Wall clock time and date at job start Tue Mar 31 2020 16:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00317 * 2 1 4 4 H 1.09002 * 109.46967 * 329.99890 * 3 2 1 5 5 C 1.52997 * 109.47183 * 210.00271 * 3 2 1 6 6 N 1.46502 * 109.47490 * 64.99943 * 5 3 2 7 7 C 1.34779 * 120.00391 * 180.02562 * 6 5 3 8 8 O 1.21583 * 119.99528 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.39242 * 119.99765 * 175.70812 * 9 7 6 11 11 C 1.39486 * 119.82886 * 215.01448 * 10 9 7 12 12 C 1.36380 * 120.16536 * 179.75957 * 11 10 9 13 13 C 1.40870 * 119.82559 * 0.54007 * 12 11 10 14 14 C 1.41160 * 120.16148 * 179.69518 * 13 12 11 15 15 H 1.07997 * 119.99722 * 214.80284 * 14 13 12 16 16 C 1.39896 * 119.99857 * 34.80402 * 14 13 12 17 17 N 1.30884 * 120.00233 * 355.56183 * 16 14 13 18 18 Si 1.86796 * 120.00030 * 175.55536 * 16 14 13 19 19 H 1.48504 * 109.46720 * 60.00248 * 18 16 14 20 20 H 1.48496 * 109.47412 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47391 * 300.00334 * 18 16 14 22 22 C 1.40871 * 119.67520 * 359.71693 * 13 12 11 23 23 C 1.36369 * 119.82746 * 0.02562 * 22 13 12 24 24 C 1.52994 * 109.47589 * 89.99876 * 3 2 1 25 25 F 1.39898 * 109.46990 * 60.00108 * 24 3 2 26 26 F 1.39904 * 109.47142 * 300.00588 * 24 3 2 27 27 F 1.39892 * 109.47403 * 180.02562 * 24 3 2 28 28 H 1.09001 * 109.46761 * 60.00063 * 1 2 3 29 29 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46557 * 300.00274 * 1 2 3 31 31 H 1.08997 * 109.47476 * 184.99675 * 5 3 2 32 32 H 1.08996 * 109.47278 * 304.99602 * 5 3 2 33 33 H 0.97000 * 119.99893 * 359.97438 * 6 5 3 34 34 H 0.96996 * 119.99865 * 355.70341 * 9 7 6 35 35 H 1.08004 * 119.91590 * 0.02562 * 11 10 9 36 36 H 1.07995 * 120.08101 * 180.25964 * 12 11 10 37 37 H 0.96996 * 119.99924 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.08338 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.91836 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 3.3589 1.2632 -0.7213 6 7 3.1477 0.9330 -2.1329 7 6 4.2013 0.8394 -2.9681 8 8 5.3271 1.0295 -2.5501 9 7 4.0070 0.5352 -4.2666 10 6 5.0847 0.5262 -5.1484 11 6 4.9043 0.9381 -6.4687 12 6 5.9561 0.9366 -7.3369 13 6 7.2245 0.5070 -6.9000 14 6 8.3167 0.4965 -7.7943 15 1 9.0682 -0.2755 -7.7197 16 6 8.4254 1.4861 -8.7771 17 7 7.4716 2.3702 -8.9240 18 14 9.9321 1.5459 -9.8796 19 1 10.0413 0.2737 -10.6378 20 1 9.8054 2.6799 -10.8300 21 1 11.1477 1.7319 -9.0471 22 6 7.3976 0.0874 -5.5664 23 6 6.3376 0.0993 -4.7086 24 6 2.2178 1.7714 1.4424 25 9 3.0716 0.8808 2.1019 26 9 0.9846 1.8100 2.1020 27 9 2.7863 3.0496 1.4424 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 3.8428 2.2368 -0.6445 32 1 3.9931 0.5051 -0.2618 33 1 2.2496 0.7810 -2.4663 34 1 3.1165 0.3224 -4.5869 35 1 3.9301 1.2630 -6.8033 36 1 5.8158 1.2598 -8.3577 37 1 7.5472 3.0566 -9.6052 38 1 8.3671 -0.2437 -5.2246 39 1 6.4686 -0.2224 -3.6860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733617006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:40 Heat of formation + Delta-G solvation = -198.724493 kcal Electronic energy + Delta-G solvation = -27860.455469 eV Core-core repulsion = 23160.431949 eV Total energy + Delta-G solvation = -4700.023520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.50908 -48.06435 -47.93480 -40.07843 -38.91252 -37.41197 -34.97990 -34.29736 -32.91999 -31.25141 -29.54115 -28.74555 -27.08173 -26.18753 -24.58807 -22.61564 -21.64980 -20.92216 -20.19073 -19.10045 -18.90584 -18.62672 -17.83058 -17.24043 -16.99424 -16.75055 -15.63465 -15.30350 -15.13354 -14.92138 -14.83263 -14.76351 -14.72176 -14.40220 -14.12854 -14.09313 -14.01125 -13.84911 -13.39744 -12.86731 -12.70840 -12.58317 -12.31891 -12.09659 -11.89561 -11.66879 -11.32658 -11.11155 -11.00224 -10.70624 -10.51954 -10.11519 -9.54944 -9.45565 -9.23774 -9.07294 -8.86221 -7.51072 -6.81327 -6.58291 -4.30590 2.07978 2.64999 2.72919 2.88961 3.10841 3.12255 3.14145 3.18866 3.30574 3.53411 3.66307 3.80906 4.00870 4.23773 4.27148 4.60084 4.73475 4.74114 4.82082 5.14731 5.22541 5.43765 5.68104 6.19266 6.21109 6.33427 6.48149 6.78022 6.78599 7.06747 7.16807 7.28493 7.40738 7.68298 7.87570 7.98227 8.12116 8.33851 8.43870 8.66991 8.92545 8.96590 9.07970 10.32956 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.002089 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.886991 B =13401.400602 C =13698.662930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.351 6.351 3 C 0.038 3.962 4 H 0.114 0.886 5 C 0.144 3.856 6 N -0.746 5.746 7 C 0.697 3.303 8 O -0.574 6.574 9 N -0.664 5.664 10 C 0.021 3.979 11 C -0.122 4.122 12 C -0.141 4.141 13 C 0.098 3.902 14 C -0.462 4.462 15 H 0.075 0.925 16 C 0.069 3.931 17 N -0.814 5.814 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.204 4.204 23 C -0.086 4.086 24 C 0.436 3.564 25 F -0.170 7.170 26 F -0.182 7.182 27 F -0.175 7.175 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.055 0.945 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.395 0.605 34 H 0.392 0.608 35 H 0.090 0.910 36 H 0.132 0.868 37 H 0.277 0.723 38 H 0.096 0.904 39 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.830 -0.880 15.028 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.268 6.268 3 C -0.023 4.023 4 H 0.132 0.868 5 C 0.018 3.982 6 N -0.404 5.404 7 C 0.398 3.602 8 O -0.450 6.450 9 N -0.310 5.310 10 C -0.071 4.071 11 C -0.143 4.143 12 C -0.161 4.161 13 C 0.096 3.904 14 C -0.493 4.493 15 H 0.093 0.907 16 C -0.145 4.145 17 N -0.441 5.441 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.224 4.224 23 C -0.106 4.106 24 C 0.381 3.619 25 F -0.152 7.152 26 F -0.164 7.164 27 F -0.157 7.157 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.074 0.926 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.228 0.772 34 H 0.225 0.775 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -15.723 -0.648 15.310 21.955 hybrid contribution -0.529 0.385 -0.406 0.770 sum -16.252 -0.263 14.904 22.052 Atomic orbital electron populations 1.23201 0.79432 1.04391 1.01272 1.88169 1.21192 1.23466 1.94018 1.23574 0.99699 0.89077 0.89956 0.86816 1.21109 0.92228 1.03815 0.81003 1.44761 1.08942 1.78461 1.08267 1.15916 0.84298 0.78614 0.81354 1.90934 1.21467 1.56718 1.75885 1.42060 1.10713 1.71642 1.06563 1.17065 0.87531 1.12930 0.89592 1.20284 0.98453 1.02698 0.92844 1.21174 0.91217 1.03856 0.99871 1.17717 0.92466 0.89366 0.90861 1.19453 1.07420 1.10484 1.11912 0.90690 1.25866 0.97459 0.94739 0.96464 1.69757 1.31475 1.13168 1.29723 0.86256 0.81752 0.78443 0.79510 1.19094 1.20493 1.19128 1.20812 0.97162 1.10629 0.93804 1.20427 0.92085 0.99262 0.98807 1.21143 0.74301 0.75662 0.90773 1.93231 1.70782 1.67956 1.83183 1.93169 1.43395 1.96222 1.83575 1.93229 1.85123 1.40408 1.96913 0.92849 0.88240 0.92624 0.88756 0.89284 0.77185 0.77491 0.89171 0.85041 0.91166 0.88608 0.87308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.70 101.05 1.08 1.15 16 2 O -0.35 -2.87 10.23 -35.23 -0.36 -3.23 16 3 C 0.04 0.29 2.21 -26.74 -0.06 0.24 16 4 H 0.11 0.58 7.79 -51.93 -0.40 0.17 16 5 C 0.14 1.54 5.10 -4.04 -0.02 1.52 16 6 N -0.75 -8.76 5.51 -65.23 -0.36 -9.12 16 7 C 0.70 12.03 8.40 -86.92 -0.73 11.30 16 8 O -0.57 -12.52 13.76 5.29 0.07 -12.45 16 9 N -0.66 -11.40 5.31 -14.10 -0.07 -11.47 16 10 C 0.02 0.47 6.31 -83.57 -0.53 -0.06 16 11 C -0.12 -2.76 9.90 -39.79 -0.39 -3.15 16 12 C -0.14 -3.62 8.62 -39.26 -0.34 -3.96 16 13 C 0.10 2.65 5.55 -106.80 -0.59 2.06 16 14 C -0.46 -12.39 9.02 -37.85 -0.34 -12.73 16 15 H 0.07 1.93 7.85 -52.49 -0.41 1.52 16 16 C 0.07 1.77 5.42 -17.34 -0.09 1.67 16 17 N -0.81 -21.25 10.60 55.55 0.59 -20.66 16 18 Si 0.92 19.13 29.56 -169.99 -5.03 14.11 16 19 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 22 C -0.20 -5.21 9.74 -39.26 -0.38 -5.59 16 23 C -0.09 -2.07 8.61 -39.79 -0.34 -2.41 16 24 C 0.44 3.88 2.85 37.15 0.11 3.98 16 25 F -0.17 -1.81 16.83 2.25 0.04 -1.77 16 26 F -0.18 -1.55 15.50 2.25 0.03 -1.52 16 27 F -0.18 -1.66 16.71 2.25 0.04 -1.62 16 28 H 0.05 0.18 8.09 -51.93 -0.42 -0.24 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.27 6.49 -51.93 -0.34 -0.07 16 31 H 0.09 1.05 7.66 -51.93 -0.40 0.65 16 32 H 0.09 1.09 7.94 -51.93 -0.41 0.68 16 33 H 0.39 3.32 8.49 -40.82 -0.35 2.97 16 34 H 0.39 5.11 8.83 -40.82 -0.36 4.75 16 35 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 36 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 37 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 38 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.11 2.62 6.22 -52.49 -0.33 2.30 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -31.97 345.80 -6.61 -38.58 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -4.14 Total: 9.92 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -2.63 Total: -5.98 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.15 Total: -41.26 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.29 Total: -15.67 kcal Atomic # 9 Polarization: -5.02 SS G_CDS: 0.11 Total: -4.91 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.97 -6.61 -38.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733617006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.140 kcal (2) G-P(sol) polarization free energy of solvation -31.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds