Wall clock time and date at job start Tue Mar 31 2020 16:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47378 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99925 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99596 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46504 * 179.97438 * 12 11 9 14 14 H 1.07992 * 120.00492 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99677 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99936 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47617 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46793 * 120.00394 * 17 15 13 20 20 H 1.48501 * 109.47279 * 240.00311 * 17 15 13 21 21 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 22 22 C 1.50696 * 120.00453 * 180.02562 * 21 6 5 23 23 F 1.39902 * 109.46745 * 179.97438 * 22 21 6 24 24 F 1.39893 * 109.47700 * 299.99821 * 22 21 6 25 25 F 1.39900 * 109.47221 * 60.00549 * 22 21 6 26 26 C 1.38127 * 119.97967 * 359.74390 * 21 6 5 27 27 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 29 29 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 31 31 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 34 34 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 35 35 H 0.97001 * 119.99768 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47664 * 299.99804 * 12 11 9 37 37 H 1.09001 * 109.47233 * 60.00066 * 12 11 9 38 38 H 0.97000 * 119.99669 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99012 * 180.25576 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0587 7.3496 0.0053 10 8 5.2611 7.1907 0.0050 11 7 3.5435 8.5951 0.0069 12 6 4.4360 9.7568 0.0089 13 6 3.6151 11.0207 0.0098 14 1 2.5367 10.9642 0.0095 15 6 4.2411 12.2492 0.0122 16 7 5.5545 12.3181 0.0131 17 14 3.2236 13.8158 0.0141 18 1 1.7799 13.4684 0.0132 19 1 3.5405 14.6103 1.2281 20 1 3.5418 14.6142 -1.1970 21 6 4.0592 2.5143 0.0000 22 6 5.5642 2.5925 0.0000 23 9 6.0983 1.2994 0.0000 24 9 5.9957 3.2757 -1.1419 25 9 5.9957 3.2747 1.1426 26 6 3.4313 1.2840 0.0053 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2120 2.3179 0.0005 31 1 1.3279 4.5112 0.0019 32 1 4.9073 4.9766 0.0016 33 1 2.5112 6.1805 -0.8856 34 1 2.5127 6.1782 0.8944 35 1 2.5819 8.7221 0.0068 36 1 5.0645 9.7308 0.8989 37 1 5.0651 9.7332 -0.8810 38 1 5.9948 13.1824 0.0144 39 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759771162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:06 Heat of formation + Delta-G solvation = -198.413073 kcal Electronic energy + Delta-G solvation = -28055.669174 eV Core-core repulsion = 23355.659158 eV Total energy + Delta-G solvation = -4700.010016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.19564 -47.72234 -47.60808 -40.52931 -39.25950 -38.14715 -35.04412 -34.27662 -32.47288 -32.17812 -30.17422 -28.33171 -27.22036 -26.12029 -25.80676 -23.02572 -22.11860 -21.70507 -19.97911 -19.12829 -18.68848 -18.47844 -17.80157 -16.89441 -16.75715 -16.42066 -15.99413 -15.65736 -15.45592 -15.45061 -14.86057 -14.67164 -14.54111 -14.24238 -14.06840 -13.95195 -13.78427 -13.77756 -13.69206 -13.38741 -13.14086 -12.83817 -12.81574 -12.69578 -12.06188 -11.96554 -11.89497 -11.53072 -11.17291 -11.03219 -10.97109 -10.40108 -9.86503 -9.54671 -9.47996 -9.34769 -8.83908 -8.06330 -7.48202 -6.23864 -4.31560 0.69354 1.25876 2.55451 2.97690 3.08411 3.10500 3.19011 3.26380 3.28926 3.29018 3.72587 3.94407 3.99846 4.29140 4.39114 4.45435 4.62596 4.73629 4.83313 4.94173 5.07883 5.12322 5.12544 5.15582 5.27322 5.30254 5.49930 5.57233 5.78769 5.98564 6.11843 6.83530 7.11367 7.18490 7.23403 7.40471 7.48758 7.55917 7.87495 8.42821 8.64133 8.88668 9.35052 10.86286 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002502 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.314211 B =11189.122599 C =12587.036723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.059 3.941 4 C -0.121 4.121 5 C -0.164 4.164 6 C 0.245 3.755 7 N -0.725 5.725 8 C 0.100 3.900 9 C 0.492 3.508 10 O -0.548 6.548 11 N -0.704 5.704 12 C 0.249 3.751 13 C -0.545 4.545 14 H 0.064 0.936 15 C 0.064 3.936 16 N -0.884 5.884 17 Si 0.905 3.095 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.282 1.282 21 C -0.231 4.231 22 C 0.513 3.487 23 F -0.178 7.178 24 F -0.174 7.174 25 F -0.174 7.174 26 C -0.054 4.054 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.414 0.586 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.393 0.607 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.266 0.734 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.331 -23.760 -0.024 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.013 3.987 4 C -0.140 4.140 5 C -0.187 4.187 6 C 0.137 3.863 7 N -0.357 5.357 8 C -0.028 4.028 9 C 0.275 3.725 10 O -0.427 6.427 11 N -0.353 5.353 12 C 0.128 3.872 13 C -0.584 4.584 14 H 0.083 0.917 15 C -0.140 4.140 16 N -0.521 5.521 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.238 4.238 22 C 0.458 3.542 23 F -0.159 7.159 24 F -0.155 7.155 25 F -0.155 7.155 26 C -0.073 4.073 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.254 0.746 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.076 0.924 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.271 -23.672 -0.023 25.804 hybrid contribution -0.571 1.239 0.002 1.364 sum -10.843 -22.433 -0.021 24.916 Atomic orbital electron populations 1.23024 0.78575 1.03871 1.01212 1.86066 1.21059 1.26261 1.89896 1.18452 0.91502 0.84494 1.04258 1.21219 1.00206 0.91575 1.01024 1.20483 0.91507 0.98396 1.08274 1.17363 0.91936 0.84239 0.92717 1.44726 1.09944 1.01246 1.79773 1.21216 0.94220 0.83964 1.03424 1.20264 0.89119 0.84889 0.78221 1.90688 1.15322 1.85716 1.51009 1.46403 1.11183 1.06029 1.71639 1.19182 0.89508 0.80479 0.98000 1.21228 0.93229 0.90375 1.53520 0.91740 1.24967 0.95054 0.99430 0.94595 1.69982 1.07871 1.25609 1.48650 0.86337 0.80064 0.82550 0.77812 1.19609 1.20757 1.20752 1.19078 0.90414 0.94087 1.20211 1.18108 0.88355 0.73643 0.74047 1.93148 1.88142 1.38356 1.96277 1.93244 1.91396 1.79860 1.51009 1.93246 1.91399 1.79923 1.50959 1.19839 0.92064 0.96546 0.98886 0.92755 0.92759 0.88350 0.84661 0.84377 0.74610 0.89079 0.89086 0.77380 0.95291 0.95293 0.92393 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.93 10.50 -19.76 -0.21 -3.14 16 3 C 0.06 0.59 6.69 -39.24 -0.26 0.33 16 4 C -0.12 -1.04 9.03 -39.46 -0.36 -1.39 16 5 C -0.16 -1.59 9.31 -39.39 -0.37 -1.95 16 6 C 0.24 2.99 6.55 -83.69 -0.55 2.44 16 7 N -0.72 -10.16 5.46 -59.76 -0.33 -10.49 16 8 C 0.10 1.28 5.39 -5.19 -0.03 1.25 16 9 C 0.49 9.09 7.90 -10.98 -0.09 9.01 16 10 O -0.55 -12.59 15.67 5.56 0.09 -12.50 16 11 N -0.70 -13.71 5.55 -61.47 -0.34 -14.05 16 12 C 0.25 6.34 5.43 -5.19 -0.03 6.32 16 13 C -0.55 -14.28 9.28 -34.44 -0.32 -14.60 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.88 -25.59 13.29 55.43 0.74 -24.85 16 17 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 C -0.23 -2.84 5.38 -104.44 -0.56 -3.40 16 22 C 0.51 6.84 2.80 36.00 0.10 6.94 16 23 F -0.18 -2.19 15.97 2.25 0.04 -2.16 16 24 F -0.17 -2.54 16.24 2.25 0.04 -2.50 16 25 F -0.17 -2.54 16.24 2.25 0.04 -2.50 16 26 C -0.05 -0.59 9.36 -39.46 -0.37 -0.96 16 27 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 28 H 0.05 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.78 6.29 -52.49 -0.33 0.45 16 31 H 0.14 1.05 6.73 -52.49 -0.35 0.70 16 32 H 0.41 6.76 4.86 -40.82 -0.20 6.56 16 33 H 0.09 0.94 7.95 -51.93 -0.41 0.52 16 34 H 0.09 0.94 7.95 -51.93 -0.41 0.52 16 35 H 0.39 6.28 8.32 -40.82 -0.34 5.94 16 36 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.14 1.41 7.15 -52.48 -0.38 1.03 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -32.36 347.06 -5.69 -38.04 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.02 Total: 6.85 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -1.93 Total: 6.73 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.07 Total: -49.38 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.12 Total: -15.64 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.11 Total: -7.16 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.36 -5.69 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759771162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.369 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds