Wall clock time and date at job start Tue Mar 31 2020 16:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34222 * 117.00077 * 2 1 4 4 O 1.20829 * 120.00422 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00217 * 179.97438 * 3 2 1 6 6 C 1.50702 * 115.55067 * 325.58186 * 5 3 2 7 7 O 1.20759 * 120.00330 * 214.32894 * 6 5 3 8 8 C 1.50707 * 119.99862 * 34.32598 * 6 5 3 9 9 O 1.45198 * 109.47220 * 180.02562 * 8 6 5 10 10 C 1.34697 * 117.00144 * 180.02562 * 9 8 6 11 11 O 1.21467 * 120.00041 * 359.97438 * 10 9 8 12 12 C 1.47768 * 120.00334 * 180.02562 * 10 9 8 13 13 C 1.39967 * 120.02884 * 359.71809 * 12 10 9 14 14 C 1.38321 * 120.35463 * 179.78850 * 13 12 10 15 15 C 1.37755 * 120.41599 * 0.47087 * 14 13 12 16 16 C 1.40754 * 120.05274 * 359.78786 * 15 14 13 17 17 C 1.41437 * 120.17548 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99868 * 150.18011 * 17 16 15 19 19 C 1.39934 * 119.99873 * 330.17402 * 17 16 15 20 20 N 1.30829 * 119.99932 * 161.73294 * 19 17 16 21 21 Si 1.86797 * 120.00278 * 341.73199 * 19 17 16 22 22 H 1.48494 * 109.46985 * 95.41374 * 21 19 17 23 23 H 1.48505 * 109.47267 * 215.41265 * 21 19 17 24 24 H 1.48497 * 109.47082 * 335.41154 * 21 19 17 25 25 C 1.39053 * 120.03354 * 180.02562 * 12 10 9 26 26 C 1.53004 * 117.52008 * 111.27953 * 5 3 2 27 27 C 1.53001 * 117.50411 * 179.91090 * 5 3 2 28 28 H 1.09004 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47341 * 300.00184 * 1 2 3 30 30 H 1.08999 * 109.47082 * 60.00508 * 1 2 3 31 31 H 1.09000 * 109.46956 * 60.00232 * 8 6 5 32 32 H 1.09000 * 109.47011 * 300.00683 * 8 6 5 33 33 H 1.08000 * 119.82206 * 0.02562 * 13 12 10 34 34 H 1.07997 * 119.78723 * 180.23592 * 14 13 12 35 35 H 1.08001 * 119.97242 * 179.76713 * 15 14 13 36 36 H 0.97001 * 120.00694 * 180.02562 * 20 19 17 37 37 H 1.07995 * 120.20520 * 359.94960 * 25 12 10 38 38 H 1.08996 * 117.49856 * 214.97503 * 26 5 3 39 39 H 1.09001 * 117.49694 * 359.97438 * 26 5 3 40 40 H 1.08997 * 117.49366 * 359.97438 * 27 5 3 41 41 H 1.08998 * 117.50300 * 144.99208 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2738 0.1889 0.7696 7 8 5.3017 0.4344 1.3539 8 6 3.6984 -1.2034 0.8095 9 8 4.5572 -2.0592 1.6085 10 6 4.1822 -3.3458 1.7448 11 8 3.1654 -3.7418 1.2112 12 6 5.0071 -4.2751 2.5444 13 6 6.1814 -3.8207 3.1555 14 6 6.9564 -4.6837 3.9091 15 6 6.5870 -6.0023 4.0589 16 6 5.4123 -6.4791 3.4475 17 6 5.0308 -7.8326 3.5992 18 1 3.9858 -8.1046 3.5793 19 6 6.0074 -8.8193 3.7750 20 7 5.6771 -9.9868 4.2642 21 14 7.7827 -8.4694 3.3111 22 1 8.5310 -8.0274 4.5151 23 1 8.4046 -9.7034 2.7670 24 1 7.8238 -7.3994 2.2822 25 6 4.6208 -5.6035 2.6851 26 6 4.2470 1.8034 -1.2637 27 6 4.2008 2.6670 -0.0016 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.6328 -1.5986 -0.2042 32 1 2.7030 -1.1726 1.2526 33 1 6.4821 -2.7897 3.0413 34 1 7.8587 -4.3224 4.3797 35 1 7.1994 -6.6709 4.6458 36 1 6.3540 -10.6707 4.3865 37 1 3.7178 -5.9598 2.2119 38 1 5.2065 1.3657 -1.5391 39 1 3.6063 2.0937 -2.0963 40 1 3.5297 3.5259 -0.0038 41 1 5.1299 2.7976 0.5533 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848702550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:36 Heat of formation + Delta-G solvation = -167.299962 kcal Electronic energy + Delta-G solvation = -27398.774318 eV Core-core repulsion = 23209.677457 eV Total energy + Delta-G solvation = -4189.096861 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.30013 -41.57921 -40.61217 -39.41560 -38.22416 -37.43028 -36.91305 -35.59849 -32.74342 -31.95474 -30.98460 -28.96919 -27.24218 -26.31199 -25.02653 -23.68024 -23.21459 -22.54219 -21.99479 -20.79055 -19.83705 -18.85065 -18.55512 -18.16548 -17.93075 -17.82366 -17.37899 -17.09860 -16.54923 -16.47576 -16.02109 -15.80521 -15.58061 -15.31214 -14.82117 -14.60274 -14.45765 -14.32670 -14.13460 -13.86556 -13.70125 -13.39539 -13.07510 -12.87023 -12.71186 -12.64098 -12.52784 -12.37108 -12.06109 -11.91328 -11.85080 -11.78981 -11.72466 -11.67040 -11.51905 -11.10097 -10.93751 -9.74982 -9.65503 -8.92246 -6.56325 -0.08156 0.36386 0.70092 0.84333 1.26767 1.27050 1.42047 1.47041 1.48132 1.62565 2.11591 2.42919 2.55706 2.58192 3.22705 3.38206 3.46536 3.59337 3.73397 3.82566 4.03794 4.15431 4.22659 4.22924 4.30388 4.41498 4.46561 4.53439 4.54264 4.70750 4.78863 4.83036 4.84880 4.99958 5.03505 5.15409 5.16430 5.35767 5.60254 5.67792 5.80615 6.03607 6.06697 6.26902 6.45221 6.59291 6.66033 6.73079 8.16162 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.023299 B = 0.002498 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.457973 B =11206.432800 C =12057.665458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.507 3.493 4 O -0.515 6.515 5 C -0.222 4.222 6 C 0.410 3.590 7 O -0.440 6.440 8 C 0.014 3.986 9 O -0.341 6.341 10 C 0.520 3.480 11 O -0.529 6.529 12 C -0.104 4.104 13 C -0.168 4.168 14 C -0.086 4.086 15 C -0.214 4.214 16 C 0.064 3.936 17 C -0.483 4.483 18 H 0.057 0.943 19 C 0.048 3.952 20 N -0.845 5.845 21 Si 0.961 3.039 22 H -0.248 1.248 23 H -0.277 1.277 24 H -0.251 1.251 25 C -0.152 4.152 26 C -0.093 4.093 27 C -0.108 4.108 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.119 0.881 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.296 0.704 37 H 0.105 0.895 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.127 0.873 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.875 22.657 -10.747 25.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.351 3.649 4 O -0.403 6.403 5 C -0.225 4.225 6 C 0.283 3.717 7 O -0.312 6.312 8 C -0.059 4.059 9 O -0.257 6.257 10 C 0.367 3.633 11 O -0.420 6.420 12 C -0.105 4.105 13 C -0.187 4.187 14 C -0.104 4.104 15 C -0.233 4.233 16 C 0.062 3.938 17 C -0.512 4.512 18 H 0.075 0.925 19 C -0.167 4.167 20 N -0.470 5.470 21 Si 0.783 3.217 22 H -0.172 1.172 23 H -0.203 1.203 24 H -0.174 1.174 25 C -0.172 4.172 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.129 0.871 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.145 0.855 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.875 22.699 -10.510 25.084 hybrid contribution -0.513 -0.748 0.042 0.908 sum -2.389 21.951 -10.468 24.436 Atomic orbital electron populations 1.23628 0.73914 1.05763 1.03222 1.86536 1.25640 1.32041 1.83326 1.22009 0.89304 0.81738 0.71881 1.90677 1.66574 1.36852 1.46243 1.21443 0.88943 1.00766 1.11316 1.23196 0.83894 0.88021 0.76544 1.90465 1.22276 1.83227 1.35204 1.23644 0.95100 0.88480 0.98709 1.86599 1.51987 1.20726 1.66417 1.21490 0.83262 0.80789 0.77728 1.90763 1.26295 1.77875 1.47085 1.18933 0.97397 0.92035 1.02174 1.21081 0.95126 1.00396 1.02078 1.21039 0.99494 0.92454 0.97401 1.21481 1.00231 0.96689 1.04928 1.17728 0.92394 0.93252 0.90437 1.19427 0.95290 0.91290 1.45206 0.92491 1.26848 1.05241 0.93990 0.90645 1.69711 1.39128 1.06205 1.32005 0.85549 0.76638 0.78536 0.80929 1.17235 1.20296 1.17422 1.21226 1.01952 0.92283 1.01744 1.23481 1.02079 0.97816 0.89611 1.23376 1.02356 0.88917 0.99800 0.85845 0.91558 0.90630 0.85706 0.86327 0.84388 0.83609 0.87127 0.89347 0.87707 0.84927 0.84675 0.85456 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.44 7.46 -51.34 -0.38 -6.82 16 3 C 0.51 9.45 7.47 71.24 0.53 9.99 16 4 O -0.51 -11.36 16.01 21.96 0.35 -11.00 16 5 C -0.22 -3.61 2.53 -53.67 -0.14 -3.74 16 6 C 0.41 9.01 6.85 29.10 0.20 9.21 16 7 O -0.44 -12.01 16.40 17.40 0.29 -11.73 16 8 C 0.01 0.36 4.60 71.24 0.33 0.68 16 9 O -0.34 -11.22 8.99 -49.67 -0.45 -11.67 16 10 C 0.52 20.09 7.90 70.34 0.56 20.64 16 11 O -0.53 -21.82 16.12 19.94 0.32 -21.50 16 12 C -0.10 -4.41 5.87 -20.14 -0.12 -4.53 16 13 C -0.17 -6.38 9.62 22.71 0.22 -6.16 16 14 C -0.09 -3.26 10.01 22.17 0.22 -3.04 16 15 C -0.21 -9.56 7.17 22.77 0.16 -9.39 16 16 C 0.06 3.24 5.10 -21.32 -0.11 3.13 16 17 C -0.48 -26.80 9.57 23.47 0.22 -26.58 16 18 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 19 C 0.05 2.51 5.40 85.25 0.46 2.97 16 20 N -0.84 -45.44 13.93 21.82 0.30 -45.13 16 21 Si 0.96 40.68 24.52 68.60 1.68 42.37 16 22 H -0.25 -9.59 6.71 99.48 0.67 -8.92 16 23 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 24 H -0.25 -10.80 6.86 99.48 0.68 -10.12 16 25 C -0.15 -7.31 9.34 23.02 0.21 -7.10 16 26 C -0.09 -0.86 9.94 30.60 0.30 -0.56 16 27 C -0.11 -1.30 9.56 30.60 0.29 -1.01 16 28 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 0.87 8.13 -2.39 -0.02 0.85 16 30 H 0.07 0.85 8.13 -2.39 -0.02 0.83 16 31 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.12 2.87 6.42 -2.39 -0.02 2.85 16 33 H 0.14 4.60 7.59 -2.91 -0.02 4.57 16 34 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 35 H 0.11 4.81 4.72 -2.91 -0.01 4.79 16 36 H 0.30 14.19 8.30 -92.71 -0.77 13.42 16 37 H 0.10 5.17 7.64 -2.91 -0.02 5.15 16 38 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.14 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.13 1.42 7.67 -2.39 -0.02 1.40 16 41 H 0.13 1.52 7.67 -2.39 -0.02 1.50 16 Total: -1.00 -67.80 360.54 7.68 -60.12 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 1.01 Total: 19.30 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: 4.55 Total: -13.93 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.30 Total: -45.13 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: 0.13 Total: -62.72 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.68 Total: 42.37 kcal Total: -67.80 7.68 -60.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848702550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.175 kcal (2) G-P(sol) polarization free energy of solvation -67.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds