43 7.85 -2.91 -0.02 4.41 16 17 C 0.03 1.64 5.50 85.30 0.47 2.11 16 18 N -0.82 -50.57 11.83 21.84 0.26 -50.31 16 19 Si 1.00 41.36 29.56 68.60 2.03 43.39 16 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 21 H -0.27 -10.71 7.11 99.48 0.71 -10.00 16 22 H -0.25 -9.54 7.11 99.48 0.71 -8.84 16 23 N -0.30 -11.05 12.41 -48.60 -0.60 -11.66 16 24 N -0.10 -3.02 12.92 37.02 0.48 -2.54 16 25 C -0.08 -1.00 9.69 22.25 0.22 -0.79 16 26 C -0.15 -2.06 9.36 22.41 0.21 -1.85 16 27 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.10 0.50 7.75 -2.39 -0.02 0.48 16 29 H 0.09 0.63 7.75 -2.39 -0.02 0.61 16 30 H 0.13 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.13 0.94 8.08 -2.39 -0.02 0.92 16 33 H 0.16 0.39 8.01 -2.39 -0.02 0.38 16 34 H 0.23 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.07 2.88 8.14 -2.38 -0.02 2.86 16 36 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.39 16.62 8.44 -92.71 -0.78 15.84 16 38 H 0.28 15.31 8.29 -92.71 -0.77 14.54 16 39 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.14 1.40 5.88 -2.91 -0.02 1.38 16 Total: -1.00 -87.20 366.08 2.95 -84.25 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.30 Total: 23.04 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: 5.64 Total: 4.87 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -3.68 Total: -109.32 kcal Atomic # 8 Polarization: -42.68 SS G_CDS: -0.06 Total: -42.75 kcal Atomic # 14 Polarization: 41.36 SS G_CDS: 2.03 Total: 43.39 kcal Atomic # 16 Polarization: -2.21 SS G_CDS: -1.27 Total: -3.48 kcal Total: -87.20 2.95 -84.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180504.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.990 kcal (2) G-P(sol) polarization free energy of solvation -87.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds