Wall clock time and date at job start Tue Mar 31 2020 16:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00091 * 2 1 4 4 C 1.53006 * 109.46475 * 269.99903 * 3 2 1 5 5 F 1.39898 * 109.47441 * 60.00218 * 4 3 2 6 6 F 1.39905 * 109.46810 * 179.97438 * 4 3 2 7 7 F 1.39899 * 109.47201 * 299.99398 * 4 3 2 8 8 C 1.34778 * 120.00042 * 179.97438 * 2 1 3 9 9 O 1.21584 * 119.99654 * 179.97438 * 8 2 1 10 10 N 1.34769 * 119.99808 * 0.02562 * 8 2 1 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 2 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09008 * 109.47115 * 270.00402 * 1 2 3 28 28 H 1.09004 * 109.47392 * 30.00446 * 1 2 3 29 29 H 1.08993 * 109.47095 * 150.00535 * 1 2 3 30 30 H 1.08999 * 109.47238 * 29.99516 * 3 2 1 31 31 H 1.08990 * 109.47487 * 150.00087 * 3 2 1 32 32 H 0.97001 * 120.00514 * 359.97438 * 10 8 2 33 33 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 34 34 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 35 35 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 36 36 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 39 39 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 9 1.2301 1.8776 -2.1021 6 9 3.1515 2.9222 -1.4427 7 9 3.2086 0.7353 -2.1020 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1671 0.0001 10 7 1.4650 -2.3343 0.0005 11 6 2.1975 -3.6031 0.0005 12 6 1.2182 -4.7485 0.0012 13 6 0.7693 -5.2733 -1.1971 14 6 -0.1277 -6.3233 -1.1999 15 6 -0.5795 -6.8519 0.0024 16 8 -1.4608 -7.8843 0.0029 17 6 -1.7701 -8.4258 -1.1926 18 1 -1.3864 -7.9848 -2.1006 19 6 -2.5809 -9.5488 -1.2561 20 7 -3.0480 -10.0864 -0.1499 21 14 -3.0088 -10.2994 -2.9122 22 1 -1.9910 -11.3194 -3.2714 23 1 -4.3460 -10.9405 -2.8345 24 1 -3.0296 -9.2350 -3.9476 25 6 -0.1317 -6.3186 1.2039 26 6 0.7697 -5.2724 1.2000 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 0.4950 -2.3344 0.0005 33 1 2.8241 -3.6608 0.8905 34 1 2.8241 -3.6609 -0.8895 35 1 1.1213 -4.8621 -2.1316 36 1 -0.4775 -6.7329 -2.1359 37 1 -3.6154 -10.8718 -0.1944 38 1 -0.4846 -6.7246 2.1404 39 1 1.1217 -4.8602 2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800045003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:59 Heat of formation + Delta-G solvation = -176.542011 kcal Electronic energy + Delta-G solvation = -27781.012637 eV Core-core repulsion = 23081.951021 eV Total energy + Delta-G solvation = -4699.061615 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.28775 -47.85781 -47.71565 -40.40458 -39.15212 -37.04636 -35.99187 -34.61318 -32.41903 -30.83042 -30.30467 -29.37851 -26.96516 -25.85876 -24.80380 -23.47967 -22.09140 -20.73297 -20.38285 -19.03870 -18.73369 -18.35657 -18.09524 -17.72725 -17.05816 -16.53465 -15.64854 -15.03272 -14.78750 -14.73488 -14.66994 -14.49247 -14.38908 -14.22698 -13.98508 -13.92526 -13.90456 -13.72892 -13.66542 -13.45020 -13.01075 -12.83441 -12.79635 -12.56518 -12.38020 -12.08739 -11.71472 -11.42944 -10.99699 -10.82544 -10.73266 -10.51097 -10.35455 -9.46759 -9.37358 -8.94467 -8.92599 -8.32473 -7.37377 -6.56129 -4.15004 1.86797 2.09302 2.28674 2.49784 3.04347 3.06514 3.07948 3.12392 3.57520 3.66320 3.82910 3.87956 4.03527 4.47384 4.59948 4.66781 4.88742 4.98096 5.05099 5.12284 5.19071 5.31387 5.40128 5.62830 5.76876 5.77709 5.88179 6.08559 6.31440 6.42388 6.53022 6.56483 6.76739 6.92801 7.11011 7.23786 7.31753 7.66968 7.73336 7.88525 8.36907 8.89236 9.56860 10.61292 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002144 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.627284 B =13055.629618 C =13520.677528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.634 5.634 3 C 0.097 3.903 4 C 0.430 3.570 5 F -0.186 7.186 6 F -0.185 7.185 7 F -0.172 7.172 8 C 0.703 3.297 9 O -0.580 6.580 10 N -0.731 5.731 11 C 0.196 3.804 12 C -0.217 4.217 13 C -0.049 4.049 14 C -0.237 4.237 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.094 0.906 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.272 1.272 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.196 4.196 26 C -0.053 4.053 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.399 0.601 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.272 0.728 38 H 0.118 0.882 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.257 21.796 0.383 22.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.372 5.372 3 C -0.030 4.030 4 C 0.374 3.626 5 F -0.168 7.168 6 F -0.166 7.166 7 F -0.153 7.153 8 C 0.404 3.596 9 O -0.457 6.457 10 N -0.387 5.387 11 C 0.073 3.927 12 C -0.218 4.218 13 C -0.068 4.068 14 C -0.257 4.257 15 C 0.106 3.894 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.165 4.165 20 N -0.493 5.493 21 Si 0.767 3.233 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.191 1.191 25 C -0.215 4.215 26 C -0.072 4.072 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.235 0.765 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.865 21.400 0.608 22.482 hybrid contribution -0.777 -0.285 -1.210 1.466 sum 6.088 21.115 -0.602 21.983 Atomic orbital electron populations 1.21932 0.78331 1.04112 1.02606 1.46844 1.07014 1.03857 1.79501 1.22387 1.02713 0.87621 0.90304 1.21456 0.74195 0.75083 0.91885 1.93165 1.44412 1.95393 1.83808 1.93183 1.79776 1.46635 1.97035 1.93257 1.76364 1.62387 1.83284 1.15943 0.85366 0.80373 0.77875 1.90944 1.11270 1.86029 1.57462 1.45667 1.10276 1.04337 1.78379 1.19891 0.92162 0.78667 1.01944 1.19197 1.06618 1.02285 0.93716 1.20656 0.94981 0.94692 0.96474 1.21163 1.04487 1.01501 0.98504 1.19448 0.88213 0.88417 0.93318 1.83977 1.50451 1.39870 1.33193 1.21362 1.31621 1.10946 0.83050 0.88891 1.25326 0.96094 0.95615 0.99420 1.70032 1.31146 1.21008 1.27100 0.85690 0.78317 0.79369 0.79953 1.19762 1.20177 1.19122 1.20213 1.03651 1.01345 0.96305 1.20533 0.95277 0.94787 0.96565 0.91657 0.90183 0.90511 0.86008 0.85266 0.76474 0.91486 0.91540 0.87370 0.85405 0.91842 0.86360 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.00 59.85 0.60 1.05 16 2 N -0.63 -5.82 2.79 -187.35 -0.52 -6.35 16 3 C 0.10 0.72 5.44 -4.04 -0.02 0.70 16 4 C 0.43 4.09 3.29 37.16 0.12 4.21 16 5 F -0.19 -1.79 16.23 2.25 0.04 -1.75 16 6 F -0.18 -1.71 17.32 2.25 0.04 -1.67 16 7 F -0.17 -2.22 16.24 2.25 0.04 -2.18 16 8 C 0.70 8.97 7.88 -86.92 -0.68 8.29 16 9 O -0.58 -9.37 15.32 5.29 0.08 -9.29 16 10 N -0.73 -8.82 5.41 -66.42 -0.36 -9.18 16 11 C 0.20 2.66 5.80 -5.19 -0.03 2.63 16 12 C -0.22 -3.34 5.25 -104.58 -0.55 -3.89 16 13 C -0.05 -0.83 9.69 -39.61 -0.38 -1.21 16 14 C -0.24 -4.80 9.17 -39.39 -0.36 -5.16 16 15 C 0.16 3.65 6.65 -39.11 -0.26 3.39 16 16 O -0.17 -4.70 9.76 0.05 0.00 -4.70 16 17 C -0.39 -10.56 9.49 30.89 0.29 -10.26 16 18 H 0.09 2.30 5.20 -52.49 -0.27 2.02 16 19 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -24.37 13.67 55.48 0.76 -23.61 16 21 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 25 C -0.20 -3.82 9.99 -39.39 -0.39 -4.21 16 26 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 27 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 28 H 0.08 0.40 7.25 -51.93 -0.38 0.02 16 29 H 0.08 0.50 6.36 -51.93 -0.33 0.17 16 30 H 0.12 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.13 1.02 7.42 -51.93 -0.39 0.63 16 32 H 0.40 4.21 6.19 -40.82 -0.25 3.95 16 33 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.13 2.61 5.64 -52.49 -0.30 2.32 16 37 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 38 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 348.37 15.07 5.25 5.25 Total: -1.00 -32.19 348.37 -5.85 -38.04 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.00 Total: 5.39 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.15 Total: -4.73 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: -0.12 Total: -39.14 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.08 Total: -13.99 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.11 Total: -5.60 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.19 -5.85 -38.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800045003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.503 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds