Wall clock time and date at job start Tue Mar 31 2020 16:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35957 * 116.99717 * 2 1 4 4 C 1.38190 * 120.00432 * 0.25924 * 3 2 1 5 5 C 1.39761 * 119.84957 * 180.22955 * 4 3 2 6 6 C 1.47362 * 120.06509 * 179.76145 * 5 4 3 7 7 N 1.29852 * 119.99884 * 179.72547 * 6 5 4 8 8 N 1.40103 * 120.00098 * 180.02562 * 7 6 5 9 9 C 1.38553 * 120.00425 * 180.02562 * 8 7 6 10 10 N 1.32494 * 119.18972 * 359.72695 * 9 8 7 11 11 C 1.32262 * 120.76875 * 179.71957 * 10 9 8 12 12 C 1.38820 * 119.16434 * 0.54408 * 11 10 9 13 13 F 1.35103 * 120.74234 * 179.70794 * 12 11 10 14 14 C 1.38810 * 118.51298 * 359.73718 * 12 11 10 15 15 N 1.32263 * 119.17152 * 359.97438 * 14 12 11 16 16 C 1.39836 * 119.87176 * 359.48852 * 5 4 3 17 17 C 1.37767 * 120.00940 * 0.27911 * 16 5 4 18 18 C 1.38960 * 120.14822 * 359.97224 * 17 16 5 19 19 O 1.35707 * 119.93472 * 180.02562 * 18 17 16 20 20 C 1.34788 * 116.99931 * 354.38473 * 19 18 17 21 21 H 1.08009 * 120.00086 * 5.06579 * 20 19 18 22 22 C 1.38603 * 120.00071 * 185.06349 * 20 19 18 23 23 N 1.31593 * 120.00071 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99904 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47417 * 89.99878 * 24 22 20 26 26 H 1.48497 * 109.47188 * 210.00220 * 24 22 20 27 27 H 1.48508 * 109.47072 * 329.99907 * 24 22 20 28 28 H 1.09006 * 109.46971 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47191 * 299.99840 * 1 2 3 30 30 H 1.08998 * 109.47634 * 59.99947 * 1 2 3 31 31 H 1.08003 * 120.08226 * 359.97438 * 4 3 2 32 32 H 1.07998 * 119.99936 * 359.72691 * 6 5 4 33 33 H 0.97007 * 119.99963 * 359.97438 * 8 7 6 34 34 H 1.08004 * 120.42237 * 180.27742 * 11 10 9 35 35 H 1.08008 * 120.41832 * 179.97438 * 14 12 11 36 36 H 1.08002 * 119.99483 * 180.29502 * 16 5 4 37 37 H 1.07995 * 119.92710 * 179.97438 * 17 16 5 38 38 H 0.96995 * 119.99760 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2936 2.3704 0.0054 5 6 1.9313 3.6140 0.0005 6 6 1.1334 4.8529 0.0010 7 7 1.7273 6.0076 0.0018 8 7 0.9687 7.1855 0.0028 9 6 1.6024 8.4177 0.0032 10 7 2.9265 8.4634 0.0081 11 6 3.5636 9.6224 0.0031 12 6 2.8271 10.7992 0.0040 13 9 3.4450 12.0006 0.0048 14 6 1.4416 10.7138 0.0046 15 7 0.8692 9.5214 0.0037 16 6 3.3281 3.6804 0.0010 17 6 4.0730 2.5214 0.0005 18 6 3.4395 1.2846 0.0001 19 8 4.1775 0.1458 0.0001 20 6 5.5134 0.2823 -0.1170 21 1 5.9572 1.2670 -0.1230 22 6 6.3175 -0.8410 -0.2297 23 7 7.6217 -0.7077 -0.3445 24 14 5.5500 -2.5439 -0.2201 25 1 5.2199 -2.9460 -1.6110 26 1 6.5098 -3.5162 0.3618 27 1 4.3099 -2.5233 0.5967 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.2149 2.3154 0.0092 32 1 0.0547 4.8004 0.0006 33 1 -0.0002 7.1384 0.0024 34 1 4.6432 9.6531 0.0026 35 1 0.8385 11.6098 0.0057 36 1 3.8230 4.6403 0.0021 37 1 5.1517 2.5743 0.0005 38 1 8.1844 -1.4938 -0.4230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760262072.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:57 Heat of formation + Delta-G solvation = 14.101829 kcal Electronic energy + Delta-G solvation = -26036.221197 eV Core-core repulsion = 21796.115705 eV Total energy + Delta-G solvation = -4240.105492 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.90280 -41.99813 -41.34989 -39.38018 -38.73853 -37.42043 -34.98040 -34.56924 -34.09960 -31.55773 -31.11109 -29.80955 -27.86760 -27.30208 -26.11847 -24.86311 -23.93463 -23.18508 -21.66777 -19.96282 -19.80367 -19.25421 -19.18884 -18.46670 -18.07889 -17.35083 -17.11053 -16.72291 -16.66344 -16.22057 -16.06179 -15.81049 -15.51650 -15.37592 -15.25791 -15.22372 -14.90919 -14.20196 -14.12245 -14.12102 -13.78221 -13.12033 -13.08389 -12.87925 -12.74293 -12.63503 -12.14216 -12.10199 -12.05235 -11.98180 -11.52256 -11.13840 -11.13096 -10.82526 -10.24239 -9.66636 -9.21871 -8.51830 -8.50245 -6.18873 -0.41183 -0.09211 0.12305 0.54624 1.09706 1.32479 1.34428 1.53194 1.57099 2.29940 2.54557 2.62177 2.79863 2.87362 2.90568 2.98261 3.12576 3.28779 3.71878 3.75365 3.80897 3.98212 4.26204 4.29867 4.42314 4.46300 4.54983 4.57306 4.62989 4.80569 4.84813 4.94039 5.19359 5.24160 5.47166 5.50339 5.59526 5.66508 5.79282 6.02407 6.04457 6.60248 6.65291 6.83741 7.32854 7.57880 8.60604 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.016656 B = 0.002286 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.685746 B =12246.585375 C =13909.050475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.340 6.340 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.095 4.095 6 C 0.142 3.858 7 N -0.260 5.260 8 N -0.541 5.541 9 C 0.560 3.440 10 N -0.542 5.542 11 C 0.162 3.838 12 C -0.064 4.064 13 F -0.123 7.123 14 C 0.176 3.824 15 N -0.550 5.550 16 C -0.060 4.060 17 C -0.212 4.212 18 C 0.111 3.889 19 O -0.229 6.229 20 C -0.398 4.398 21 H 0.086 0.914 22 C 0.014 3.986 23 N -0.918 5.918 24 Si 0.967 3.033 25 H -0.267 1.267 26 H -0.266 1.266 27 H -0.264 1.264 28 H 0.109 0.891 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.179 0.821 32 H 0.161 0.839 33 H 0.412 0.588 34 H 0.200 0.800 35 H 0.219 0.781 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.287 18.272 0.682 26.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.256 6.256 3 C 0.008 3.992 4 C -0.136 4.136 5 C -0.099 4.099 6 C -0.068 4.068 7 N -0.066 5.066 8 N -0.268 5.268 9 C 0.204 3.796 10 N -0.262 5.262 11 C -0.006 4.006 12 C -0.091 4.091 13 F -0.102 7.102 14 C 0.007 3.993 15 N -0.272 5.272 16 C -0.081 4.081 17 C -0.231 4.231 18 C 0.060 3.940 19 O -0.135 6.135 20 C -0.474 4.474 21 H 0.104 0.896 22 C -0.185 4.185 23 N -0.559 5.559 24 Si 0.790 3.210 25 H -0.192 1.192 26 H -0.191 1.191 27 H -0.188 1.188 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.256 0.744 34 H 0.217 0.783 35 H 0.235 0.765 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.644 17.368 0.688 25.490 hybrid contribution -0.100 0.213 -0.042 0.239 sum -18.744 17.582 0.646 25.707 Atomic orbital electron populations 1.23368 0.76556 1.05262 1.02659 1.86164 1.23403 1.26191 1.89804 1.18147 0.88204 0.86211 1.06641 1.21127 1.00825 0.88575 1.03113 1.17861 0.91677 0.90699 1.09618 1.24350 0.99108 0.88768 0.94547 1.74988 1.23782 0.92635 1.15226 1.44533 1.07065 0.99162 1.76049 1.18931 0.85507 0.85247 0.89928 1.68137 1.09136 1.29393 1.19574 1.23706 1.02756 0.85019 0.89167 1.19204 0.93602 0.82737 1.13518 1.91536 1.82604 1.41515 1.94562 1.23667 0.91010 0.95852 0.88737 1.67896 1.39979 0.97530 1.21822 1.21087 0.93625 0.97020 0.96362 1.20989 1.00640 0.91453 1.10061 1.19211 0.89453 0.86811 0.98509 1.83574 1.19212 1.28796 1.81912 1.20777 0.78556 0.96493 1.51560 0.89646 1.25226 0.94954 1.02987 0.95383 1.69740 1.04160 1.32827 1.49135 0.85259 0.78645 0.77692 0.79440 1.19157 1.19105 1.18823 0.87273 0.91001 0.91010 0.80422 0.82255 0.74436 0.78298 0.76479 0.85130 0.86337 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -12.20 10.28 -79.09 -0.81 -13.01 16 3 C 0.05 1.99 6.70 22.57 0.15 2.14 16 4 C -0.12 -3.13 8.77 22.63 0.20 -2.94 16 5 C -0.10 -2.72 5.87 -20.12 -0.12 -2.83 16 6 C 0.14 3.06 10.74 87.39 0.94 4.00 16 7 N -0.26 -6.76 10.15 -52.21 -0.53 -7.29 16 8 N -0.54 -11.91 6.43 -59.65 -0.38 -12.29 16 9 C 0.56 13.34 8.54 261.41 2.23 15.57 16 10 N -0.54 -13.91 9.94 -197.70 -1.96 -15.88 16 11 C 0.16 3.08 11.30 84.77 0.96 4.04 16 12 C -0.06 -1.01 7.38 22.55 0.17 -0.84 16 13 F -0.12 -1.87 17.30 44.97 0.78 -1.10 16 14 C 0.18 2.48 11.29 84.76 0.96 3.44 16 15 N -0.55 -10.65 10.46 -197.70 -2.07 -12.71 16 16 C -0.06 -2.16 9.57 22.54 0.22 -1.95 16 17 C -0.21 -9.30 9.14 22.33 0.20 -9.09 16 18 C 0.11 5.21 6.67 22.75 0.15 5.36 16 19 O -0.23 -12.59 8.35 -7.86 -0.07 -12.66 16 20 C -0.40 -23.50 9.94 67.91 0.67 -22.83 16 21 H 0.09 5.24 5.42 -2.91 -0.02 5.23 16 22 C 0.01 0.79 5.49 84.82 0.47 1.26 16 23 N -0.92 -54.96 13.97 21.61 0.30 -54.66 16 24 Si 0.97 46.20 28.61 68.60 1.96 48.16 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.26 -12.81 7.11 99.48 0.71 -12.10 16 28 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 29 H 0.07 1.14 7.65 -2.39 -0.02 1.12 16 30 H 0.07 1.14 7.67 -2.39 -0.02 1.12 16 31 H 0.18 2.95 6.29 -2.91 -0.02 2.93 16 32 H 0.16 1.88 8.02 -2.91 -0.02 1.85 16 33 H 0.41 6.48 8.77 -213.31 -1.87 4.61 16 34 H 0.20 2.71 8.06 -2.91 -0.02 2.69 16 35 H 0.22 1.25 8.06 -2.91 -0.02 1.22 16 36 H 0.13 4.57 7.54 -2.91 -0.02 4.54 16 37 H 0.12 5.71 5.62 -2.91 -0.02 5.69 16 38 H 0.29 15.66 8.31 -92.71 -0.77 14.88 16 Total: -1.00 -76.55 347.56 4.81 -71.74 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.72 Total: 12.94 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: 8.31 Total: -3.24 kcal Atomic # 7 Polarization: -98.19 SS G_CDS: -4.64 Total: -102.83 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.88 Total: -25.67 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.78 Total: -1.10 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.96 Total: 48.16 kcal Total: -76.55 4.81 -71.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760262072.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.841 kcal (2) G-P(sol) polarization free energy of solvation -76.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds