Wall clock time and date at job start Tue Mar 31 2020 16:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00077 * 2 1 4 4 O 1.20829 * 120.00422 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.50702 * 115.55067 * 325.58186 * 5 3 2 7 7 O 1.20759 * 120.00330 * 214.32894 * 6 5 3 8 8 C 1.50707 * 119.99862 * 34.32598 * 6 5 3 9 9 O 1.45198 * 109.47220 * 180.02562 * 8 6 5 10 10 C 1.34697 * 117.00144 * 180.02562 * 9 8 6 11 11 O 1.21467 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.47768 * 120.00334 * 180.02562 * 10 9 8 13 13 C 1.39967 * 120.02884 * 359.71809 * 12 10 9 14 14 C 1.38321 * 120.35463 * 179.78850 * 13 12 10 15 15 C 1.37755 * 120.41599 * 0.47087 * 14 13 12 16 16 C 1.40754 * 120.05274 * 359.78786 * 15 14 13 17 17 C 1.41437 * 120.17548 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99868 * 150.18011 * 17 16 15 19 19 C 1.39934 * 119.99873 * 330.17402 * 17 16 15 20 20 N 1.30829 * 119.99932 * 161.73294 * 19 17 16 21 21 Si 1.86797 * 120.00278 * 341.73199 * 19 17 16 22 22 H 1.48494 * 109.46985 * 95.41374 * 21 19 17 23 23 H 1.48505 * 109.47267 * 215.41265 * 21 19 17 24 24 H 1.48497 * 109.47082 * 335.41154 * 21 19 17 25 25 C 1.39053 * 120.03354 * 180.02562 * 12 10 9 26 26 C 1.53004 * 117.52008 * 111.27953 * 5 3 2 27 27 C 1.53001 * 117.50411 * 179.91090 * 5 3 2 28 28 H 1.09004 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47341 * 300.00184 * 1 2 3 30 30 H 1.08999 * 109.47082 * 60.00508 * 1 2 3 31 31 H 1.09000 * 109.46956 * 60.00232 * 8 6 5 32 32 H 1.09000 * 109.47011 * 300.00683 * 8 6 5 33 33 H 1.08000 * 119.82206 * 0.02562 * 13 12 10 34 34 H 1.07997 * 119.78723 * 180.23592 * 14 13 12 35 35 H 1.08001 * 119.97242 * 179.76713 * 15 14 13 36 36 H 0.97001 * 120.00694 * 180.02562 * 20 19 17 37 37 H 1.07995 * 120.20520 * 359.94960 * 25 12 10 38 38 H 1.08996 * 117.49856 * 214.97503 * 26 5 3 39 39 H 1.09001 * 117.49694 * 359.97438 * 26 5 3 40 40 H 1.08997 * 117.49366 * 359.97438 * 27 5 3 41 41 H 1.08998 * 117.50300 * 144.99208 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2738 0.1889 0.7696 7 8 5.3017 0.4344 1.3539 8 6 3.6984 -1.2034 0.8095 9 8 4.5572 -2.0592 1.6085 10 6 4.1822 -3.3458 1.7448 11 8 3.1654 -3.7418 1.2112 12 6 5.0071 -4.2751 2.5444 13 6 6.1814 -3.8207 3.1555 14 6 6.9564 -4.6837 3.9091 15 6 6.5870 -6.0023 4.0589 16 6 5.4123 -6.4791 3.4475 17 6 5.0308 -7.8326 3.5992 18 1 3.9858 -8.1046 3.5793 19 6 6.0074 -8.8193 3.7750 20 7 5.6771 -9.9868 4.2642 21 14 7.7827 -8.4694 3.3111 22 1 8.5310 -8.0274 4.5151 23 1 8.4046 -9.7034 2.7670 24 1 7.8238 -7.3994 2.2822 25 6 4.6208 -5.6035 2.6851 26 6 4.2470 1.8034 -1.2637 27 6 4.2008 2.6670 -0.0016 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.6328 -1.5986 -0.2042 32 1 2.7030 -1.1726 1.2526 33 1 6.4821 -2.7897 3.0413 34 1 7.8587 -4.3224 4.3797 35 1 7.1994 -6.6709 4.6458 36 1 6.3540 -10.6707 4.3865 37 1 3.7178 -5.9598 2.2119 38 1 5.2065 1.3657 -1.5391 39 1 3.6063 2.0937 -2.0963 40 1 3.5297 3.5259 -0.0038 41 1 5.1299 2.7976 0.5533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848702550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:37 Heat of formation + Delta-G solvation = -151.596114 kcal Electronic energy + Delta-G solvation = -27398.093348 eV Core-core repulsion = 23209.677457 eV Total energy + Delta-G solvation = -4188.415891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.47288 -40.24428 -39.54812 -37.73878 -37.39952 -36.22963 -35.89763 -33.73294 -31.01646 -30.26428 -29.84733 -28.22725 -25.65329 -25.15772 -23.56026 -23.15741 -22.24063 -20.77280 -20.41608 -19.98273 -18.40022 -17.69584 -17.47273 -17.03757 -16.80277 -16.31852 -16.16839 -15.81622 -15.62231 -14.93617 -14.69813 -14.64667 -14.41756 -13.84858 -13.70452 -13.63487 -13.09939 -12.87829 -12.78494 -12.60080 -12.25052 -12.14285 -12.05768 -11.84651 -11.65365 -11.25609 -11.24041 -11.11744 -11.01470 -10.85337 -10.63129 -10.57248 -10.23396 -10.06567 -9.84827 -9.70963 -9.27449 -7.99891 -7.82012 -7.03662 -4.59302 1.21569 1.63290 1.65322 2.13271 2.47741 2.53858 3.03177 3.06341 3.14741 3.20069 3.32054 3.59796 3.90114 3.91384 4.09757 4.22050 4.40670 4.61654 4.76189 4.84786 4.97527 4.99840 5.05553 5.14664 5.24690 5.27506 5.30627 5.36727 5.49446 5.86412 5.88119 6.14659 6.26968 6.56494 6.60343 6.62065 6.91175 6.99038 7.14197 7.20048 7.36559 7.45801 7.68235 7.84543 8.20642 8.23540 8.46273 8.66617 9.98474 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002498 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.457973 B =11206.432800 C =12057.665458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.350 6.350 3 C 0.504 3.496 4 O -0.495 6.495 5 C -0.207 4.207 6 C 0.397 3.603 7 O -0.411 6.411 8 C 0.024 3.976 9 O -0.339 6.339 10 C 0.514 3.486 11 O -0.515 6.515 12 C -0.097 4.097 13 C -0.189 4.189 14 C -0.089 4.089 15 C -0.211 4.211 16 C 0.079 3.921 17 C -0.444 4.444 18 H 0.094 0.906 19 C 0.084 3.916 20 N -0.803 5.803 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.243 1.243 25 C -0.133 4.133 26 C -0.116 4.116 27 C -0.113 4.113 28 H 0.109 0.891 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.287 0.713 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.122 0.878 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 19.850 -9.809 22.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.266 6.266 3 C 0.346 3.654 4 O -0.382 6.382 5 C -0.209 4.209 6 C 0.269 3.731 7 O -0.280 6.280 8 C -0.051 4.051 9 O -0.256 6.256 10 C 0.361 3.639 11 O -0.405 6.405 12 C -0.098 4.098 13 C -0.209 4.209 14 C -0.107 4.107 15 C -0.230 4.230 16 C 0.076 3.924 17 C -0.472 4.472 18 H 0.112 0.888 19 C -0.136 4.136 20 N -0.427 5.427 21 Si 0.734 3.266 22 H -0.194 1.194 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.152 4.152 26 C -0.153 4.153 27 C -0.149 4.149 28 H 0.127 0.873 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.786 19.880 -9.573 22.387 hybrid contribution 0.195 -0.117 -0.197 0.301 sum -3.591 19.763 -9.769 22.336 Atomic orbital electron populations 1.23413 0.75105 1.04626 1.02750 1.86556 1.24343 1.32117 1.83557 1.21882 0.89020 0.81930 0.72520 1.90685 1.66131 1.36311 1.45084 1.21510 0.89686 1.00694 1.09047 1.23165 0.84468 0.88304 0.77169 1.90469 1.20904 1.82892 1.33760 1.23225 0.95266 0.88167 0.98400 1.86656 1.51246 1.21787 1.65918 1.21879 0.83846 0.80043 0.78124 1.90770 1.25784 1.77317 1.46597 1.18729 0.96681 0.92317 1.02043 1.20675 0.96532 0.99275 1.04396 1.20599 0.98292 0.93725 0.98116 1.21287 1.01057 0.95305 1.05374 1.17636 0.91143 0.93804 0.89854 1.19473 0.96512 0.89569 1.41617 0.88783 1.26151 1.01792 0.94466 0.91159 1.69683 1.37519 1.05173 1.30304 0.86346 0.80912 0.78477 0.80827 1.19436 1.21550 1.16621 1.21271 1.01942 0.91096 1.00907 1.23232 1.01839 1.00016 0.90209 1.23267 1.02602 0.89904 0.99167 0.87250 0.91509 0.91554 0.87343 0.86845 0.87023 0.87858 0.87630 0.90262 0.86414 0.86203 0.86537 0.86028 0.85754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 101.05 1.07 1.31 16 2 O -0.35 -3.39 7.46 -39.24 -0.29 -3.68 16 3 C 0.50 5.13 7.47 36.01 0.27 5.40 16 4 O -0.49 -5.84 16.01 -18.75 -0.30 -6.14 16 5 C -0.21 -1.91 2.53 -156.81 -0.40 -2.31 16 6 C 0.40 4.77 6.85 -29.03 -0.20 4.57 16 7 O -0.41 -6.02 16.40 -13.71 -0.22 -6.24 16 8 C 0.02 0.32 4.60 36.01 0.17 0.49 16 9 O -0.34 -5.92 8.99 -47.18 -0.42 -6.35 16 10 C 0.51 10.22 7.90 34.63 0.27 10.49 16 11 O -0.52 -10.72 16.12 -19.24 -0.31 -11.03 16 12 C -0.10 -2.10 5.87 -105.05 -0.62 -2.71 16 13 C -0.19 -3.91 9.62 -38.90 -0.37 -4.28 16 14 C -0.09 -1.85 10.01 -39.73 -0.40 -2.25 16 15 C -0.21 -4.88 7.17 -38.81 -0.28 -5.16 16 16 C 0.08 1.94 5.10 -106.87 -0.55 1.40 16 17 C -0.44 -11.68 9.57 -37.73 -0.36 -12.04 16 18 H 0.09 2.59 8.06 -52.48 -0.42 2.17 16 19 C 0.08 2.13 5.40 -17.34 -0.09 2.04 16 20 N -0.80 -20.85 13.93 55.55 0.77 -20.07 16 21 Si 0.91 20.02 24.52 -169.99 -4.17 15.85 16 22 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 23 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.24 -5.48 6.86 56.52 0.39 -5.10 16 25 C -0.13 -3.12 9.34 -38.42 -0.36 -3.48 16 26 C -0.12 -0.72 9.94 -26.73 -0.27 -0.99 16 27 C -0.11 -0.82 9.56 -26.73 -0.26 -1.08 16 28 H 0.11 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 30 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.11 1.45 6.42 -51.93 -0.33 1.12 16 33 H 0.11 2.12 7.59 -52.49 -0.40 1.72 16 34 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 35 H 0.11 2.41 4.72 -52.49 -0.25 2.16 16 36 H 0.29 6.72 8.30 -40.82 -0.34 6.38 16 37 H 0.12 2.74 7.64 -52.49 -0.40 2.34 16 38 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.12 0.82 7.67 -51.93 -0.40 0.42 16 41 H 0.12 0.89 7.67 -51.93 -0.40 0.50 16 LS Contribution 360.54 15.07 5.43 5.43 Total: -1.00 -30.69 360.54 -6.61 -37.30 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -4.73 Total: 3.52 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -2.37 Total: -8.60 kcal Atomic # 7 Polarization: -20.85 SS G_CDS: 0.77 Total: -20.07 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -1.55 Total: -33.43 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.17 Total: 15.85 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.69 -6.61 -37.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848702550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.294 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds