Wall clock time and date at job start Tue Mar 31 2020 16:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42905 * 113.99713 * 2 1 4 4 H 1.08996 * 109.47099 * 30.00186 * 3 2 1 5 5 C 1.53004 * 109.46823 * 150.00018 * 3 2 1 6 6 N 1.46501 * 109.47134 * 299.99805 * 5 3 2 7 7 C 1.34779 * 120.00176 * 179.97438 * 6 5 3 8 8 O 1.21585 * 119.99635 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99966 * 179.72533 * 7 6 5 10 10 C 1.39955 * 119.99631 * 175.12250 * 9 7 6 11 11 C 1.39290 * 119.94329 * 145.77379 * 10 9 7 12 12 C 1.38486 * 120.43061 * 180.02562 * 11 10 9 13 13 C 1.37688 * 120.31929 * 359.97438 * 12 11 10 14 14 C 1.40740 * 119.88500 * 359.97438 * 13 12 11 15 15 C 1.41400 * 120.21190 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00434 * 205.17708 * 15 14 13 17 17 C 1.39931 * 120.00024 * 25.18214 * 15 14 13 18 18 N 1.30828 * 119.99910 * 16.77337 * 17 15 14 19 19 Si 1.86803 * 120.00059 * 196.78099 * 17 15 14 20 20 H 1.48504 * 109.47145 * 59.99939 * 19 17 15 21 21 H 1.48501 * 109.46754 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47023 * 299.99600 * 19 17 15 23 23 C 1.38229 * 119.94965 * 325.50010 * 10 9 7 24 24 C 1.52997 * 109.47251 * 269.99519 * 3 2 1 25 25 F 1.39898 * 109.47199 * 300.00598 * 24 3 2 26 26 F 1.39898 * 109.46843 * 60.00255 * 24 3 2 27 27 F 1.39893 * 109.47191 * 180.02562 * 24 3 2 28 28 H 1.09006 * 109.46642 * 60.00106 * 1 2 3 29 29 H 1.08994 * 109.46914 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47283 * 300.00028 * 1 2 3 31 31 H 1.08998 * 109.47223 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47520 * 59.99637 * 5 3 2 33 33 H 0.97006 * 119.99916 * 0.02562 * 6 5 3 34 34 H 0.96995 * 119.99938 * 355.12636 * 9 7 6 35 35 H 1.08001 * 119.78694 * 359.97380 * 11 10 9 36 36 H 1.08004 * 119.84082 * 180.02562 * 12 11 10 37 37 H 1.07995 * 120.05866 * 179.97438 * 13 12 11 38 38 H 0.97009 * 120.00053 * 180.02562 * 18 17 15 39 39 H 1.08001 * 120.16049 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7213 6 7 3.1603 0.8172 2.1025 7 6 4.2162 0.7030 2.9323 8 8 5.3335 0.9707 2.5346 9 7 4.0327 0.2979 4.2046 10 6 5.1374 0.0810 5.0361 11 6 5.0493 0.3637 6.3971 12 6 6.1363 0.1534 7.2290 13 6 7.3170 -0.3384 6.7190 14 6 7.4204 -0.6296 5.3460 15 6 8.6297 -1.1344 4.8148 16 1 8.8667 -0.9825 3.7722 17 6 9.5195 -1.8310 5.6401 18 7 9.1123 -2.3018 6.7908 19 14 11.2888 -2.0884 5.0990 20 1 11.9422 -0.7699 4.8991 21 1 12.0201 -2.8495 6.1436 22 1 11.3107 -2.8501 3.8244 23 6 6.3123 -0.4187 4.5063 24 6 2.2177 1.7714 -1.4425 25 9 3.0716 0.8808 -2.1019 26 9 0.9846 1.8100 -2.1020 27 9 2.7872 3.0492 -1.4424 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8020 2.2592 0.7217 32 1 4.0242 0.5694 0.2075 33 1 2.2688 0.6033 2.4197 34 1 3.1351 0.1566 4.5439 35 1 4.1275 0.7501 6.8063 36 1 6.0574 0.3754 8.2830 37 1 8.1621 -0.5004 7.3715 38 1 9.7293 -2.7844 7.3632 39 1 6.3800 -0.6427 3.4519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000836765450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:39:49 Heat of formation + Delta-G solvation = -200.727337 kcal Electronic energy + Delta-G solvation = -28089.454940 eV Core-core repulsion = 23389.344570 eV Total energy + Delta-G solvation = -4700.110370 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.48722 -48.04711 -47.90738 -40.07687 -38.89057 -37.31076 -34.92191 -34.31747 -33.02084 -31.26566 -29.77319 -28.07353 -27.06015 -25.80843 -25.21670 -22.65732 -21.66400 -20.83724 -20.16291 -19.08005 -18.89158 -18.61210 -17.82382 -17.62659 -17.00413 -16.05183 -15.48793 -15.34079 -15.13145 -14.85648 -14.76737 -14.73839 -14.59946 -14.37855 -14.36458 -14.09179 -14.06111 -13.94727 -13.37007 -12.94589 -12.84949 -12.60258 -12.29413 -12.09942 -11.87933 -11.60792 -11.17571 -11.06708 -10.87684 -10.49866 -10.45271 -10.19826 -9.70254 -9.48971 -9.13186 -9.01813 -8.98107 -7.40092 -6.86172 -6.66275 -4.28898 2.09897 2.65924 2.78533 2.88123 2.99884 3.12089 3.16373 3.26942 3.32250 3.54866 3.69663 3.82676 4.00585 4.24920 4.29186 4.55219 4.69841 4.75114 4.83906 5.16965 5.24190 5.46162 5.76428 6.20586 6.26645 6.36272 6.43523 6.74350 6.80630 7.08527 7.13569 7.27670 7.36197 7.71520 7.84733 8.03222 8.15385 8.27887 8.42885 8.70789 8.91705 9.01150 9.05518 10.26286 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.002526 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.343954 B =11082.459279 C =12018.540866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.350 6.350 3 C 0.038 3.962 4 H 0.114 0.886 5 C 0.143 3.857 6 N -0.744 5.744 7 C 0.701 3.299 8 O -0.562 6.562 9 N -0.679 5.679 10 C 0.168 3.832 11 C -0.263 4.263 12 C -0.092 4.092 13 C -0.174 4.174 14 C 0.121 3.879 15 C -0.458 4.458 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.909 3.091 20 H -0.264 1.264 21 H -0.279 1.279 22 H -0.265 1.265 23 C -0.209 4.209 24 C 0.436 3.564 25 F -0.169 7.169 26 F -0.182 7.182 27 F -0.176 7.176 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.053 0.947 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.395 0.605 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 5.841 -11.149 22.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.268 6.268 3 C -0.023 4.023 4 H 0.132 0.868 5 C 0.018 3.982 6 N -0.402 5.402 7 C 0.402 3.598 8 O -0.437 6.437 9 N -0.325 5.325 10 C 0.076 3.924 11 C -0.285 4.285 12 C -0.111 4.111 13 C -0.193 4.193 14 C 0.118 3.882 15 C -0.488 4.488 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.422 5.422 19 Si 0.733 3.267 20 H -0.188 1.188 21 H -0.204 1.204 22 H -0.190 1.190 23 C -0.231 4.231 24 C 0.381 3.619 25 F -0.151 7.151 26 F -0.164 7.164 27 F -0.157 7.157 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.071 0.929 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.229 0.771 34 H 0.228 0.772 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.893 5.765 -11.392 21.175 hybrid contribution -0.461 -0.087 -0.205 0.512 sum -17.354 5.678 -11.597 21.631 Atomic orbital electron populations 1.23204 0.79440 1.04426 1.01234 1.88183 1.21176 1.23398 1.93997 1.23581 0.99641 0.89106 0.89966 0.86836 1.21141 0.92409 1.02843 0.81844 1.44734 1.09599 1.74924 1.10985 1.15855 0.84287 0.78664 0.81042 1.91002 1.22109 1.54958 1.75623 1.42530 1.09223 1.70446 1.10282 1.17214 0.86752 0.99590 0.88839 1.19992 0.99553 1.16671 0.92266 1.20441 0.93710 0.99957 0.96983 1.21342 0.97280 1.04219 0.96491 1.17477 0.91360 0.87989 0.91390 1.19560 1.01596 1.30441 0.97218 0.90385 1.25894 1.00520 0.93426 0.94278 1.69824 1.36359 1.26011 1.09993 0.86365 0.81772 0.79341 0.79221 1.18813 1.20421 1.19011 1.21004 0.92686 1.09610 0.99794 1.21143 0.74309 0.75651 0.90794 1.93237 1.70746 1.67937 1.83152 1.93166 1.43396 1.96220 1.83580 1.93226 1.85092 1.40476 1.96925 0.92625 0.88211 0.92873 0.88689 0.89215 0.77086 0.77242 0.89392 0.89078 0.86342 0.90941 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 10.70 101.05 1.08 1.15 16 2 O -0.35 -3.00 10.03 -35.23 -0.35 -3.35 16 3 C 0.04 0.30 2.26 -26.73 -0.06 0.24 16 4 H 0.11 0.57 7.79 -51.93 -0.40 0.17 16 5 C 0.14 1.58 5.12 -4.04 -0.02 1.56 16 6 N -0.74 -9.02 5.45 -65.22 -0.36 -9.38 16 7 C 0.70 12.49 8.29 -86.91 -0.72 11.77 16 8 O -0.56 -12.79 14.10 5.29 0.07 -12.72 16 9 N -0.68 -11.98 5.34 -14.27 -0.08 -12.05 16 10 C 0.17 3.82 6.25 -83.76 -0.52 3.30 16 11 C -0.26 -5.79 9.97 -39.10 -0.39 -6.18 16 12 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 13 C -0.17 -4.60 8.69 -38.84 -0.34 -4.93 16 14 C 0.12 3.37 5.57 -106.85 -0.59 2.77 16 15 C -0.46 -12.77 9.05 -37.75 -0.34 -13.11 16 16 H 0.08 2.14 7.90 -52.49 -0.41 1.73 16 17 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 18 N -0.80 -20.93 10.94 55.55 0.61 -20.33 16 19 Si 0.91 19.36 29.59 -169.99 -5.03 14.33 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 22 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 23 C -0.21 -5.50 8.39 -38.69 -0.32 -5.83 16 24 C 0.44 3.98 2.85 37.16 0.11 4.09 16 25 F -0.17 -1.89 16.74 2.25 0.04 -1.85 16 26 F -0.18 -1.58 15.50 2.25 0.03 -1.55 16 27 F -0.18 -1.68 16.80 2.25 0.04 -1.64 16 28 H 0.06 0.28 6.49 -51.93 -0.34 -0.05 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.19 8.08 -51.93 -0.42 -0.23 16 31 H 0.10 1.05 7.80 -51.93 -0.41 0.64 16 32 H 0.09 1.17 7.80 -51.93 -0.41 0.76 16 33 H 0.40 3.46 8.37 -40.82 -0.34 3.11 16 34 H 0.39 5.24 8.84 -40.82 -0.36 4.88 16 35 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 37 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 38 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 39 H 0.11 2.92 6.49 -52.49 -0.34 2.58 16 LS Contribution 346.40 15.07 5.22 5.22 Total: -1.00 -32.78 346.40 -6.57 -39.35 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -4.15 Total: 9.81 kcal Atomic # 6 Polarization: -3.23 SS G_CDS: -2.61 Total: -5.84 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.18 Total: -41.76 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.28 Total: -16.07 kcal Atomic # 9 Polarization: -5.15 SS G_CDS: 0.11 Total: -5.04 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.78 -6.57 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836765450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.380 kcal (2) G-P(sol) polarization free energy of solvation -32.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds