Wall clock time and date at job start Tue Mar 31 2020 16:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36005 * 116.99661 * 2 1 4 4 C 1.38715 * 119.98115 * 0.02562 * 3 2 1 5 5 C 1.38096 * 120.01893 * 179.97438 * 4 3 2 6 6 C 1.38888 * 119.97716 * 0.02562 * 5 4 3 7 7 N 1.39935 * 120.01672 * 180.02562 * 6 5 4 8 8 C 1.46503 * 120.00203 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47378 * 179.97438 * 8 7 6 10 10 O 1.21281 * 119.99925 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00037 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99596 * 179.97438 * 11 9 8 13 13 C 1.50702 * 109.46504 * 179.97438 * 12 11 9 14 14 H 1.07992 * 120.00492 * 0.02562 * 13 12 11 15 15 C 1.37884 * 119.99677 * 179.97438 * 13 12 11 16 16 N 1.31517 * 119.99936 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47617 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46793 * 120.00394 * 17 15 13 20 20 H 1.48501 * 109.47279 * 240.00311 * 17 15 13 21 21 C 1.38841 * 119.96195 * 359.97438 * 6 5 4 22 22 C 1.50696 * 120.00453 * 180.02562 * 21 6 5 23 23 F 1.39902 * 109.46745 * 179.97438 * 22 21 6 24 24 F 1.39893 * 109.47700 * 299.99821 * 22 21 6 25 25 F 1.39900 * 109.47221 * 60.00549 * 22 21 6 26 26 C 1.38127 * 119.97967 * 359.74390 * 21 6 5 27 27 H 1.08996 * 109.47352 * 299.99796 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99821 * 1 2 3 29 29 H 1.09005 * 109.47329 * 179.97438 * 1 2 3 30 30 H 1.08000 * 119.99488 * 359.97438 * 4 3 2 31 31 H 1.07992 * 120.01142 * 180.02562 * 5 4 3 32 32 H 0.96997 * 120.00158 * 179.97438 * 7 6 5 33 33 H 1.09007 * 109.46962 * 299.99935 * 8 7 6 34 34 H 1.09001 * 109.47172 * 59.99620 * 8 7 6 35 35 H 0.97001 * 119.99768 * 359.97438 * 11 9 8 36 36 H 1.08993 * 109.47664 * 299.99804 * 12 11 9 37 37 H 1.09001 * 109.47233 * 60.00066 * 12 11 9 38 38 H 0.97000 * 119.99669 * 179.97438 * 16 15 13 39 39 H 1.08003 * 119.99012 * 180.25576 * 26 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2904 2.3749 0.0005 5 6 1.9165 3.6058 0.0011 6 6 3.3035 3.6789 0.0005 7 7 3.9387 4.9258 0.0016 8 6 3.1408 6.1545 0.0039 9 6 4.0587 7.3496 0.0053 10 8 5.2611 7.1907 0.0050 11 7 3.5435 8.5951 0.0069 12 6 4.4360 9.7568 0.0089 13 6 3.6151 11.0207 0.0098 14 1 2.5367 10.9642 0.0095 15 6 4.2411 12.2492 0.0122 16 7 5.5545 12.3181 0.0131 17 14 3.2236 13.8158 0.0141 18 1 1.7799 13.4684 0.0132 19 1 3.5405 14.6103 1.2281 20 1 3.5418 14.6142 -1.1970 21 6 4.0592 2.5143 0.0000 22 6 5.5642 2.5925 0.0000 23 9 6.0983 1.2994 0.0000 24 9 5.9957 3.2757 -1.1419 25 9 5.9957 3.2747 1.1426 26 6 3.4313 1.2840 0.0053 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2120 2.3179 0.0005 31 1 1.3279 4.5112 0.0019 32 1 4.9073 4.9766 0.0016 33 1 2.5112 6.1805 -0.8856 34 1 2.5127 6.1782 0.8944 35 1 2.5819 8.7221 0.0068 36 1 5.0645 9.7308 0.8989 37 1 5.0651 9.7332 -0.8810 38 1 5.9948 13.1824 0.0144 39 1 4.0191 0.3779 0.0091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759771162.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:35:05 Heat of formation + Delta-G solvation = -221.711962 kcal Electronic energy + Delta-G solvation = -28056.679489 eV Core-core repulsion = 23355.659158 eV Total energy + Delta-G solvation = -4701.020332 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.26408 -48.77109 -48.72011 -41.32528 -40.64018 -38.99829 -36.35515 -35.75762 -34.40518 -32.96996 -31.14273 -29.68235 -28.24470 -27.12718 -26.75697 -24.68770 -23.25814 -22.55340 -21.49517 -20.09662 -19.65603 -19.56146 -19.08179 -18.23436 -17.69069 -17.47464 -17.04627 -16.82987 -16.78812 -16.51158 -16.32608 -15.65263 -15.62875 -15.46400 -15.15598 -15.07441 -14.97917 -14.87818 -14.82332 -14.40016 -14.18915 -14.00900 -13.93155 -13.83857 -13.50048 -13.39517 -12.90447 -12.76329 -12.68509 -12.22311 -12.21552 -11.82952 -11.46779 -10.96451 -10.83431 -10.65784 -10.30576 -9.90722 -8.32441 -8.29922 -6.46428 -0.08050 0.47466 1.44254 1.45011 1.58388 1.59479 1.61206 1.94169 2.35713 2.39153 2.51092 2.61679 2.82598 3.03852 3.05789 3.35248 3.72137 3.77881 3.99377 4.13224 4.27609 4.31102 4.37644 4.50988 4.53099 4.70789 4.77561 4.89023 5.03729 5.08931 5.21797 5.26968 5.40660 5.44143 5.63576 5.82548 5.99679 6.35090 6.51585 6.64618 6.80955 7.21907 7.39778 8.82458 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002502 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.314211 B =11189.122599 C =12587.036723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.061 3.939 4 C -0.111 4.111 5 C -0.156 4.156 6 C 0.226 3.774 7 N -0.743 5.743 8 C 0.115 3.885 9 C 0.488 3.512 10 O -0.600 6.600 11 N -0.697 5.697 12 C 0.265 3.735 13 C -0.553 4.553 14 H 0.089 0.911 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.985 3.015 18 H -0.249 1.249 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.243 4.243 22 C 0.508 3.492 23 F -0.175 7.175 24 F -0.186 7.186 25 F -0.186 7.186 26 C -0.069 4.069 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.114 0.886 30 H 0.171 0.829 31 H 0.167 0.833 32 H 0.398 0.602 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.414 0.586 36 H -0.012 1.012 37 H -0.012 1.012 38 H 0.268 0.732 39 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.783 -24.223 -0.025 28.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.015 3.985 4 C -0.130 4.130 5 C -0.178 4.178 6 C 0.120 3.880 7 N -0.375 5.375 8 C -0.012 4.012 9 C 0.274 3.726 10 O -0.482 6.482 11 N -0.347 5.347 12 C 0.142 3.858 13 C -0.590 4.590 14 H 0.107 0.893 15 C -0.198 4.198 16 N -0.571 5.571 17 Si 0.808 3.192 18 H -0.172 1.172 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.249 4.249 22 C 0.454 3.546 23 F -0.157 7.157 24 F -0.167 7.167 25 F -0.167 7.167 26 C -0.089 4.089 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.188 0.812 31 H 0.184 0.816 32 H 0.236 0.764 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.251 0.749 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.077 0.923 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -14.813 -24.191 -0.024 28.366 hybrid contribution 0.802 1.207 0.002 1.449 sum -14.011 -22.985 -0.022 26.918 Atomic orbital electron populations 1.23354 0.76369 1.05537 1.02466 1.86061 1.23375 1.25976 1.89655 1.18597 0.91251 0.85502 1.03153 1.21585 1.01858 0.90446 0.99127 1.20834 0.90291 0.99992 1.06686 1.17595 0.93063 0.83240 0.94053 1.44786 1.09307 1.02179 1.81189 1.21277 0.92654 0.80505 1.06731 1.21315 0.89286 0.85908 0.76050 1.90670 1.18203 1.86517 1.52788 1.46049 1.11513 1.05086 1.72066 1.18581 0.89794 0.83241 0.94213 1.21652 0.94378 0.90410 1.52599 0.89316 1.26090 0.96147 1.03634 0.93947 1.70151 1.10219 1.26638 1.50116 0.85102 0.79200 0.77353 0.77504 1.17246 1.20705 1.20695 1.19069 0.89276 0.95007 1.21586 1.18380 0.89457 0.73406 0.73320 1.93142 1.88276 1.38017 1.96218 1.93212 1.91672 1.80211 1.51616 1.93214 1.91675 1.80273 1.51567 1.19909 0.93058 0.96078 0.99809 0.91409 0.91415 0.86762 0.81162 0.81551 0.76443 0.85476 0.85491 0.74897 0.99405 0.99411 0.92320 0.83730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.34 -5.33 10.50 -93.60 -0.98 -6.32 16 3 C 0.06 1.07 6.69 22.49 0.15 1.22 16 4 C -0.11 -1.46 9.03 22.35 0.20 -1.26 16 5 C -0.16 -2.41 9.31 22.39 0.21 -2.21 16 6 C 0.23 5.16 6.55 38.15 0.25 5.41 16 7 N -0.74 -20.15 5.46 -342.97 -1.87 -22.02 16 8 C 0.12 2.65 5.39 85.63 0.46 3.11 16 9 C 0.49 17.99 7.90 87.66 0.69 18.69 16 10 O -0.60 -28.81 15.67 -3.03 -0.05 -28.86 16 11 N -0.70 -26.90 5.55 -466.79 -2.59 -29.49 16 12 C 0.26 14.00 5.43 85.63 0.46 14.47 16 13 C -0.55 -28.87 9.28 25.60 0.24 -28.63 16 14 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 15 C 0.00 0.07 5.46 84.66 0.46 0.53 16 16 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 17 Si 0.99 41.22 29.54 68.60 2.03 43.24 16 18 H -0.25 -9.45 7.11 99.48 0.71 -8.75 16 19 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 21 C -0.24 -5.91 5.38 -19.75 -0.11 -6.01 16 22 C 0.51 14.12 2.80 71.23 0.20 14.32 16 23 F -0.18 -4.50 15.97 44.97 0.72 -3.79 16 24 F -0.19 -5.72 16.24 44.97 0.73 -4.99 16 25 F -0.19 -5.73 16.24 44.97 0.73 -5.00 16 26 C -0.07 -1.46 9.36 22.35 0.21 -1.25 16 27 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 28 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 29 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.17 1.01 6.29 -2.91 -0.02 0.99 16 31 H 0.17 1.58 6.73 -2.91 -0.02 1.56 16 32 H 0.40 13.40 4.86 -92.71 -0.45 12.95 16 33 H 0.13 2.06 7.95 -2.38 -0.02 2.04 16 34 H 0.13 2.06 7.95 -2.39 -0.02 2.04 16 35 H 0.41 12.30 8.32 -92.71 -0.77 11.53 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.14 2.85 7.15 -2.91 -0.02 2.83 16 Total: -1.00 -75.48 347.06 3.46 -72.02 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.09 Total: 20.94 kcal Atomic # 6 Polarization: 15.07 SS G_CDS: 4.54 Total: 19.62 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -4.18 Total: -106.87 kcal Atomic # 8 Polarization: -34.15 SS G_CDS: -1.03 Total: -35.18 kcal Atomic # 9 Polarization: -15.96 SS G_CDS: 2.18 Total: -13.78 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -75.48 3.46 -72.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759771162.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.689 kcal (2) G-P(sol) polarization free energy of solvation -75.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds