Wall clock time and date at job start Tue Mar 31 2020 16:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46494 * 120.00322 * 2 1 4 4 C 1.50705 * 109.47068 * 270.00449 * 3 2 1 5 5 N 1.30518 * 126.34087 * 269.69031 * 4 3 2 6 6 N 1.28603 * 109.66912 * 180.26048 * 5 4 3 7 7 C 1.30514 * 109.67457 * 359.97438 * 6 5 4 8 8 N 1.35485 * 126.34936 * 89.99632 * 4 3 2 9 9 C 1.46504 * 126.98154 * 359.74257 * 8 4 3 10 10 C 1.34779 * 119.99254 * 180.02562 * 2 1 3 11 11 O 1.21613 * 119.99252 * 175.63589 * 10 2 1 12 12 C 1.47423 * 120.00470 * 355.63530 * 10 2 1 13 13 C 1.39678 * 120.21305 * 48.56789 * 12 10 2 14 14 C 1.37814 * 119.93517 * 180.02562 * 13 12 10 15 15 C 1.38656 * 120.38120 * 0.02562 * 14 13 12 16 16 C 1.37909 * 120.44254 * 359.97438 * 15 14 13 17 17 C 1.39124 * 120.04637 * 359.72009 * 16 15 14 18 18 S 1.76203 * 120.18882 * 180.27637 * 17 16 15 19 19 C 1.76199 * 100.00024 * 351.90375 * 18 17 16 20 20 H 1.07997 * 120.00255 * 4.15290 * 19 18 17 21 21 C 1.38805 * 120.00132 * 184.15384 * 19 18 17 22 22 N 1.31557 * 119.99449 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00239 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46909 * 90.00160 * 23 21 19 25 25 H 1.48496 * 109.47203 * 210.00113 * 23 21 19 26 26 H 1.48499 * 109.47062 * 330.00049 * 23 21 19 27 27 H 1.08996 * 109.47617 * 95.11569 * 1 2 3 28 28 H 1.09002 * 109.47148 * 215.12442 * 1 2 3 29 29 H 1.09004 * 109.46702 * 335.11577 * 1 2 3 30 30 H 1.08997 * 109.47472 * 150.00422 * 3 2 1 31 31 H 1.09003 * 109.47261 * 29.99717 * 3 2 1 32 32 H 1.07999 * 126.35037 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47093 * 89.99470 * 9 8 4 34 34 H 1.08996 * 109.47427 * 209.99877 * 9 8 4 35 35 H 1.09005 * 109.46960 * 329.99803 * 9 8 4 36 36 H 1.07998 * 120.03404 * 359.97438 * 13 12 10 37 37 H 1.07999 * 119.80794 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.78002 * 179.97438 * 15 14 13 39 39 H 1.08003 * 119.97951 * 180.02562 * 16 15 14 40 40 H 0.96999 * 119.99326 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7037 -1.4209 5 7 3.4907 1.4059 -2.1483 6 7 3.3781 1.9490 -3.3086 7 6 2.2590 2.6173 -3.3742 8 7 1.6375 2.4811 -2.1779 9 6 0.3495 3.0573 -1.7834 10 6 2.1388 -1.1673 -0.0005 11 8 3.3523 -1.1688 -0.0807 12 6 1.4048 -2.4422 0.0961 13 6 0.3045 -2.6841 -0.7297 14 6 -0.3777 -3.8777 -0.6342 15 6 0.0211 -4.8423 0.2785 16 6 1.1052 -4.6199 1.1014 17 6 1.8109 -3.4240 1.0158 18 16 3.2011 -3.1389 2.0603 19 6 3.0758 -4.5374 3.1249 20 1 2.3176 -5.2855 2.9468 21 6 3.9518 -4.6776 4.1925 22 7 4.8751 -3.7661 4.4097 23 14 3.8186 -6.1599 5.3215 24 1 4.6713 -7.2579 4.7995 25 1 4.2727 -5.7859 6.6850 26 1 2.4059 -6.6141 5.3775 27 1 -0.3634 -0.0916 -1.0235 28 1 -0.3633 -0.8405 0.5913 29 1 -0.3633 0.9323 0.4325 30 1 3.1500 1.1383 0.5137 31 1 1.6085 2.0284 0.5138 32 1 1.8957 3.1756 -4.2243 33 1 0.5116 4.0395 -1.3394 34 1 -0.2885 3.1562 -2.6615 35 1 -0.1327 2.4047 -1.0555 36 1 -0.0117 -1.9362 -1.4417 37 1 -1.2280 -4.0627 -1.2739 38 1 -0.5209 -5.7741 0.3454 39 1 1.4096 -5.3767 1.8093 40 1 5.4875 -3.8643 5.1556 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000807719972.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:26 Heat of formation + Delta-G solvation = 66.589821 kcal Electronic energy + Delta-G solvation = -25697.590746 eV Core-core repulsion = 22025.974481 eV Total energy + Delta-G solvation = -3671.616266 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.07802 -41.18580 -39.05784 -36.92754 -35.80504 -34.78802 -33.07846 -31.88943 -31.58923 -28.93407 -28.05271 -27.88316 -27.36417 -24.30857 -23.50973 -23.26460 -22.14622 -20.87485 -19.67663 -18.37594 -18.11403 -17.76418 -17.61753 -17.08252 -16.82969 -16.64215 -16.08591 -15.82803 -15.67879 -15.11790 -14.68041 -14.59826 -14.50579 -14.22820 -13.92110 -13.73655 -13.64071 -13.35363 -13.18146 -13.03599 -12.92726 -12.85696 -12.59138 -12.45472 -12.05072 -11.49509 -11.41078 -11.26066 -11.15753 -11.02255 -10.47560 -10.42226 -10.23722 -9.86426 -9.76559 -8.52568 -8.47343 -6.27893 0.13219 0.50552 0.77003 1.25991 1.37600 1.45818 1.58270 1.59873 1.75550 1.84496 2.17434 2.26325 2.82158 2.95589 3.18728 3.29918 3.58643 3.76315 3.90690 3.95507 4.03415 4.22971 4.26320 4.41930 4.44896 4.57523 4.57926 4.65537 4.69635 4.70641 4.82380 4.88367 4.94698 5.08578 5.18110 5.35175 5.44303 5.48038 5.54523 5.65614 6.01310 6.07534 6.14495 6.27484 6.93496 7.19596 7.79192 8.59670 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.016895 B = 0.003458 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1656.876954 B = 8095.139410 C = 9070.267482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.607 5.607 3 C 0.205 3.795 4 C 0.158 3.842 5 N -0.336 5.336 6 N -0.361 5.361 7 C 0.166 3.834 8 N -0.464 5.464 9 C 0.057 3.943 10 C 0.557 3.443 11 O -0.549 6.549 12 C -0.164 4.164 13 C -0.062 4.062 14 C -0.149 4.149 15 C -0.073 4.073 16 C -0.169 4.169 17 C -0.066 4.066 18 S -0.002 6.002 19 C -0.578 4.578 20 H 0.100 0.900 21 C 0.022 3.978 22 N -0.906 5.906 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.273 1.273 26 H -0.254 1.254 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.081 0.919 31 H 0.149 0.851 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.150 0.850 37 H 0.166 0.834 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.639 13.470 -11.147 27.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.341 5.341 3 C 0.080 3.920 4 C -0.113 4.113 5 N -0.176 5.176 6 N -0.200 5.200 7 C -0.123 4.123 8 N -0.154 5.154 9 C -0.083 4.083 10 C 0.346 3.654 11 O -0.426 6.426 12 C -0.177 4.177 13 C -0.082 4.082 14 C -0.171 4.171 15 C -0.094 4.094 16 C -0.194 4.194 17 C -0.183 4.183 18 S 0.254 5.746 19 C -0.725 4.725 20 H 0.118 0.882 21 C -0.184 4.184 22 N -0.541 5.541 23 Si 0.819 3.181 24 H -0.193 1.193 25 H -0.197 1.197 26 H -0.178 1.178 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.131 0.869 30 H 0.099 0.901 31 H 0.167 0.833 32 H 0.282 0.718 33 H 0.122 0.878 34 H 0.141 0.859 35 H 0.121 0.879 36 H 0.168 0.832 37 H 0.184 0.816 38 H 0.169 0.831 39 H 0.138 0.862 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.495 13.879 -11.251 25.715 hybrid contribution -1.060 -1.258 1.053 1.953 sum -19.554 12.622 -10.197 25.410 Atomic orbital electron populations 1.22357 0.76352 1.05554 1.03075 1.47747 1.08584 1.03757 1.74043 1.19760 0.99955 0.86086 0.86234 1.25435 0.89937 0.97206 0.98707 1.74345 1.22570 1.20761 0.99896 1.74194 1.19214 1.13087 1.13516 1.27312 0.91433 1.01982 0.91532 1.46481 1.19956 1.37641 1.11361 1.22676 0.79782 1.00747 1.05096 1.18651 0.86736 0.84826 0.75189 1.90854 1.15758 1.87429 1.48545 1.19394 1.00767 0.94265 1.03264 1.21387 0.91773 0.98623 0.96367 1.21308 1.02141 0.93110 1.00562 1.21514 0.94293 1.00090 0.93479 1.21450 0.98593 0.96582 1.02771 1.22742 0.99513 0.96770 0.99305 1.84354 1.27688 1.33042 1.29484 1.23853 1.22401 1.10552 1.15649 0.88231 1.26198 0.93370 1.00504 0.98296 1.70141 1.17961 1.35700 1.30254 0.84955 0.79596 0.76813 0.76716 1.19321 1.19739 1.17760 0.90797 0.90862 0.86907 0.90091 0.83344 0.71806 0.87810 0.85872 0.87946 0.83209 0.81625 0.83076 0.86163 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 8.27 127.77 1.06 2.10 16 2 N -0.61 -16.93 2.86 -855.02 -2.44 -19.37 16 3 C 0.21 5.21 5.58 85.64 0.48 5.69 16 4 C 0.16 4.30 7.61 137.98 1.05 5.35 16 5 N -0.34 -12.84 12.21 -50.16 -0.61 -13.45 16 6 N -0.36 -11.89 12.21 -59.99 -0.73 -12.62 16 7 C 0.17 3.13 12.74 180.11 2.30 5.43 16 8 N -0.46 -7.45 3.15 -542.07 -1.71 -9.16 16 9 C 0.06 0.14 10.89 127.77 1.39 1.53 16 10 C 0.56 22.80 6.72 86.66 0.58 23.38 16 11 O -0.55 -28.79 15.30 -4.07 -0.06 -28.85 16 12 C -0.16 -6.48 4.92 -19.95 -0.10 -6.57 16 13 C -0.06 -1.73 7.77 22.52 0.18 -1.56 16 14 C -0.15 -3.63 10.02 22.27 0.22 -3.40 16 15 C -0.07 -2.17 10.02 22.29 0.22 -1.95 16 16 C -0.17 -6.95 9.24 22.40 0.21 -6.74 16 17 C -0.07 -3.12 6.13 23.04 0.14 -2.98 16 18 S 0.00 -0.10 19.68 -56.49 -1.11 -1.22 16 19 C -0.58 -33.58 9.08 67.96 0.62 -32.96 16 20 H 0.10 5.41 4.86 -2.91 -0.01 5.39 16 21 C 0.02 1.25 5.49 84.87 0.47 1.72 16 22 N -0.91 -55.53 13.22 21.65 0.29 -55.25 16 23 Si 1.00 43.63 29.55 68.60 2.03 45.65 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.25 -10.35 7.11 99.48 0.71 -9.65 16 27 H 0.07 0.82 7.04 -2.39 -0.02 0.80 16 28 H 0.07 1.38 6.28 -2.39 -0.01 1.36 16 29 H 0.11 0.73 7.04 -2.38 -0.02 0.71 16 30 H 0.08 2.75 7.49 -2.39 -0.02 2.73 16 31 H 0.15 1.99 7.58 -2.39 -0.02 1.98 16 32 H 0.27 1.75 8.06 -2.91 -0.02 1.72 16 33 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.12 -0.37 8.14 -2.39 -0.02 -0.39 16 35 H 0.10 0.04 6.09 -2.38 -0.01 0.03 16 36 H 0.15 3.11 6.26 -2.91 -0.02 3.09 16 37 H 0.17 2.48 8.06 -2.91 -0.02 2.46 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.12 5.33 4.99 -2.91 -0.01 5.31 16 40 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -98.56 350.40 5.55 -93.01 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.10 Total: 12.21 kcal Atomic # 6 Polarization: -19.77 SS G_CDS: 8.81 Total: -10.96 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -5.21 Total: -109.85 kcal Atomic # 8 Polarization: -28.79 SS G_CDS: -0.06 Total: -28.85 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: -0.10 SS G_CDS: -1.11 Total: -1.22 kcal Total: -98.56 5.55 -93.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000807719972.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.605 kcal (2) G-P(sol) polarization free energy of solvation -98.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds