Wall clock time and date at job start Tue Mar 31 2020 16:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 116.99717 * 2 1 4 4 C 1.38190 * 120.00432 * 0.25924 * 3 2 1 5 5 C 1.39761 * 119.84957 * 180.22955 * 4 3 2 6 6 C 1.47362 * 120.06509 * 179.76145 * 5 4 3 7 7 N 1.29852 * 119.99884 * 179.72547 * 6 5 4 8 8 N 1.40103 * 120.00098 * 180.02562 * 7 6 5 9 9 C 1.38553 * 120.00425 * 180.02562 * 8 7 6 10 10 N 1.32494 * 119.18972 * 359.72695 * 9 8 7 11 11 C 1.32262 * 120.76875 * 179.71957 * 10 9 8 12 12 C 1.38820 * 119.16434 * 0.54408 * 11 10 9 13 13 F 1.35103 * 120.74234 * 179.70794 * 12 11 10 14 14 C 1.38810 * 118.51298 * 359.73718 * 12 11 10 15 15 N 1.32263 * 119.17152 * 359.97438 * 14 12 11 16 16 C 1.39836 * 119.87176 * 359.48852 * 5 4 3 17 17 C 1.37767 * 120.00940 * 0.27911 * 16 5 4 18 18 C 1.38960 * 120.14822 * 359.97224 * 17 16 5 19 19 O 1.35707 * 119.93472 * 180.02562 * 18 17 16 20 20 C 1.34788 * 116.99931 * 354.38473 * 19 18 17 21 21 H 1.08009 * 120.00086 * 5.06579 * 20 19 18 22 22 C 1.38603 * 120.00071 * 185.06349 * 20 19 18 23 23 N 1.31593 * 120.00071 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99904 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47417 * 89.99878 * 24 22 20 26 26 H 1.48497 * 109.47188 * 210.00220 * 24 22 20 27 27 H 1.48508 * 109.47072 * 329.99907 * 24 22 20 28 28 H 1.09006 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47191 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47634 * 59.99947 * 1 2 3 31 31 H 1.08003 * 120.08226 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.99936 * 359.72691 * 6 5 4 33 33 H 0.97007 * 119.99963 * 359.97438 * 8 7 6 34 34 H 1.08004 * 120.42237 * 180.27742 * 11 10 9 35 35 H 1.08008 * 120.41832 * 179.97438 * 14 12 11 36 36 H 1.08002 * 119.99483 * 180.29502 * 16 5 4 37 37 H 1.07995 * 119.92710 * 179.97438 * 17 16 5 38 38 H 0.96995 * 119.99760 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2936 2.3704 0.0054 5 6 1.9313 3.6140 0.0005 6 6 1.1334 4.8529 0.0010 7 7 1.7273 6.0076 0.0018 8 7 0.9687 7.1855 0.0028 9 6 1.6024 8.4177 0.0032 10 7 2.9265 8.4634 0.0081 11 6 3.5636 9.6224 0.0031 12 6 2.8271 10.7992 0.0040 13 9 3.4450 12.0006 0.0048 14 6 1.4416 10.7138 0.0046 15 7 0.8692 9.5214 0.0037 16 6 3.3281 3.6804 0.0010 17 6 4.0730 2.5214 0.0005 18 6 3.4395 1.2846 0.0001 19 8 4.1775 0.1458 0.0001 20 6 5.5134 0.2823 -0.1170 21 1 5.9572 1.2670 -0.1230 22 6 6.3175 -0.8410 -0.2297 23 7 7.6217 -0.7077 -0.3445 24 14 5.5500 -2.5439 -0.2201 25 1 5.2199 -2.9460 -1.6110 26 1 6.5098 -3.5162 0.3618 27 1 4.3099 -2.5233 0.5967 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2149 2.3154 0.0092 32 1 0.0547 4.8004 0.0006 33 1 -0.0002 7.1384 0.0024 34 1 4.6432 9.6531 0.0026 35 1 0.8385 11.6098 0.0057 36 1 3.8230 4.6403 0.0021 37 1 5.1517 2.5743 0.0005 38 1 8.1844 -1.4938 -0.4230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760262072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:58 Heat of formation + Delta-G solvation = 33.494066 kcal Electronic energy + Delta-G solvation = -26035.380287 eV Core-core repulsion = 21796.115705 eV Total energy + Delta-G solvation = -4239.264581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.15044 -41.15614 -39.85039 -37.83656 -37.57134 -36.10538 -34.13868 -33.20169 -32.47119 -30.33354 -29.72584 -28.65566 -26.76881 -25.56729 -25.24349 -23.77138 -22.75287 -21.70264 -20.42254 -18.88296 -18.40222 -17.98237 -17.76102 -17.67245 -16.89780 -16.31517 -15.95718 -15.45673 -15.37755 -15.11245 -14.94708 -14.53597 -14.49852 -14.06890 -13.89090 -13.78299 -13.37516 -13.32455 -13.03225 -12.38804 -12.25025 -12.03422 -11.75007 -11.71764 -11.28531 -11.19550 -10.94221 -10.88775 -10.87019 -10.30537 -10.16406 -9.98268 -9.54601 -9.39312 -8.98196 -8.38280 -8.02230 -7.04568 -6.53835 -4.14813 0.50728 0.68329 1.34297 2.03531 2.04454 2.76201 3.19512 3.23830 3.40869 3.49355 3.64918 3.71091 3.78194 4.10301 4.18134 4.38872 4.46631 4.51951 4.58285 4.77912 4.99374 5.10433 5.24783 5.34371 5.38536 5.47503 5.67797 5.72297 5.85348 5.93078 6.05649 6.11691 6.36380 6.38825 6.71536 6.89118 6.95699 7.12503 7.34931 7.54027 7.56340 7.82732 7.99458 8.25949 8.79910 9.40856 10.52084 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002286 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.685746 B =12246.585375 C =13909.050475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.308 6.308 3 C 0.051 3.949 4 C -0.134 4.134 5 C -0.131 4.131 6 C 0.143 3.857 7 N -0.243 5.243 8 N -0.545 5.545 9 C 0.579 3.421 10 N -0.505 5.505 11 C 0.172 3.828 12 C -0.073 4.073 13 F -0.127 7.127 14 C 0.170 3.830 15 N -0.549 5.549 16 C -0.043 4.043 17 C -0.211 4.211 18 C 0.158 3.842 19 O -0.191 6.191 20 C -0.387 4.387 21 H 0.112 0.888 22 C 0.066 3.934 23 N -0.867 5.867 24 Si 0.905 3.095 25 H -0.272 1.272 26 H -0.281 1.281 27 H -0.254 1.254 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.125 0.875 32 H 0.109 0.891 33 H 0.398 0.602 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.128 0.872 37 H 0.144 0.856 38 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.626 15.860 0.626 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.222 6.222 3 C 0.006 3.994 4 C -0.155 4.155 5 C -0.135 4.135 6 C -0.065 4.065 7 N -0.049 5.049 8 N -0.270 5.270 9 C 0.223 3.777 10 N -0.224 5.224 11 C 0.001 3.999 12 C -0.101 4.101 13 F -0.106 7.106 14 C 0.001 3.999 15 N -0.271 5.271 16 C -0.063 4.063 17 C -0.230 4.230 18 C 0.102 3.898 19 O -0.094 6.094 20 C -0.462 4.462 21 H 0.129 0.871 22 C -0.139 4.139 23 N -0.503 5.503 24 Si 0.730 3.270 25 H -0.197 1.197 26 H -0.207 1.207 27 H -0.178 1.178 28 H 0.110 0.890 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.143 0.857 32 H 0.126 0.874 33 H 0.239 0.761 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.146 0.854 37 H 0.162 0.838 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.938 14.878 0.631 20.397 hybrid contribution -1.146 0.322 -0.038 1.191 sum -15.084 15.200 0.593 21.422 Atomic orbital electron populations 1.22921 0.80040 1.03106 1.00526 1.86192 1.19739 1.26326 1.89947 1.17941 0.89209 0.84472 1.07782 1.20661 0.98516 0.90527 1.05842 1.17470 0.92506 0.88738 1.14788 1.24356 0.97181 0.90622 0.94342 1.75150 1.21454 0.91388 1.16931 1.44729 1.06545 0.99967 1.75748 1.18695 0.85274 0.84619 0.89090 1.68166 1.08444 1.27731 1.18057 1.23352 1.01677 0.85242 0.89645 1.19213 0.93320 0.82996 1.14542 1.91515 1.82586 1.41845 1.94702 1.23013 0.90785 0.95433 0.90641 1.67806 1.40193 0.97386 1.21739 1.21024 0.92214 0.98108 0.94980 1.21027 1.01387 0.90424 1.10192 1.18612 0.87706 0.87092 0.96386 1.83613 1.20434 1.27488 1.77834 1.20894 0.77153 0.97245 1.50865 0.87123 1.24506 0.94546 0.99692 0.95163 1.69660 1.03117 1.31955 1.45604 0.86167 0.79846 0.81467 0.79539 1.19691 1.20697 1.17785 0.89023 0.93342 0.93310 0.85741 0.87385 0.76138 0.80170 0.80309 0.85421 0.83819 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.81 101.05 0.99 1.35 16 2 O -0.31 -5.75 10.28 -34.22 -0.35 -6.10 16 3 C 0.05 0.98 6.70 -39.12 -0.26 0.72 16 4 C -0.13 -2.08 8.77 -39.03 -0.34 -2.43 16 5 C -0.13 -2.07 5.87 -105.02 -0.62 -2.69 16 6 C 0.14 1.88 10.74 -14.68 -0.16 1.72 16 7 N -0.24 -3.52 10.15 32.15 0.33 -3.20 16 8 N -0.55 -6.87 6.43 29.80 0.19 -6.68 16 9 C 0.58 7.58 8.54 -322.58 -2.76 4.82 16 10 N -0.50 -6.84 9.94 -13.84 -0.14 -6.98 16 11 C 0.17 1.77 11.30 -17.15 -0.19 1.57 16 12 C -0.07 -0.68 7.38 -39.15 -0.29 -0.97 16 13 F -0.13 -1.14 17.30 2.25 0.04 -1.11 16 14 C 0.17 1.49 11.29 -17.15 -0.19 1.30 16 15 N -0.55 -6.14 10.46 -13.84 -0.14 -6.29 16 16 C -0.04 -0.76 9.57 -39.16 -0.37 -1.14 16 17 C -0.21 -4.35 9.14 -39.49 -0.36 -4.71 16 18 C 0.16 3.52 6.67 -38.83 -0.26 3.27 16 19 O -0.19 -4.94 8.35 -14.31 -0.12 -5.06 16 20 C -0.39 -10.51 9.94 30.87 0.31 -10.20 16 21 H 0.11 3.03 5.42 -52.48 -0.28 2.75 16 22 C 0.07 1.80 5.49 -17.52 -0.10 1.70 16 23 N -0.87 -24.25 13.97 55.48 0.77 -23.48 16 24 Si 0.90 21.25 28.61 -169.99 -4.86 16.39 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.51 7.65 -51.93 -0.40 0.11 16 30 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 31 H 0.12 1.48 6.29 -52.48 -0.33 1.15 16 32 H 0.11 1.03 8.02 -52.49 -0.42 0.60 16 33 H 0.40 3.92 8.77 -182.59 -1.60 2.32 16 34 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 35 H 0.18 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 2.20 7.54 -52.49 -0.40 1.81 16 37 H 0.14 3.08 5.62 -52.49 -0.29 2.79 16 38 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 347.56 15.07 5.24 5.24 Total: -1.00 -31.72 347.56 -8.18 -39.90 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.53 Total: 3.03 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -4.60 Total: -5.67 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 1.01 Total: -46.62 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.47 Total: -11.16 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.72 -8.18 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760262072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.390 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds