Wall clock time and date at job start Tue Mar 31 2020 16:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00216 * 2 1 4 4 O 1.20818 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.54413 * 129.01468 * 179.97438 * 5 3 2 7 7 C 1.54415 * 78.89684 * 180.65032 * 6 5 3 8 8 C 1.50692 * 129.01177 * 180.64487 * 7 6 5 9 9 O 1.20830 * 120.00665 * 0.02562 * 8 7 6 10 10 O 1.34266 * 119.99818 * 179.97438 * 8 7 6 11 11 C 1.35926 * 117.00341 * 175.01466 * 10 8 7 12 12 C 1.38822 * 120.02147 * 255.27590 * 11 10 8 13 13 C 1.38188 * 120.08443 * 179.97438 * 12 11 10 14 14 C 1.38149 * 120.11972 * 359.79022 * 13 12 11 15 15 C 1.38892 * 120.04231 * 0.46389 * 14 13 12 16 16 O 1.35755 * 120.04246 * 179.79319 * 15 14 13 17 17 C 1.34827 * 117.00052 * 174.12671 * 16 15 14 18 18 H 1.07994 * 120.00480 * 5.06391 * 17 16 15 19 19 C 1.38656 * 120.00113 * 185.06260 * 17 16 15 20 20 N 1.31561 * 119.99566 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47007 * 59.99507 * 21 19 17 23 23 H 1.48497 * 109.47402 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47067 * 299.99894 * 21 19 17 25 25 C 1.38568 * 120.02232 * 75.29108 * 11 10 8 26 26 C 1.54894 * 84.49210 * 43.15615 * 7 6 5 27 27 C 1.54890 * 129.95722 * 301.17848 * 5 3 2 28 28 H 1.08998 * 109.46726 * 59.99453 * 1 2 3 29 29 H 1.08998 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46729 * 300.00061 * 1 2 3 31 31 H 1.09001 * 114.93038 * 68.15731 * 6 5 3 32 32 H 1.09001 * 114.98857 * 293.13893 * 6 5 3 33 33 H 1.08009 * 119.95666 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.93717 * 180.02562 * 13 12 11 35 35 H 1.08004 * 119.98012 * 180.25190 * 14 13 12 36 36 H 0.97003 * 119.99751 * 179.97438 * 20 19 17 37 37 H 1.08008 * 120.06194 * 359.96259 * 25 11 10 38 38 H 1.08998 * 114.97639 * 69.39526 * 26 7 6 39 39 H 1.08999 * 114.97745 * 204.56948 * 26 7 6 40 40 H 1.08998 * 116.12591 * 67.75258 * 27 5 3 41 41 H 1.09000 * 113.83075 * 292.59117 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.4744 2.5237 0.0002 7 6 5.5250 1.3922 -0.0159 8 6 7.0285 1.4937 -0.0152 9 8 7.5609 2.5783 -0.0002 10 8 7.7766 0.3789 -0.0304 11 6 9.1223 0.5401 -0.1341 12 6 9.7624 0.2783 -1.3378 13 6 11.1304 0.4422 -1.4449 14 6 11.8645 0.8711 -0.3561 15 6 11.2301 1.1294 0.8522 16 8 11.9521 1.5468 1.9233 17 6 11.2624 1.8961 3.0279 18 1 10.1916 1.7598 3.0616 19 6 11.9279 2.4305 4.1207 20 7 13.2324 2.5961 4.0799 21 14 10.9724 2.9138 5.6513 22 1 10.2811 1.7200 6.2008 23 1 11.9087 3.4552 6.6690 24 1 9.9680 3.9501 5.3012 25 6 9.8562 0.9654 0.9616 26 6 4.5904 0.7422 -1.0662 27 6 4.5915 0.7131 1.0169 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.4467 3.1122 0.9172 32 1 4.4315 3.1238 -0.9088 33 1 9.1904 -0.0531 -2.1920 34 1 11.6258 0.2383 -2.3826 35 1 12.9330 1.0023 -0.4435 36 1 13.6979 2.9702 4.8442 37 1 9.3599 1.1699 1.8988 38 1 4.5529 1.2536 -2.0280 39 1 4.6714 -0.3419 -1.1461 40 1 4.6726 -0.3727 1.0666 41 1 4.5549 1.1976 1.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842820987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:34 Heat of formation + Delta-G solvation = -47.364099 kcal Electronic energy + Delta-G solvation = -27375.408951 eV Core-core repulsion = 23191.512899 eV Total energy + Delta-G solvation = -4183.896052 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.72635 -40.80418 -40.28110 -38.75239 -37.01449 -36.83865 -35.76705 -32.33126 -29.94379 -29.05589 -28.84062 -26.89941 -26.31870 -26.17073 -25.44351 -24.19570 -22.08027 -21.58466 -20.43106 -19.20102 -18.31262 -17.97119 -17.76608 -17.46232 -16.76637 -16.29317 -15.99593 -15.52466 -15.16562 -14.80884 -14.73041 -14.41621 -14.24581 -14.09660 -13.70267 -13.63831 -13.30500 -12.97802 -12.72781 -12.60781 -12.10833 -12.05197 -11.82195 -11.65515 -11.55681 -11.35975 -11.24494 -11.15746 -11.08186 -10.87382 -10.82172 -10.77500 -10.53579 -10.38379 -10.31667 -9.56355 -8.89297 -8.22351 -7.39556 -6.50322 -4.09821 1.58783 1.64667 2.02934 2.11643 2.17747 2.89703 3.11070 3.13660 3.15613 3.56488 3.71205 3.80235 3.92842 3.93397 4.03303 4.35240 4.44802 4.68377 4.76534 4.85366 5.02966 5.08919 5.10789 5.16599 5.17546 5.31061 5.41163 5.48271 5.50252 5.54858 5.57093 5.73266 5.89458 5.95787 6.11468 6.23557 6.51129 6.81598 6.93795 7.04466 7.08944 7.29467 7.30974 7.53661 7.92791 8.06788 8.94603 9.59974 10.66941 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002810 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.707567 B = 9962.247898 C =11546.158835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.350 6.350 3 C 0.531 3.469 4 O -0.494 6.494 5 C -0.152 4.152 6 C -0.058 4.058 7 C -0.137 4.137 8 C 0.516 3.484 9 O -0.467 6.467 10 O -0.287 6.287 11 C 0.118 3.882 12 C -0.210 4.210 13 C -0.065 4.065 14 C -0.184 4.184 15 C 0.163 3.837 16 O -0.169 6.169 17 C -0.394 4.394 18 H 0.091 0.909 19 C 0.042 3.958 20 N -0.859 5.859 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.268 1.268 25 C -0.229 4.229 26 C -0.068 4.068 27 C -0.069 4.069 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.124 0.876 36 H 0.272 0.728 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.161 -6.564 -8.983 23.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.266 6.266 3 C 0.373 3.627 4 O -0.381 6.381 5 C -0.153 4.153 6 C -0.096 4.096 7 C -0.139 4.139 8 C 0.358 3.642 9 O -0.351 6.351 10 O -0.202 6.202 11 C 0.077 3.923 12 C -0.229 4.229 13 C -0.084 4.084 14 C -0.204 4.204 15 C 0.108 3.892 16 O -0.072 6.072 17 C -0.470 4.470 18 H 0.108 0.892 19 C -0.163 4.163 20 N -0.493 5.493 21 Si 0.765 3.235 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.194 1.194 25 C -0.249 4.249 26 C -0.106 4.106 27 C -0.107 4.107 28 H 0.083 0.917 29 H 0.123 0.877 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.082 0.918 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -20.764 -5.794 -8.743 23.263 hybrid contribution -0.697 0.354 0.844 1.150 sum -21.461 -5.440 -7.899 23.506 Atomic orbital electron populations 1.23347 0.75639 1.04060 1.02791 1.86495 1.23716 1.32645 1.83791 1.21201 0.87940 0.81429 0.72139 1.90700 1.66167 1.36516 1.44724 1.23554 0.87306 1.01830 1.02582 1.23770 0.87552 0.93637 1.04604 1.23046 0.87727 1.01334 1.01751 1.21424 0.86877 0.82581 0.73323 1.90769 1.73152 1.28546 1.42593 1.84475 1.17961 1.34911 1.82882 1.18212 0.78597 1.01419 0.94062 1.20502 0.95222 1.11455 0.95754 1.20491 0.92733 0.97604 0.97536 1.20348 1.00326 1.08436 0.91244 1.19114 0.89324 0.92204 0.88529 1.83998 1.33758 1.70818 1.18611 1.21270 0.92631 1.42806 0.90245 0.89200 1.25289 0.96004 0.96129 0.98838 1.70026 1.07182 1.40821 1.31304 0.85787 0.78868 0.79287 0.79602 1.19389 1.20112 1.19351 1.21207 0.94837 1.09331 0.99484 1.24534 0.88408 1.01941 0.95674 1.24076 0.88393 1.01840 0.96356 0.91662 0.87710 0.91646 0.88816 0.88843 0.86664 0.85904 0.85807 0.91816 0.84992 0.89009 0.88096 0.88000 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -3.01 10.57 -39.26 -0.41 -3.43 16 3 C 0.53 5.39 8.07 36.00 0.29 5.68 16 4 O -0.49 -6.25 16.84 -18.74 -0.32 -6.57 16 5 C -0.15 -1.40 3.61 -170.98 -0.62 -2.02 16 6 C -0.06 -0.61 7.77 -26.70 -0.21 -0.81 16 7 C -0.14 -1.58 3.47 -172.25 -0.60 -2.18 16 8 C 0.52 8.45 7.93 36.00 0.29 8.73 16 9 O -0.47 -9.40 16.52 -18.75 -0.31 -9.71 16 10 O -0.29 -4.99 10.03 -23.63 -0.24 -5.22 16 11 C 0.12 2.34 5.19 -39.24 -0.20 2.14 16 12 C -0.21 -3.74 9.98 -39.38 -0.39 -4.14 16 13 C -0.07 -1.14 10.03 -39.63 -0.40 -1.54 16 14 C -0.18 -3.83 9.99 -39.37 -0.39 -4.22 16 15 C 0.16 3.98 6.65 -39.13 -0.26 3.72 16 16 O -0.17 -4.83 9.76 0.04 0.00 -4.83 16 17 C -0.39 -11.12 9.49 30.89 0.29 -10.83 16 18 H 0.09 2.39 5.20 -52.49 -0.27 2.12 16 19 C 0.04 1.17 5.49 -17.51 -0.10 1.07 16 20 N -0.86 -25.10 13.67 55.48 0.76 -24.34 16 21 Si 0.94 20.71 29.55 -169.99 -5.02 15.69 16 22 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 C -0.23 -5.24 8.58 -39.25 -0.34 -5.58 16 26 C -0.07 -0.58 7.95 -24.72 -0.20 -0.78 16 27 C -0.07 -0.64 7.84 -25.98 -0.20 -0.84 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.37 8.13 -51.93 -0.42 -0.06 16 31 H 0.09 0.96 7.95 -51.93 -0.41 0.55 16 32 H 0.09 0.91 7.91 -51.93 -0.41 0.49 16 33 H 0.12 1.72 8.06 -52.48 -0.42 1.29 16 34 H 0.12 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.12 2.41 8.06 -52.48 -0.42 1.99 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.13 3.11 5.64 -52.48 -0.30 2.81 16 38 H 0.09 0.69 7.91 -51.93 -0.41 0.28 16 39 H 0.10 0.72 7.97 -51.93 -0.41 0.31 16 40 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 41 H 0.09 0.81 7.93 -51.93 -0.41 0.40 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -34.12 366.21 -6.70 -40.83 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -4.71 Total: 2.41 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: -1.97 Total: -10.34 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.76 Total: -24.34 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -1.28 Total: -29.76 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.12 -6.70 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842820987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.537 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds