Wall clock time and date at job start Tue Mar 31 2020 16:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00317 * 2 1 4 4 H 1.09002 * 109.46967 * 329.99890 * 3 2 1 5 5 C 1.52997 * 109.47183 * 210.00271 * 3 2 1 6 6 N 1.46502 * 109.47490 * 64.99943 * 5 3 2 7 7 C 1.34779 * 120.00391 * 180.02562 * 6 5 3 8 8 O 1.21583 * 119.99528 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00172 * 179.97438 * 7 6 5 10 10 C 1.39242 * 119.99765 * 175.70812 * 9 7 6 11 11 C 1.39486 * 119.82886 * 215.01448 * 10 9 7 12 12 C 1.36380 * 120.16536 * 179.75957 * 11 10 9 13 13 C 1.40870 * 119.82559 * 0.54007 * 12 11 10 14 14 C 1.41160 * 120.16148 * 179.69518 * 13 12 11 15 15 H 1.07997 * 119.99722 * 214.80284 * 14 13 12 16 16 C 1.39896 * 119.99857 * 34.80402 * 14 13 12 17 17 N 1.30884 * 120.00233 * 355.56183 * 16 14 13 18 18 Si 1.86796 * 120.00030 * 175.55536 * 16 14 13 19 19 H 1.48504 * 109.46720 * 60.00248 * 18 16 14 20 20 H 1.48496 * 109.47412 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47391 * 300.00334 * 18 16 14 22 22 C 1.40871 * 119.67520 * 359.71693 * 13 12 11 23 23 C 1.36369 * 119.82746 * 0.02562 * 22 13 12 24 24 C 1.52994 * 109.47589 * 89.99876 * 3 2 1 25 25 F 1.39898 * 109.46990 * 60.00108 * 24 3 2 26 26 F 1.39904 * 109.47142 * 300.00588 * 24 3 2 27 27 F 1.39892 * 109.47403 * 180.02562 * 24 3 2 28 28 H 1.09001 * 109.46761 * 60.00063 * 1 2 3 29 29 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46557 * 300.00274 * 1 2 3 31 31 H 1.08997 * 109.47476 * 184.99675 * 5 3 2 32 32 H 1.08996 * 109.47278 * 304.99602 * 5 3 2 33 33 H 0.97000 * 119.99893 * 359.97438 * 6 5 3 34 34 H 0.96996 * 119.99865 * 355.70341 * 9 7 6 35 35 H 1.08004 * 119.91590 * 0.02562 * 11 10 9 36 36 H 1.07995 * 120.08101 * 180.25964 * 12 11 10 37 37 H 0.96996 * 119.99924 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.08338 * 179.97438 * 22 13 12 39 39 H 1.07999 * 119.91836 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 -0.5139 5 6 3.3589 1.2632 -0.7213 6 7 3.1477 0.9330 -2.1329 7 6 4.2013 0.8394 -2.9681 8 8 5.3271 1.0295 -2.5501 9 7 4.0070 0.5352 -4.2666 10 6 5.0847 0.5262 -5.1484 11 6 4.9043 0.9381 -6.4687 12 6 5.9561 0.9366 -7.3369 13 6 7.2245 0.5070 -6.9000 14 6 8.3167 0.4965 -7.7943 15 1 9.0682 -0.2755 -7.7197 16 6 8.4254 1.4861 -8.7771 17 7 7.4716 2.3702 -8.9240 18 14 9.9321 1.5459 -9.8796 19 1 10.0413 0.2737 -10.6378 20 1 9.8054 2.6799 -10.8300 21 1 11.1477 1.7319 -9.0471 22 6 7.3976 0.0874 -5.5664 23 6 6.3376 0.0993 -4.7086 24 6 2.2178 1.7714 1.4424 25 9 3.0716 0.8808 2.1019 26 9 0.9846 1.8100 2.1020 27 9 2.7863 3.0496 1.4424 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 3.8428 2.2368 -0.6445 32 1 3.9931 0.5051 -0.2618 33 1 2.2496 0.7810 -2.4663 34 1 3.1165 0.3224 -4.5869 35 1 3.9301 1.2630 -6.8033 36 1 5.8158 1.2598 -8.3577 37 1 7.5472 3.0566 -9.6052 38 1 8.3671 -0.2437 -5.2246 39 1 6.4686 -0.2224 -3.6860 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733617006.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:39 Heat of formation + Delta-G solvation = -220.538406 kcal Electronic energy + Delta-G solvation = -27861.401391 eV Core-core repulsion = 23160.431949 eV Total energy + Delta-G solvation = -4700.969442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.22637 -48.76063 -48.69282 -41.46569 -39.72962 -39.05329 -36.32735 -35.77956 -34.67215 -32.19409 -31.41690 -30.51310 -27.50404 -27.38711 -26.14577 -23.58755 -23.14495 -22.63413 -21.74324 -19.83554 -19.72600 -19.63619 -19.18814 -18.74347 -18.22769 -17.65775 -17.05310 -16.47396 -16.40025 -16.06323 -15.67834 -15.62527 -15.52609 -15.41290 -15.21160 -15.11554 -14.88049 -14.84169 -14.77283 -14.47712 -14.17242 -13.93309 -13.55596 -13.29612 -13.16967 -12.91958 -12.83109 -12.74852 -12.45942 -12.39536 -11.83038 -11.37514 -11.24240 -11.08140 -10.99372 -10.64785 -10.21344 -9.42412 -8.66168 -8.46973 -6.29150 0.87208 1.17999 1.29522 1.41214 1.51112 1.53615 1.82240 2.13998 2.21212 2.26962 2.60690 2.75390 2.84686 3.13482 3.41003 3.56534 3.68012 3.72340 4.31872 4.39332 4.43811 4.50762 4.55064 4.60057 4.87281 4.96767 5.16364 5.17596 5.28418 5.35390 5.47553 5.70669 5.72484 5.83378 6.05815 6.13480 6.26107 6.43819 6.72040 7.00441 7.04577 7.12791 7.62973 8.45535 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.030970 B = 0.002089 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.886991 B =13401.400602 C =13698.662930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.369 6.369 3 C 0.051 3.949 4 H 0.150 0.850 5 C 0.141 3.859 6 N -0.719 5.719 7 C 0.696 3.304 8 O -0.621 6.621 9 N -0.655 5.655 10 C 0.041 3.959 11 C -0.118 4.118 12 C -0.158 4.158 13 C 0.066 3.934 14 C -0.499 4.499 15 H 0.071 0.929 16 C 0.028 3.972 17 N -0.842 5.842 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.268 1.268 21 H -0.267 1.267 22 C -0.220 4.220 23 C -0.098 4.098 24 C 0.435 3.565 25 F -0.184 7.184 26 F -0.178 7.178 27 F -0.180 7.180 28 H 0.076 0.924 29 H 0.108 0.892 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.416 0.584 35 H 0.127 0.873 36 H 0.120 0.880 37 H 0.284 0.716 38 H 0.094 0.906 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.026 -0.475 15.039 24.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 O -0.287 6.287 3 C -0.010 4.010 4 H 0.167 0.833 5 C 0.016 3.984 6 N -0.377 5.377 7 C 0.397 3.603 8 O -0.501 6.501 9 N -0.303 5.303 10 C -0.053 4.053 11 C -0.138 4.138 12 C -0.179 4.179 13 C 0.063 3.937 14 C -0.530 4.530 15 H 0.089 0.911 16 C -0.184 4.184 17 N -0.470 5.470 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.192 1.192 21 H -0.192 1.192 22 C -0.240 4.240 23 C -0.118 4.118 24 C 0.380 3.620 25 F -0.166 7.166 26 F -0.159 7.159 27 F -0.161 7.161 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.253 0.747 34 H 0.254 0.746 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.026 -0.260 15.350 23.678 hybrid contribution -0.022 0.230 -0.225 0.322 sum -18.048 -0.029 15.126 23.548 Atomic orbital electron populations 1.23426 0.77659 1.05429 1.02453 1.88157 1.23106 1.23477 1.93987 1.23438 0.98619 0.90013 0.88924 0.83299 1.21126 0.94087 1.03016 0.80198 1.44425 1.08653 1.76604 1.08039 1.16068 0.84623 0.78161 0.81482 1.90915 1.23902 1.58619 1.76711 1.41799 1.10648 1.71686 1.06148 1.17066 0.88040 1.10067 0.90105 1.20531 0.99263 1.01507 0.92498 1.21171 0.91801 1.04870 1.00024 1.18026 0.93404 0.90740 0.91515 1.19683 1.08040 1.11681 1.13622 0.91074 1.26705 1.00455 0.93822 0.97409 1.69818 1.33091 1.13641 1.30436 0.85178 0.77525 0.78969 0.77519 1.18262 1.19233 1.19155 1.20922 0.97807 1.11337 0.93958 1.20525 0.92953 0.99896 0.98446 1.21346 0.74096 0.75269 0.91292 1.93205 1.71338 1.68444 1.83604 1.93176 1.43009 1.96180 1.83583 1.93222 1.85249 1.40711 1.96954 0.90577 0.87404 0.92515 0.89089 0.91114 0.74671 0.74646 0.85482 0.86262 0.90526 0.88820 0.87534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 10.70 113.37 1.21 1.25 16 2 O -0.37 -5.03 10.23 -148.98 -1.52 -6.55 16 3 C 0.05 0.66 2.21 30.59 0.07 0.72 16 4 H 0.15 0.88 7.79 -2.39 -0.02 0.86 16 5 C 0.14 2.78 5.10 86.38 0.44 3.22 16 6 N -0.72 -14.96 5.51 -478.55 -2.64 -17.59 16 7 C 0.70 22.76 8.40 179.05 1.50 24.27 16 8 O -0.62 -26.92 13.76 -3.98 -0.05 -26.98 16 9 N -0.65 -20.86 5.31 -316.78 -1.68 -22.54 16 10 C 0.04 1.78 6.31 38.57 0.24 2.02 16 11 C -0.12 -5.16 9.90 22.14 0.22 -4.94 16 12 C -0.16 -8.23 8.62 22.48 0.19 -8.04 16 13 C 0.07 3.64 5.55 -21.27 -0.12 3.52 16 14 C -0.50 -27.72 9.02 23.39 0.21 -27.50 16 15 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 16 C 0.03 1.43 5.42 85.24 0.46 1.90 16 17 N -0.84 -44.57 10.60 21.82 0.23 -44.34 16 18 Si 0.99 39.49 29.56 68.60 2.03 41.52 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 22 C -0.22 -11.63 9.74 22.48 0.22 -11.42 16 23 C -0.10 -4.78 8.61 22.13 0.19 -4.59 16 24 C 0.44 7.01 2.85 71.98 0.21 7.21 16 25 F -0.18 -3.80 16.83 44.97 0.76 -3.05 16 26 F -0.18 -2.67 15.50 44.97 0.70 -1.97 16 27 F -0.18 -3.16 16.71 44.97 0.75 -2.41 16 28 H 0.08 0.18 8.09 -2.39 -0.02 0.17 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.39 6.49 -2.39 -0.02 0.37 16 31 H 0.09 1.91 7.66 -2.39 -0.02 1.89 16 32 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 33 H 0.42 5.30 8.49 -92.71 -0.79 4.51 16 34 H 0.42 9.28 8.83 -92.71 -0.82 8.46 16 35 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 36 H 0.12 6.44 6.13 -2.91 -0.02 6.42 16 37 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 38 H 0.09 4.80 8.06 -2.91 -0.02 4.77 16 39 H 0.11 5.22 6.22 -2.91 -0.02 5.21 16 Total: -1.00 -71.79 345.80 3.15 -68.64 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: -0.47 Total: 27.65 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: 5.05 Total: -12.38 kcal Atomic # 7 Polarization: -80.39 SS G_CDS: -4.09 Total: -84.47 kcal Atomic # 8 Polarization: -31.95 SS G_CDS: -1.58 Total: -33.53 kcal Atomic # 9 Polarization: -9.63 SS G_CDS: 2.21 Total: -7.42 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Total: -71.79 3.15 -68.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733617006.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.901 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds