Wall clock time and date at job start Tue Mar 31 2020 16:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 117.00216 * 2 1 4 4 O 1.20818 * 119.99917 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99875 * 179.97438 * 3 2 1 6 6 C 1.54413 * 129.01468 * 179.97438 * 5 3 2 7 7 C 1.54415 * 78.89684 * 180.65032 * 6 5 3 8 8 C 1.50692 * 129.01177 * 180.64487 * 7 6 5 9 9 O 1.20830 * 120.00665 * 0.02562 * 8 7 6 10 10 O 1.34266 * 119.99818 * 179.97438 * 8 7 6 11 11 C 1.35926 * 117.00341 * 175.01466 * 10 8 7 12 12 C 1.38822 * 120.02147 * 255.27590 * 11 10 8 13 13 C 1.38188 * 120.08443 * 179.97438 * 12 11 10 14 14 C 1.38149 * 120.11972 * 359.79022 * 13 12 11 15 15 C 1.38892 * 120.04231 * 0.46389 * 14 13 12 16 16 O 1.35755 * 120.04246 * 179.79319 * 15 14 13 17 17 C 1.34827 * 117.00052 * 174.12671 * 16 15 14 18 18 H 1.07994 * 120.00480 * 5.06391 * 17 16 15 19 19 C 1.38656 * 120.00113 * 185.06260 * 17 16 15 20 20 N 1.31561 * 119.99566 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00398 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47007 * 59.99507 * 21 19 17 23 23 H 1.48497 * 109.47402 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47067 * 299.99894 * 21 19 17 25 25 C 1.38568 * 120.02232 * 75.29108 * 11 10 8 26 26 C 1.54894 * 84.49210 * 43.15615 * 7 6 5 27 27 C 1.54890 * 129.95722 * 301.17848 * 5 3 2 28 28 H 1.08998 * 109.46726 * 59.99453 * 1 2 3 29 29 H 1.08998 * 109.47512 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.46729 * 300.00061 * 1 2 3 31 31 H 1.09001 * 114.93038 * 68.15731 * 6 5 3 32 32 H 1.09001 * 114.98857 * 293.13893 * 6 5 3 33 33 H 1.08009 * 119.95666 * 0.02562 * 12 11 10 34 34 H 1.08000 * 119.93717 * 180.02562 * 13 12 11 35 35 H 1.08004 * 119.98012 * 180.25190 * 14 13 12 36 36 H 0.97003 * 119.99751 * 179.97438 * 20 19 17 37 37 H 1.08008 * 120.06194 * 359.96259 * 25 11 10 38 38 H 1.08998 * 114.97639 * 69.39526 * 26 7 6 39 39 H 1.08999 * 114.97745 * 204.56948 * 26 7 6 40 40 H 1.08998 * 116.12591 * 67.75258 * 27 5 3 41 41 H 1.09000 * 113.83075 * 292.59117 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 0.0006 6 6 4.4744 2.5237 0.0002 7 6 5.5250 1.3922 -0.0159 8 6 7.0285 1.4937 -0.0152 9 8 7.5609 2.5783 -0.0002 10 8 7.7766 0.3789 -0.0304 11 6 9.1223 0.5401 -0.1341 12 6 9.7624 0.2783 -1.3378 13 6 11.1304 0.4422 -1.4449 14 6 11.8645 0.8711 -0.3561 15 6 11.2301 1.1294 0.8522 16 8 11.9521 1.5468 1.9233 17 6 11.2624 1.8961 3.0279 18 1 10.1916 1.7598 3.0616 19 6 11.9279 2.4305 4.1207 20 7 13.2324 2.5961 4.0799 21 14 10.9724 2.9138 5.6513 22 1 10.2811 1.7200 6.2008 23 1 11.9087 3.4552 6.6690 24 1 9.9680 3.9501 5.3012 25 6 9.8562 0.9654 0.9616 26 6 4.5904 0.7422 -1.0662 27 6 4.5915 0.7131 1.0169 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.4467 3.1122 0.9172 32 1 4.4315 3.1238 -0.9088 33 1 9.1904 -0.0531 -2.1920 34 1 11.6258 0.2383 -2.3826 35 1 12.9330 1.0023 -0.4435 36 1 13.6979 2.9702 4.8442 37 1 9.3599 1.1699 1.8988 38 1 4.5529 1.2536 -2.0280 39 1 4.6714 -0.3419 -1.1461 40 1 4.6726 -0.3727 1.0666 41 1 4.5549 1.1976 1.9926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842820987.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:33 Heat of formation + Delta-G solvation = -66.945110 kcal Electronic energy + Delta-G solvation = -27376.258047 eV Core-core repulsion = 23191.512899 eV Total energy + Delta-G solvation = -4184.745148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.57431 -42.15443 -41.10269 -40.48122 -38.58928 -37.58836 -37.38445 -34.35092 -31.52965 -30.69884 -29.55378 -27.92148 -27.34987 -27.03571 -26.91914 -25.27119 -23.59409 -23.10800 -21.57590 -20.20995 -20.12408 -19.43715 -18.70647 -18.32174 -17.88679 -17.51287 -17.39655 -16.88061 -16.64673 -16.07322 -16.00971 -15.61854 -15.47815 -15.42450 -15.16288 -14.72392 -14.53556 -14.35035 -14.06132 -13.74318 -13.30472 -13.21250 -13.05814 -12.84908 -12.74611 -12.69488 -12.53339 -12.35180 -12.21104 -12.17959 -11.94926 -11.85492 -11.59780 -11.57725 -11.52844 -11.39179 -10.86473 -9.82972 -9.17189 -8.53926 -6.23199 0.08395 0.54030 0.74191 0.87271 1.29519 1.30637 1.40391 1.45750 1.70443 2.12239 2.71100 2.80367 2.86406 3.04089 3.04461 3.12747 3.21013 3.36463 3.52641 3.82351 3.98618 4.18237 4.30364 4.30688 4.34732 4.41898 4.43075 4.51901 4.56007 4.70141 4.73096 4.74493 4.78752 4.79625 4.81296 4.92884 5.00474 5.22405 5.31355 5.39873 5.48126 5.52995 5.92823 5.96861 6.58337 6.64925 6.89807 7.65001 8.68092 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.013525 B = 0.002810 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.707567 B = 9962.247898 C =11546.158835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.537 3.463 4 O -0.525 6.525 5 C -0.142 4.142 6 C -0.066 4.066 7 C -0.160 4.160 8 C 0.519 3.481 9 O -0.514 6.514 10 O -0.281 6.281 11 C 0.110 3.890 12 C -0.187 4.187 13 C -0.048 4.048 14 C -0.192 4.192 15 C 0.125 3.875 16 O -0.220 6.220 17 C -0.418 4.418 18 H 0.091 0.909 19 C -0.015 4.015 20 N -0.912 5.912 21 Si 1.013 2.987 22 H -0.255 1.255 23 H -0.264 1.264 24 H -0.264 1.264 25 C -0.247 4.247 26 C -0.047 4.047 27 C -0.061 4.061 28 H 0.066 0.934 29 H 0.135 0.865 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.177 0.823 35 H 0.131 0.869 36 H 0.276 0.724 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.817 -8.431 -11.101 27.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.380 3.620 4 O -0.414 6.414 5 C -0.144 4.144 6 C -0.103 4.103 7 C -0.161 4.161 8 C 0.364 3.636 9 O -0.400 6.400 10 O -0.195 6.195 11 C 0.069 3.931 12 C -0.205 4.205 13 C -0.066 4.066 14 C -0.211 4.211 15 C 0.074 3.926 16 O -0.126 6.126 17 C -0.494 4.494 18 H 0.108 0.892 19 C -0.214 4.214 20 N -0.550 5.550 21 Si 0.832 3.168 22 H -0.179 1.179 23 H -0.188 1.188 24 H -0.188 1.188 25 C -0.267 4.267 26 C -0.084 4.084 27 C -0.098 4.098 28 H 0.085 0.915 29 H 0.153 0.847 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.179 0.821 34 H 0.195 0.805 35 H 0.149 0.851 36 H 0.085 0.915 37 H 0.129 0.871 38 H 0.123 0.877 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.462 -7.715 -10.911 27.001 hybrid contribution -0.039 0.803 1.178 1.426 sum -23.501 -6.913 -9.733 26.360 Atomic orbital electron populations 1.23659 0.73953 1.06120 1.02840 1.86485 1.25346 1.31535 1.83191 1.21217 0.88004 0.81461 0.71312 1.90696 1.66816 1.37584 1.46340 1.23287 0.87062 1.00816 1.03185 1.23884 0.87596 0.94151 1.04651 1.23054 0.84680 1.03295 1.05116 1.22262 0.88480 0.81479 0.71397 1.90753 1.74328 1.30013 1.44872 1.84498 1.16670 1.35451 1.82930 1.18410 0.79882 1.00821 0.93976 1.21129 0.95688 1.07888 0.95811 1.21095 0.92579 0.94718 0.98176 1.20734 1.01210 1.08210 0.90953 1.19717 0.90345 0.93415 0.89103 1.83957 1.35082 1.73746 1.19838 1.21641 0.92973 1.43695 0.91088 0.89152 1.26515 0.97099 0.95738 1.02048 1.70150 1.09035 1.43068 1.32707 0.84744 0.77544 0.79345 0.75212 1.17887 1.18794 1.18839 1.21195 0.94683 1.10786 1.00036 1.24580 0.85468 1.03209 0.95132 1.24153 0.86871 1.02883 0.95889 0.91503 0.84669 0.91807 0.89535 0.88371 0.82148 0.80545 0.85121 0.91527 0.87150 0.87660 0.85789 0.85964 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.56 113.37 1.20 1.44 16 2 O -0.35 -5.07 10.57 -51.42 -0.54 -5.61 16 3 C 0.54 9.78 8.07 71.24 0.57 10.35 16 4 O -0.53 -12.65 16.84 21.99 0.37 -12.28 16 5 C -0.14 -2.30 3.61 -62.85 -0.23 -2.53 16 6 C -0.07 -1.29 7.77 30.62 0.24 -1.05 16 7 C -0.16 -3.41 3.47 -63.67 -0.22 -3.64 16 8 C 0.52 16.61 7.93 71.23 0.56 17.18 16 9 O -0.51 -21.01 16.52 21.95 0.36 -20.64 16 10 O -0.28 -9.33 10.03 4.49 0.05 -9.28 16 11 C 0.11 4.26 5.19 22.49 0.12 4.38 16 12 C -0.19 -5.93 9.98 22.40 0.22 -5.70 16 13 C -0.05 -1.50 10.03 22.24 0.22 -1.28 16 14 C -0.19 -7.92 9.99 22.41 0.22 -7.69 16 15 C 0.13 6.39 6.65 22.56 0.15 6.54 16 16 O -0.22 -13.46 9.76 -22.76 -0.22 -13.68 16 17 C -0.42 -25.21 9.49 67.92 0.64 -24.56 16 18 H 0.09 5.19 5.20 -2.91 -0.02 5.17 16 19 C -0.02 -0.89 5.49 84.83 0.47 -0.42 16 20 N -0.91 -56.23 13.67 21.61 0.30 -55.93 16 21 Si 1.01 44.05 29.55 68.60 2.03 46.08 16 22 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 24 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 25 C -0.25 -11.74 8.58 22.48 0.19 -11.54 16 26 C -0.05 -0.64 7.95 31.90 0.25 -0.38 16 27 C -0.06 -0.99 7.84 31.08 0.24 -0.75 16 28 H 0.07 0.59 8.13 -2.39 -0.02 0.57 16 29 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 31 H 0.09 1.78 7.95 -2.39 -0.02 1.76 16 32 H 0.10 1.80 7.91 -2.39 -0.02 1.78 16 33 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.18 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.13 5.11 8.06 -2.91 -0.02 5.08 16 36 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 37 H 0.11 5.59 5.64 -2.91 -0.02 5.57 16 38 H 0.11 1.19 7.91 -2.39 -0.02 1.17 16 39 H 0.12 1.17 7.97 -2.39 -0.02 1.15 16 40 H 0.12 1.51 7.97 -2.39 -0.02 1.49 16 41 H 0.09 1.49 7.93 -2.39 -0.02 1.47 16 Total: -1.00 -81.13 366.21 8.28 -72.86 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: 1.08 Total: 18.15 kcal Atomic # 6 Polarization: -24.52 SS G_CDS: 4.86 Total: -19.66 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: 0.01 Total: -61.49 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -81.13 8.28 -72.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842820987.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.912 kcal (2) G-P(sol) polarization free energy of solvation -81.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds