Wall clock time and date at job start Tue Mar 31 2020 16:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46501 * 120.00091 * 2 1 4 4 C 1.53006 * 109.46475 * 269.99903 * 3 2 1 5 5 F 1.39898 * 109.47441 * 60.00218 * 4 3 2 6 6 F 1.39905 * 109.46810 * 179.97438 * 4 3 2 7 7 F 1.39899 * 109.47201 * 299.99398 * 4 3 2 8 8 C 1.34778 * 120.00042 * 179.97438 * 2 1 3 9 9 O 1.21584 * 119.99654 * 179.97438 * 8 2 1 10 10 N 1.34769 * 119.99808 * 0.02562 * 8 2 1 11 11 C 1.46508 * 120.00011 * 179.97438 * 10 8 2 12 12 C 1.50695 * 109.47103 * 179.97438 * 11 10 8 13 13 C 1.38299 * 119.93247 * 90.00118 * 12 11 10 14 14 C 1.38101 * 120.07425 * 179.97438 * 13 12 11 15 15 C 1.38886 * 119.92536 * 0.02562 * 14 13 12 16 16 O 1.35750 * 120.06440 * 180.02562 * 15 14 13 17 17 C 1.34828 * 117.00075 * 5.53777 * 16 15 14 18 18 H 1.07993 * 120.00518 * 354.94289 * 17 16 15 19 19 C 1.38663 * 119.99751 * 174.94575 * 17 16 15 20 20 N 1.31556 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99821 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47448 * 89.99502 * 21 19 17 23 23 H 1.48501 * 109.47175 * 209.99712 * 21 19 17 24 24 H 1.48506 * 109.47415 * 329.99678 * 21 19 17 25 25 C 1.38874 * 119.86623 * 0.27854 * 15 14 13 26 26 C 1.38106 * 119.92542 * 359.44577 * 25 15 14 27 27 H 1.09008 * 109.47115 * 270.00402 * 1 2 3 28 28 H 1.09004 * 109.47392 * 30.00446 * 1 2 3 29 29 H 1.08993 * 109.47095 * 150.00535 * 1 2 3 30 30 H 1.08999 * 109.47238 * 29.99516 * 3 2 1 31 31 H 1.08990 * 109.47487 * 150.00087 * 3 2 1 32 32 H 0.97001 * 120.00514 * 359.97438 * 10 8 2 33 33 H 1.08998 * 109.46632 * 59.99915 * 11 10 8 34 34 H 1.08996 * 109.47144 * 299.99646 * 11 10 8 35 35 H 1.07999 * 119.96503 * 0.02562 * 13 12 11 36 36 H 1.07992 * 120.03608 * 180.02562 * 14 13 12 37 37 H 0.96996 * 120.00178 * 179.97438 * 20 19 17 38 38 H 1.07996 * 120.03745 * 179.72497 * 25 15 14 39 39 H 1.07997 * 119.96326 * 180.27708 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 9 1.2301 1.8776 -2.1021 6 9 3.1515 2.9222 -1.4427 7 9 3.2086 0.7353 -2.1020 8 6 2.1389 -1.1672 0.0005 9 8 3.3547 -1.1671 0.0001 10 7 1.4650 -2.3343 0.0005 11 6 2.1975 -3.6031 0.0005 12 6 1.2182 -4.7485 0.0012 13 6 0.7693 -5.2733 -1.1971 14 6 -0.1277 -6.3233 -1.1999 15 6 -0.5795 -6.8519 0.0024 16 8 -1.4608 -7.8843 0.0029 17 6 -1.7701 -8.4258 -1.1926 18 1 -1.3864 -7.9848 -2.1006 19 6 -2.5809 -9.5488 -1.2561 20 7 -3.0480 -10.0864 -0.1499 21 14 -3.0088 -10.2994 -2.9122 22 1 -1.9910 -11.3194 -3.2714 23 1 -4.3460 -10.9405 -2.8345 24 1 -3.0296 -9.2350 -3.9476 25 6 -0.1317 -6.3186 1.2039 26 6 0.7697 -5.2724 1.2000 27 1 -0.3634 0.0001 1.0277 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5137 30 1 1.6084 2.0284 0.5137 31 1 3.1499 1.1384 0.5138 32 1 0.4950 -2.3344 0.0005 33 1 2.8241 -3.6608 0.8905 34 1 2.8241 -3.6609 -0.8895 35 1 1.1213 -4.8621 -2.1316 36 1 -0.4775 -6.7329 -2.1359 37 1 -3.6154 -10.8718 -0.1944 38 1 -0.4846 -6.7246 2.1404 39 1 1.1217 -4.8602 2.1341 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800045003.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:58 Heat of formation + Delta-G solvation = -197.325949 kcal Electronic energy + Delta-G solvation = -27781.913896 eV Core-core repulsion = 23081.951021 eV Total energy + Delta-G solvation = -4699.962875 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -51.05468 -48.58926 -48.55279 -41.37335 -40.73442 -38.58405 -36.85825 -35.78268 -34.28304 -31.93594 -31.76864 -30.40518 -27.85093 -27.40034 -26.13516 -24.31145 -23.64002 -22.19089 -21.29006 -19.94723 -19.79338 -19.49921 -19.19376 -18.77633 -18.46083 -17.43175 -16.70489 -16.39786 -16.26070 -15.99464 -15.66947 -15.49797 -15.48972 -15.27072 -15.09248 -14.99621 -14.88424 -14.73402 -14.70579 -14.49368 -14.36075 -14.04164 -13.65747 -13.55419 -13.30560 -13.19741 -13.03824 -12.94838 -12.53968 -12.35860 -12.23696 -12.10703 -11.41643 -11.20220 -10.80759 -10.28988 -9.82406 -9.76882 -9.01888 -8.48362 -6.16352 0.51329 0.58428 1.36223 1.38667 1.46579 1.52874 1.72186 2.14718 2.17098 2.70444 2.88936 2.95507 3.08102 3.20343 3.32476 3.49701 3.86637 4.03907 4.05376 4.16305 4.18190 4.33971 4.46938 4.57356 4.63768 4.73185 4.81738 4.88723 5.04766 5.14744 5.17796 5.27146 5.42484 5.52286 5.68979 5.71416 5.75955 6.01680 6.16456 6.82067 6.96704 7.42444 7.75849 8.74374 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002144 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.627284 B =13055.629618 C =13520.677528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.630 5.630 3 C 0.098 3.902 4 C 0.427 3.573 5 F -0.187 7.187 6 F -0.184 7.184 7 F -0.196 7.196 8 C 0.700 3.300 9 O -0.617 6.617 10 N -0.726 5.726 11 C 0.202 3.798 12 C -0.182 4.182 13 C -0.045 4.045 14 C -0.244 4.244 15 C 0.123 3.877 16 O -0.228 6.228 17 C -0.413 4.413 18 H 0.103 0.897 19 C -0.021 4.021 20 N -0.918 5.918 21 Si 1.017 2.983 22 H -0.265 1.265 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.204 4.204 26 C -0.040 4.040 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.166 0.834 31 H 0.125 0.875 32 H 0.408 0.592 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.273 0.727 38 H 0.116 0.884 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.097 24.550 -0.015 25.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.366 5.366 3 C -0.028 4.028 4 C 0.371 3.629 5 F -0.168 7.168 6 F -0.166 7.166 7 F -0.177 7.177 8 C 0.401 3.599 9 O -0.497 6.497 10 N -0.383 5.383 11 C 0.079 3.921 12 C -0.184 4.184 13 C -0.064 4.064 14 C -0.263 4.263 15 C 0.072 3.928 16 O -0.134 6.134 17 C -0.489 4.489 18 H 0.120 0.880 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.190 1.190 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.223 4.223 26 C -0.059 4.059 27 H 0.103 0.897 28 H 0.114 0.886 29 H 0.092 0.908 30 H 0.184 0.816 31 H 0.143 0.857 32 H 0.246 0.754 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 7.708 24.235 0.210 25.432 hybrid contribution -0.794 -0.758 -1.004 1.488 sum 6.914 23.477 -0.794 24.487 Atomic orbital electron populations 1.22164 0.76327 1.04813 1.04131 1.46882 1.08220 1.03292 1.78256 1.22645 1.03399 0.87829 0.88944 1.21812 0.73801 0.74667 0.92610 1.93162 1.44276 1.95361 1.84017 1.93183 1.79816 1.46505 1.97054 1.93210 1.77093 1.63458 1.83972 1.16066 0.84969 0.81206 0.77611 1.90926 1.13002 1.86706 1.59092 1.45402 1.10623 1.03802 1.78486 1.19753 0.91469 0.78423 1.02457 1.19471 1.04526 1.01438 0.92929 1.20927 0.93700 0.93398 0.98371 1.21231 1.05249 1.02439 0.97382 1.20006 0.88992 0.88405 0.95386 1.83947 1.53474 1.42418 1.33580 1.21819 1.31958 1.11504 0.83631 0.87951 1.26560 0.95861 0.95901 1.03584 1.70171 1.33366 1.22289 1.29774 0.84606 0.78113 0.78621 0.75038 1.19004 1.19655 1.17579 1.20455 1.04288 1.02171 0.95371 1.20882 0.93427 0.93081 0.98469 0.89690 0.88569 0.90822 0.81635 0.85715 0.75409 0.90699 0.91603 0.84618 0.86297 0.91796 0.86565 0.83295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 10.00 127.77 1.28 1.86 16 2 N -0.63 -9.52 2.79 -864.92 -2.41 -11.93 16 3 C 0.10 1.16 5.44 86.38 0.47 1.63 16 4 C 0.43 7.20 3.29 71.98 0.24 7.44 16 5 F -0.19 -3.12 16.23 44.97 0.73 -2.39 16 6 F -0.18 -3.05 17.32 44.97 0.78 -2.27 16 7 F -0.20 -4.83 16.24 44.97 0.73 -4.10 16 8 C 0.70 15.89 7.88 179.06 1.41 17.30 16 9 O -0.62 -18.68 15.32 -3.98 -0.06 -18.74 16 10 N -0.73 -15.08 5.41 -482.31 -2.61 -17.69 16 11 C 0.20 4.77 5.80 85.63 0.50 5.26 16 12 C -0.18 -5.04 5.25 -19.84 -0.10 -5.15 16 13 C -0.05 -1.42 9.69 22.25 0.22 -1.21 16 14 C -0.24 -9.84 9.17 22.39 0.21 -9.63 16 15 C 0.12 5.73 6.65 22.58 0.15 5.88 16 16 O -0.23 -13.15 9.76 -22.72 -0.22 -13.37 16 17 C -0.41 -23.20 9.49 67.92 0.64 -22.55 16 18 H 0.10 5.25 5.20 -2.91 -0.02 5.24 16 19 C -0.02 -1.17 5.49 84.84 0.47 -0.70 16 20 N -0.92 -54.96 13.67 21.62 0.30 -54.66 16 21 Si 1.02 41.65 29.55 68.60 2.03 43.68 16 22 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 24 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 25 C -0.20 -7.89 9.99 22.39 0.22 -7.67 16 26 C -0.04 -1.18 9.69 22.25 0.22 -0.97 16 27 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.10 0.56 7.25 -2.38 -0.02 0.55 16 29 H 0.07 0.70 6.36 -2.39 -0.02 0.69 16 30 H 0.17 0.48 8.07 -2.39 -0.02 0.46 16 31 H 0.12 1.67 7.42 -2.39 -0.02 1.65 16 32 H 0.41 7.11 6.19 -92.71 -0.57 6.53 16 33 H 0.07 1.74 8.08 -2.39 -0.02 1.72 16 34 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 36 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 37 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -74.89 348.37 5.71 -69.18 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.55 Total: 20.78 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.91 Total: -8.49 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -4.73 Total: -84.28 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.28 Total: -32.11 kcal Atomic # 9 Polarization: -11.00 SS G_CDS: 2.24 Total: -8.76 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -74.89 5.71 -69.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800045003.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.142 kcal (2) G-P(sol) polarization free energy of solvation -74.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds