Wall clock time and date at job start Tue Mar 31 2020 16:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00602 * 2 1 4 4 N 1.34784 * 119.99794 * 179.97438 * 2 1 3 5 5 C 1.39550 * 120.00129 * 184.50788 * 4 2 1 6 6 C 1.39080 * 119.93069 * 325.24452 * 5 4 2 7 7 C 1.37693 * 120.10101 * 180.25586 * 6 5 4 8 8 C 1.39753 * 119.96713 * 359.47449 * 7 6 5 9 9 C 1.47578 * 120.06432 * 180.27626 * 8 7 6 10 10 O 1.21609 * 120.00354 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99845 * 179.97438 * 9 8 7 12 12 C 1.40530 * 120.00249 * 180.02562 * 11 9 8 13 13 C 1.40664 * 126.08362 * 359.68744 * 12 11 9 14 14 N 1.30901 * 108.38617 * 179.81695 * 13 12 11 15 15 N 1.40067 * 108.41193 * 0.44620 * 14 13 12 16 16 C 1.37323 * 126.06505 * 179.67842 * 15 14 13 17 17 H 1.08006 * 119.99382 * 175.01419 * 16 15 14 18 18 C 1.38990 * 120.00280 * 355.01622 * 16 15 14 19 19 N 1.31293 * 119.99835 * 5.03002 * 18 16 15 20 20 Si 1.86797 * 119.99730 * 185.02529 * 18 16 15 21 21 H 1.48505 * 109.46857 * 95.00227 * 20 18 16 22 22 H 1.48501 * 109.47156 * 214.99819 * 20 18 16 23 23 H 1.48491 * 109.47421 * 335.00083 * 20 18 16 24 24 C 1.35697 * 126.08619 * 180.02562 * 12 11 9 25 25 C 1.39753 * 119.86518 * 0.24939 * 8 7 6 26 26 C 1.37870 * 119.89648 * 0.02562 * 25 8 7 27 27 F 1.35105 * 119.98168 * 179.97438 * 26 25 8 28 28 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47066 * 300.00691 * 1 2 3 30 30 H 1.08993 * 109.46784 * 60.00526 * 1 2 3 31 31 H 0.96999 * 119.99726 * 4.50060 * 4 2 1 32 32 H 1.07993 * 119.95099 * 359.97438 * 6 5 4 33 33 H 1.07996 * 120.01650 * 179.75091 * 7 6 5 34 34 H 0.97007 * 120.00193 * 0.02562 * 11 9 8 35 35 H 1.08002 * 125.80432 * 0.02562 * 13 12 11 36 36 H 0.96996 * 119.99980 * 179.97438 * 19 18 16 37 37 H 1.07996 * 126.24902 * 359.96366 * 24 12 11 38 38 H 1.08004 * 120.04925 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5732 -1.1692 0.0955 6 6 4.3110 -0.1539 -0.5038 7 6 5.6852 -0.1552 -0.4167 8 6 6.3393 -1.1721 0.2841 9 6 7.8117 -1.1722 0.3839 10 8 8.4571 -0.2872 -0.1443 11 7 8.4411 -2.1533 1.0606 12 6 9.8432 -2.1532 1.1561 13 6 10.7119 -1.2010 0.5929 14 7 11.9411 -1.5321 0.8979 15 7 11.9070 -2.7093 1.6560 16 6 12.9953 -3.3775 2.1609 17 1 12.8527 -4.2349 2.8021 18 6 14.2802 -2.9504 1.8470 19 7 14.4547 -1.8516 1.1499 20 14 15.7586 -3.9397 2.4170 21 1 16.1832 -4.8635 1.3345 22 1 16.8745 -3.0170 2.7464 23 1 15.3934 -4.7252 3.6231 24 6 10.6003 -3.0752 1.8028 25 6 5.5962 -2.1885 0.8907 26 6 4.2208 -2.1848 0.7952 27 9 3.5008 -3.1668 1.3805 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6981 -2.0060 -0.0650 32 1 3.8056 0.6342 -1.0421 33 1 6.2570 0.6316 -0.8860 34 1 7.9264 -2.8595 1.4817 35 1 10.4150 -0.3410 0.0109 36 1 15.3514 -1.5533 0.9311 37 1 10.2355 -3.9401 2.3367 38 1 6.0987 -2.9760 1.4327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764958302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:48 Heat of formation + Delta-G solvation = 4.322796 kcal Electronic energy + Delta-G solvation = -26492.154468 eV Core-core repulsion = 22251.624925 eV Total energy + Delta-G solvation = -4240.529543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.21733 -40.89286 -40.05395 -39.09575 -37.76886 -35.20106 -34.33299 -33.22368 -31.49709 -30.76236 -30.26252 -29.23974 -27.60226 -25.06760 -24.13449 -23.03696 -21.38689 -20.95243 -20.49947 -19.43952 -18.69979 -17.79497 -17.46180 -17.27087 -16.50797 -16.24530 -15.84189 -15.58177 -15.45954 -15.09669 -14.68119 -14.59848 -14.38321 -14.02575 -13.76229 -13.40538 -13.24150 -13.20325 -12.95958 -12.85438 -12.49008 -12.36703 -11.90138 -11.69087 -11.44662 -11.28542 -10.95285 -10.81789 -10.53192 -10.33351 -10.18670 -9.33079 -9.18533 -9.14730 -8.82090 -8.52127 -8.06768 -6.71483 -6.57075 -4.23626 0.47468 0.93529 2.02902 2.50288 2.80078 2.99042 3.04704 3.10324 3.48466 3.50002 3.79692 3.84514 3.87624 4.18570 4.42383 4.45023 4.59692 4.65153 4.84639 4.88563 4.90402 5.00723 5.06129 5.21583 5.30773 5.57032 5.70546 5.79751 6.03391 6.13572 6.24156 6.44559 6.57967 6.80027 6.88404 6.94424 7.09023 7.22102 7.57183 7.84835 8.13177 8.25472 8.60179 8.79963 9.36509 9.65573 10.39083 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.002064 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.015809 B =13561.804771 C =14217.588968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.511 3.489 3 O -0.521 6.521 4 N -0.670 5.670 5 C 0.126 3.874 6 C -0.102 4.102 7 C -0.052 4.052 8 C -0.101 4.101 9 C 0.540 3.460 10 O -0.528 6.528 11 N -0.614 5.614 12 C -0.062 4.062 13 C -0.029 4.029 14 N -0.261 5.261 15 N -0.142 5.142 16 C -0.323 4.323 17 H 0.117 0.883 18 C 0.046 3.954 19 N -0.768 5.768 20 Si 0.935 3.065 21 H -0.271 1.271 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.082 4.082 25 C -0.108 4.108 26 C 0.066 3.934 27 F -0.136 7.136 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.415 0.585 32 H 0.154 0.846 33 H 0.150 0.850 34 H 0.396 0.604 35 H 0.177 0.823 36 H 0.275 0.725 37 H 0.146 0.854 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.710 -2.723 -1.488 25.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.300 3.700 3 O -0.395 6.395 4 N -0.316 5.316 5 C 0.030 3.970 6 C -0.122 4.122 7 C -0.071 4.071 8 C -0.106 4.106 9 C 0.326 3.674 10 O -0.406 6.406 11 N -0.256 5.256 12 C -0.168 4.168 13 C -0.205 4.205 14 N -0.092 5.092 15 N 0.091 4.909 16 C -0.455 4.455 17 H 0.134 0.866 18 C -0.171 4.171 19 N -0.395 5.395 20 Si 0.759 3.241 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.188 1.188 24 C -0.233 4.233 25 C -0.128 4.128 26 C 0.045 3.955 27 F -0.115 7.115 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.119 0.881 31 H 0.251 0.749 32 H 0.172 0.828 33 H 0.167 0.833 34 H 0.230 0.770 35 H 0.194 0.806 36 H 0.086 0.914 37 H 0.164 0.836 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -23.485 -0.889 -2.025 23.589 hybrid contribution -0.980 -1.864 0.775 2.244 sum -24.465 -2.753 -1.250 24.651 Atomic orbital electron populations 1.21855 0.90215 1.04755 1.05953 1.21092 0.91049 0.82892 0.74955 1.90761 1.70261 1.31146 1.47363 1.43497 1.04642 1.10532 1.72976 1.17860 0.83464 0.96928 0.98751 1.21183 0.93262 0.98582 0.99207 1.21303 0.93365 0.97120 0.95333 1.19946 0.93722 0.96171 1.00716 1.17805 0.86230 0.82730 0.80603 1.90694 1.66210 1.36655 1.47033 1.42410 1.05460 1.26094 1.51635 1.17250 0.81272 1.03305 1.14942 1.24141 0.89695 1.01507 1.05152 1.78260 1.17778 0.98770 1.14360 1.44563 1.02978 1.14260 1.29084 1.19893 0.82671 1.12219 1.30745 0.86562 1.25654 0.99554 0.96066 0.95856 1.70220 1.23436 1.17594 1.28222 0.85804 0.79751 0.79231 0.79323 1.19633 1.20080 1.18777 1.21257 0.85381 1.03599 1.13099 1.21151 0.91448 0.99685 1.00496 1.17208 0.89493 0.89373 0.99466 1.91490 1.77758 1.60052 1.82208 0.90184 0.88070 0.88112 0.74858 0.82848 0.83276 0.76996 0.80594 0.91424 0.83633 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.55 10.39 36.01 0.37 -0.18 16 2 C 0.51 4.05 7.78 -10.98 -0.09 3.96 16 3 O -0.52 -6.36 14.50 5.56 0.08 -6.28 16 4 N -0.67 -4.96 5.20 -9.80 -0.05 -5.01 16 5 C 0.13 1.30 6.31 -83.64 -0.53 0.78 16 6 C -0.10 -1.18 8.67 -39.47 -0.34 -1.52 16 7 C -0.05 -0.66 9.58 -39.21 -0.38 -1.04 16 8 C -0.10 -1.40 5.88 -104.96 -0.62 -2.01 16 9 C 0.54 9.67 7.73 -12.45 -0.10 9.58 16 10 O -0.53 -11.37 13.48 5.27 0.07 -11.30 16 11 N -0.61 -11.00 5.41 -10.93 -0.06 -11.06 16 12 C -0.06 -1.43 6.90 -83.86 -0.58 -2.01 16 13 C -0.03 -0.78 10.85 -17.03 -0.18 -0.96 16 14 N -0.26 -7.61 10.41 30.80 0.32 -7.28 16 15 N -0.14 -3.88 3.74 -11.41 -0.04 -3.93 16 16 C -0.32 -8.53 10.24 -14.81 -0.15 -8.68 16 17 H 0.12 2.74 7.84 -52.48 -0.41 2.32 16 18 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 19 N -0.77 -21.49 11.83 55.50 0.66 -20.83 16 20 Si 0.94 18.90 29.55 -169.99 -5.02 13.87 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 22 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 25 C -0.11 -1.21 9.51 -39.15 -0.37 -1.59 16 26 C 0.07 0.70 7.30 -39.32 -0.29 0.41 16 27 F -0.14 -1.34 16.94 2.25 0.04 -1.30 16 28 H 0.08 0.07 7.92 -51.93 -0.41 -0.35 16 29 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.41 1.79 8.49 -40.82 -0.35 1.44 16 32 H 0.15 1.76 6.18 -52.49 -0.32 1.43 16 33 H 0.15 1.93 7.64 -52.49 -0.40 1.53 16 34 H 0.40 5.45 6.84 -40.82 -0.28 5.17 16 35 H 0.18 4.60 5.91 -52.49 -0.31 4.29 16 36 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.15 2.82 8.06 -52.49 -0.42 2.40 16 38 H 0.14 1.33 6.39 -52.48 -0.34 1.00 16 LS Contribution 340.38 15.07 5.13 5.13 Total: -1.00 -35.82 340.38 -5.63 -41.45 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -3.22 Total: 10.82 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: -3.53 Total: -4.29 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: 0.82 Total: -48.11 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.15 Total: -17.58 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.82 -5.63 -41.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764958302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.775 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds