Wall clock time and date at job start Tue Mar 31 2020 16:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 120.00602 * 2 1 4 4 N 1.34784 * 119.99794 * 179.97438 * 2 1 3 5 5 C 1.39550 * 120.00129 * 184.50788 * 4 2 1 6 6 C 1.39080 * 119.93069 * 325.24452 * 5 4 2 7 7 C 1.37693 * 120.10101 * 180.25586 * 6 5 4 8 8 C 1.39753 * 119.96713 * 359.47449 * 7 6 5 9 9 C 1.47578 * 120.06432 * 180.27626 * 8 7 6 10 10 O 1.21609 * 120.00354 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99845 * 179.97438 * 9 8 7 12 12 C 1.40530 * 120.00249 * 180.02562 * 11 9 8 13 13 C 1.40664 * 126.08362 * 359.68744 * 12 11 9 14 14 N 1.30901 * 108.38617 * 179.81695 * 13 12 11 15 15 N 1.40067 * 108.41193 * 0.44620 * 14 13 12 16 16 C 1.37323 * 126.06505 * 179.67842 * 15 14 13 17 17 H 1.08006 * 119.99382 * 175.01419 * 16 15 14 18 18 C 1.38990 * 120.00280 * 355.01622 * 16 15 14 19 19 N 1.31293 * 119.99835 * 5.03002 * 18 16 15 20 20 Si 1.86797 * 119.99730 * 185.02529 * 18 16 15 21 21 H 1.48505 * 109.46857 * 95.00227 * 20 18 16 22 22 H 1.48501 * 109.47156 * 214.99819 * 20 18 16 23 23 H 1.48491 * 109.47421 * 335.00083 * 20 18 16 24 24 C 1.35697 * 126.08619 * 180.02562 * 12 11 9 25 25 C 1.39753 * 119.86518 * 0.24939 * 8 7 6 26 26 C 1.37870 * 119.89648 * 0.02562 * 25 8 7 27 27 F 1.35105 * 119.98168 * 179.97438 * 26 25 8 28 28 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47066 * 300.00691 * 1 2 3 30 30 H 1.08993 * 109.46784 * 60.00526 * 1 2 3 31 31 H 0.96999 * 119.99726 * 4.50060 * 4 2 1 32 32 H 1.07993 * 119.95099 * 359.97438 * 6 5 4 33 33 H 1.07996 * 120.01650 * 179.75091 * 7 6 5 34 34 H 0.97007 * 120.00193 * 0.02562 * 11 9 8 35 35 H 1.08002 * 125.80432 * 0.02562 * 13 12 11 36 36 H 0.96996 * 119.99980 * 179.97438 * 19 18 16 37 37 H 1.07996 * 126.24902 * 359.96366 * 24 12 11 38 38 H 1.08004 * 120.04925 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 3.5732 -1.1692 0.0955 6 6 4.3110 -0.1539 -0.5038 7 6 5.6852 -0.1552 -0.4167 8 6 6.3393 -1.1721 0.2841 9 6 7.8117 -1.1722 0.3839 10 8 8.4571 -0.2872 -0.1443 11 7 8.4411 -2.1533 1.0606 12 6 9.8432 -2.1532 1.1561 13 6 10.7119 -1.2010 0.5929 14 7 11.9411 -1.5321 0.8979 15 7 11.9070 -2.7093 1.6560 16 6 12.9953 -3.3775 2.1609 17 1 12.8527 -4.2349 2.8021 18 6 14.2802 -2.9504 1.8470 19 7 14.4547 -1.8516 1.1499 20 14 15.7586 -3.9397 2.4170 21 1 16.1832 -4.8635 1.3345 22 1 16.8745 -3.0170 2.7464 23 1 15.3934 -4.7252 3.6231 24 6 10.6003 -3.0752 1.8028 25 6 5.5962 -2.1885 0.8907 26 6 4.2208 -2.1848 0.7952 27 9 3.5008 -3.1668 1.3805 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.6981 -2.0060 -0.0650 32 1 3.8056 0.6342 -1.0421 33 1 6.2570 0.6316 -0.8860 34 1 7.9264 -2.8595 1.4817 35 1 10.4150 -0.3410 0.0109 36 1 15.3514 -1.5533 0.9311 37 1 10.2355 -3.9401 2.3367 38 1 6.0987 -2.9760 1.4327 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764958302.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:47 Heat of formation + Delta-G solvation = -21.408947 kcal Electronic energy + Delta-G solvation = -26493.270280 eV Core-core repulsion = 22251.624925 eV Total energy + Delta-G solvation = -4241.645355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.03855 -41.90929 -41.51440 -40.54667 -38.93044 -36.04766 -36.01169 -35.02350 -32.47171 -32.07073 -31.63836 -30.18566 -29.18007 -26.86414 -25.21586 -24.08309 -22.91630 -22.18651 -21.72440 -21.17415 -19.71285 -19.25807 -18.64258 -18.12548 -17.55084 -17.43996 -17.19592 -16.75960 -16.58801 -16.27339 -16.12217 -15.81928 -15.41756 -15.37305 -15.09860 -14.85280 -14.70753 -14.35135 -13.66865 -13.62656 -13.47433 -13.31919 -13.24454 -13.04093 -12.94933 -12.87083 -12.77607 -12.06346 -11.90765 -11.64512 -11.13790 -11.03840 -10.86287 -10.78292 -10.10585 -10.06418 -9.41463 -8.53721 -8.47094 -6.24169 -0.52620 0.01806 1.20841 1.36814 1.40599 1.58939 1.62162 1.83898 1.92800 1.99867 2.23850 2.36638 2.73820 2.84645 2.96745 3.09057 3.49148 3.67286 3.75528 3.93347 4.08312 4.32176 4.43906 4.47419 4.55571 4.62071 4.66154 4.85769 4.89001 5.00066 5.02253 5.06516 5.16811 5.25051 5.29513 5.41595 5.67209 5.95930 6.24537 6.30067 6.66286 6.73213 6.97861 7.29058 7.46381 7.67257 8.52544 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.037930 B = 0.002064 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.015809 B =13561.804771 C =14217.588968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.507 3.493 3 O -0.568 6.568 4 N -0.660 5.660 5 C 0.139 3.861 6 C -0.107 4.107 7 C -0.054 4.054 8 C -0.119 4.119 9 C 0.543 3.457 10 O -0.570 6.570 11 N -0.606 5.606 12 C -0.048 4.048 13 C -0.057 4.057 14 N -0.311 5.311 15 N -0.167 5.167 16 C -0.353 4.353 17 H 0.143 0.857 18 C -0.008 4.008 19 N -0.825 5.825 20 Si 1.020 2.980 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.242 1.242 24 C -0.076 4.076 25 C -0.093 4.093 26 C 0.070 3.930 27 F -0.126 7.126 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.432 0.568 32 H 0.153 0.847 33 H 0.138 0.862 34 H 0.419 0.581 35 H 0.168 0.832 36 H 0.276 0.724 37 H 0.191 0.809 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.608 -5.520 -0.149 29.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.299 3.701 3 O -0.446 6.446 4 N -0.308 5.308 5 C 0.041 3.959 6 C -0.128 4.128 7 C -0.074 4.074 8 C -0.124 4.124 9 C 0.332 3.668 10 O -0.451 6.451 11 N -0.251 5.251 12 C -0.154 4.154 13 C -0.233 4.233 14 N -0.143 5.143 15 N 0.064 4.936 16 C -0.484 4.484 17 H 0.160 0.840 18 C -0.219 4.219 19 N -0.452 5.452 20 Si 0.839 3.161 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.165 1.165 24 C -0.227 4.227 25 C -0.113 4.113 26 C 0.049 3.951 27 F -0.105 7.105 28 H 0.130 0.870 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.273 0.727 32 H 0.170 0.830 33 H 0.156 0.844 34 H 0.257 0.743 35 H 0.185 0.815 36 H 0.086 0.914 37 H 0.208 0.792 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -26.486 -3.746 -0.671 26.758 hybrid contribution -0.395 -0.954 0.321 1.081 sum -26.881 -4.701 -0.350 27.291 Atomic orbital electron populations 1.21920 0.86137 1.07144 1.06671 1.22037 0.92850 0.81988 0.73250 1.90751 1.71546 1.32845 1.49454 1.43599 1.03385 1.11635 1.72154 1.17972 0.85018 0.95864 0.97018 1.21122 0.92575 0.99219 0.99838 1.21264 0.94036 0.96805 0.95282 1.19492 0.91008 0.98234 1.03620 1.18447 0.87865 0.81553 0.78982 1.90676 1.67646 1.38231 1.48534 1.42287 1.03455 1.27165 1.52184 1.17307 0.83455 1.01652 1.12957 1.24187 0.90287 1.02478 1.06313 1.78155 1.19338 1.00618 1.16153 1.44859 1.04599 1.14281 1.29876 1.20647 0.83109 1.13077 1.31597 0.84006 1.26907 1.02858 0.96842 0.95312 1.70403 1.24227 1.20094 1.30522 0.84565 0.74788 0.77334 0.79437 1.19165 1.20242 1.16457 1.22009 0.84135 1.04390 1.12137 1.21273 0.91804 0.98963 0.99228 1.17059 0.89199 0.89525 0.99357 1.91524 1.77409 1.59576 1.81976 0.87020 0.87428 0.87091 0.72743 0.82989 0.84397 0.74294 0.81523 0.91388 0.79183 0.81515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.50 10.39 71.24 0.74 0.24 16 2 C 0.51 6.88 7.78 87.66 0.68 7.56 16 3 O -0.57 -13.39 14.50 -3.02 -0.04 -13.43 16 4 N -0.66 -7.88 5.20 -303.31 -1.58 -9.46 16 5 C 0.14 2.57 6.31 38.37 0.24 2.81 16 6 C -0.11 -2.41 8.67 22.34 0.19 -2.21 16 7 C -0.05 -1.41 9.58 22.51 0.22 -1.19 16 8 C -0.12 -3.21 5.88 -20.08 -0.12 -3.33 16 9 C 0.54 19.59 7.73 86.71 0.67 20.26 16 10 O -0.57 -25.73 13.48 -4.06 -0.05 -25.78 16 11 N -0.61 -21.14 5.41 -306.73 -1.66 -22.80 16 12 C -0.05 -2.20 6.90 37.75 0.26 -1.94 16 13 C -0.06 -3.18 10.85 85.42 0.93 -2.25 16 14 N -0.31 -18.96 10.41 -56.46 -0.59 -19.55 16 15 N -0.17 -9.32 3.74 -190.00 -0.71 -10.03 16 16 C -0.35 -18.69 10.24 84.01 0.86 -17.83 16 17 H 0.14 6.46 7.84 -2.91 -0.02 6.43 16 18 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 19 N -0.82 -48.00 11.83 21.66 0.26 -47.74 16 20 Si 1.02 38.66 29.55 68.60 2.03 40.69 16 21 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.28 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.24 -8.20 7.11 99.48 0.71 -7.50 16 24 C -0.08 -3.51 11.49 83.38 0.96 -2.55 16 25 C -0.09 -1.86 9.51 22.55 0.21 -1.65 16 26 C 0.07 1.27 7.30 22.44 0.16 1.44 16 27 F -0.13 -1.99 16.94 44.97 0.76 -1.23 16 28 H 0.11 -0.34 7.92 -2.39 -0.02 -0.36 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.43 2.08 8.49 -92.71 -0.79 1.29 16 32 H 0.15 3.50 6.18 -2.91 -0.02 3.48 16 33 H 0.14 3.83 7.64 -2.91 -0.02 3.80 16 34 H 0.42 10.43 6.84 -92.70 -0.63 9.80 16 35 H 0.17 9.35 5.91 -2.91 -0.02 9.34 16 36 H 0.28 14.78 8.31 -92.71 -0.77 14.01 16 37 H 0.19 6.75 8.06 -2.91 -0.02 6.72 16 38 H 0.17 2.48 6.39 -2.91 -0.02 2.46 16 Total: -1.00 -83.44 340.38 4.64 -78.80 By element: Atomic # 1 Polarization: 31.34 SS G_CDS: -0.25 Total: 31.09 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 6.48 Total: -0.56 kcal Atomic # 7 Polarization: -105.30 SS G_CDS: -4.28 Total: -109.58 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -0.10 Total: -39.22 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.76 Total: -1.23 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -83.44 4.64 -78.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764958302.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.391 kcal (2) G-P(sol) polarization free energy of solvation -83.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds