Wall clock time and date at job start Tue Mar 31 2020 16:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34239 * 116.99790 * 2 1 4 4 O 1.20822 * 120.00012 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99895 * 180.02562 * 3 2 1 6 6 C 1.50705 * 115.54975 * 325.58616 * 5 3 2 7 7 O 1.20762 * 119.99315 * 214.33022 * 6 5 3 8 8 C 1.50693 * 120.00277 * 34.32655 * 6 5 3 9 9 O 1.45200 * 109.47169 * 180.02562 * 8 6 5 10 10 C 1.34775 * 116.99950 * 180.02562 * 9 8 6 11 11 O 1.21505 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.47508 * 120.00071 * 179.72035 * 10 9 8 13 13 C 1.40066 * 119.89924 * 0.02562 * 12 10 9 14 14 C 1.36306 * 120.10056 * 179.75324 * 13 12 10 15 15 C 1.40895 * 119.89553 * 0.54079 * 14 13 12 16 16 C 1.41091 * 120.09797 * 179.69407 * 15 14 13 17 17 H 1.08001 * 120.00385 * 204.66104 * 16 15 14 18 18 C 1.40249 * 119.99988 * 24.65675 * 16 15 14 19 19 N 1.30631 * 119.99887 * 17.87870 * 18 16 15 20 20 Si 1.86798 * 119.99967 * 197.87926 * 18 16 15 21 21 H 1.48495 * 109.47247 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47099 * 120.00351 * 20 18 16 23 23 H 1.48504 * 109.47190 * 239.99883 * 20 18 16 24 24 C 1.40898 * 119.80274 * 359.71376 * 15 14 13 25 25 C 1.36298 * 119.90137 * 359.97438 * 24 15 14 26 26 C 1.52998 * 117.52068 * 111.28415 * 5 3 2 27 27 C 1.52995 * 60.00261 * 107.48071 * 26 5 3 28 28 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46641 * 299.99230 * 1 2 3 30 30 H 1.08991 * 109.47254 * 59.99642 * 1 2 3 31 31 H 1.09006 * 109.47116 * 60.00261 * 8 6 5 32 32 H 1.09001 * 109.47449 * 300.00585 * 8 6 5 33 33 H 1.08002 * 119.94684 * 0.02562 * 13 12 10 34 34 H 1.08004 * 120.04604 * 180.25223 * 14 13 12 35 35 H 0.97002 * 120.00269 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.04752 * 179.97438 * 24 15 14 37 37 H 1.07994 * 119.95121 * 179.97438 * 25 24 15 38 38 H 1.08999 * 117.50350 * 214.97096 * 26 5 3 39 39 H 1.09006 * 117.49386 * 359.97438 * 26 5 3 40 40 H 1.08996 * 117.50146 * 252.51814 * 27 26 5 41 41 H 1.08995 * 117.49800 * 107.48754 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2744 0.1887 0.7674 7 8 5.3028 0.4341 1.3509 8 6 3.6992 -1.2036 0.8071 9 8 4.5586 -2.0597 1.6050 10 6 4.1835 -3.3470 1.7411 11 8 3.1665 -3.7432 1.2072 12 6 5.0112 -4.2767 2.5326 13 6 6.1863 -3.8192 3.1423 14 6 6.9516 -4.6735 3.8788 15 6 6.5650 -6.0213 4.0168 16 6 7.3574 -6.9108 4.7729 17 1 7.3178 -7.9717 4.5741 18 6 8.1966 -6.4175 5.7824 19 7 8.0036 -5.2188 6.2644 20 14 9.5904 -7.4744 6.4378 21 1 9.5952 -8.7808 5.7319 22 1 10.8850 -6.7834 6.2101 23 1 9.3988 -7.6995 7.8932 24 6 5.3850 -6.4783 3.3973 25 6 4.6225 -5.6155 2.6680 26 6 4.2460 1.8041 -1.2651 27 6 4.2007 2.6673 -0.0026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.6328 -1.5983 -0.2068 32 1 2.7041 -1.1731 1.2510 33 1 6.4841 -2.7869 3.0324 34 1 7.8554 -4.3188 4.3520 35 1 8.5838 -4.8776 6.9630 36 1 5.0851 -7.5107 3.5001 37 1 3.7180 -5.9650 2.1924 38 1 5.2053 1.3666 -1.5415 39 1 3.6045 2.0949 -2.0971 40 1 3.5296 3.5261 -0.0039 41 1 5.1302 2.7975 0.5515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000848735688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:40 Heat of formation + Delta-G solvation = -158.200065 kcal Electronic energy + Delta-G solvation = -27305.185499 eV Core-core repulsion = 23116.483239 eV Total energy + Delta-G solvation = -4188.702260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.35984 -39.95845 -39.26423 -37.52597 -37.25505 -36.10352 -35.53327 -33.95781 -30.61599 -29.74828 -29.50732 -28.14661 -26.22069 -25.11911 -23.06544 -22.71437 -21.89189 -20.95463 -20.01523 -19.83689 -18.06289 -17.56850 -17.34630 -17.01386 -16.72283 -16.30159 -15.94344 -15.67913 -15.47113 -14.90762 -14.62794 -14.25550 -14.02149 -13.68729 -13.57312 -13.32309 -13.00517 -12.60535 -12.59215 -12.27790 -12.10134 -12.05348 -11.84613 -11.71272 -11.42897 -11.31619 -11.16006 -11.13395 -10.99566 -10.91950 -10.71931 -10.27712 -10.15571 -9.93256 -9.62590 -9.43971 -9.37919 -7.75769 -7.64855 -7.10325 -4.68459 1.34632 1.76445 2.03350 2.23512 2.82375 2.84749 2.92560 2.98081 3.03256 3.16789 3.60644 3.70242 3.85503 4.02899 4.20342 4.32148 4.45715 4.77346 4.82847 4.90933 5.06332 5.13059 5.24793 5.27259 5.39462 5.42642 5.51512 5.58766 5.88696 5.94679 6.21436 6.26200 6.73465 6.80439 6.94496 6.98224 7.08664 7.16299 7.29450 7.41480 7.66025 7.77687 7.83768 7.99886 8.35247 8.55817 8.68116 8.69475 9.80787 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002379 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.655252 B =11764.393015 C =12661.760564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.505 3.495 4 O -0.497 6.497 5 C -0.207 4.207 6 C 0.395 3.605 7 O -0.411 6.411 8 C 0.027 3.973 9 O -0.345 6.345 10 C 0.515 3.485 11 O -0.550 6.550 12 C -0.275 4.275 13 C -0.041 4.041 14 C -0.185 4.185 15 C 0.131 3.869 16 C -0.433 4.433 17 H 0.088 0.912 18 C 0.072 3.928 19 N -0.762 5.762 20 Si 0.915 3.085 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.240 4.240 25 C -0.017 4.017 26 C -0.116 4.116 27 C -0.113 4.113 28 H 0.108 0.892 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.289 0.711 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 11.492 -10.471 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.347 3.653 4 O -0.384 6.384 5 C -0.209 4.209 6 C 0.267 3.733 7 O -0.280 6.280 8 C -0.048 4.048 9 O -0.263 6.263 10 C 0.368 3.632 11 O -0.444 6.444 12 C -0.278 4.278 13 C -0.060 4.060 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.460 4.460 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.384 5.384 20 Si 0.738 3.262 21 H -0.180 1.180 22 H -0.192 1.192 23 H -0.196 1.196 24 C -0.259 4.259 25 C -0.035 4.035 26 C -0.153 4.153 27 C -0.150 4.150 28 H 0.127 0.873 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.139 0.861 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.534 11.996 -10.113 16.996 hybrid contribution -0.020 -0.366 0.313 0.482 sum -6.554 11.629 -9.800 16.560 Atomic orbital electron populations 1.23398 0.75284 1.04534 1.02673 1.86582 1.24201 1.32100 1.83531 1.21898 0.89056 0.81886 0.72415 1.90675 1.66163 1.36338 1.45225 1.21531 0.89659 1.00750 1.08987 1.23226 0.84494 0.88455 0.77119 1.90469 1.20918 1.82918 1.33710 1.23082 0.95264 0.88094 0.98326 1.86670 1.51153 1.22290 1.66208 1.21646 0.83803 0.79501 0.78244 1.90696 1.27058 1.77462 1.49191 1.18175 1.01738 0.92840 1.15015 1.20694 0.92954 0.98198 0.94192 1.21017 1.01764 0.94337 1.03290 1.17860 0.89095 0.92517 0.87733 1.19966 1.17734 0.95755 1.12553 0.89410 1.26173 0.97774 0.95390 0.95712 1.69748 1.32900 1.16481 1.19279 0.86131 0.80058 0.80918 0.79050 1.17964 1.19244 1.19568 1.20677 0.97943 0.98902 1.08387 1.20333 0.97169 0.91408 0.94615 1.23217 1.01851 1.00086 0.90191 1.23258 1.02628 0.89947 0.99179 0.87330 0.91562 0.91614 0.87805 0.87264 0.87844 0.86029 0.89989 0.88039 0.87915 0.86230 0.86623 0.86096 0.85764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.35 -3.78 7.46 -39.28 -0.29 -4.08 16 3 C 0.51 5.73 7.47 36.00 0.27 6.00 16 4 O -0.50 -6.35 16.01 -18.75 -0.30 -6.65 16 5 C -0.21 -2.19 2.53 -156.81 -0.40 -2.58 16 6 C 0.40 5.44 6.85 -29.04 -0.20 5.24 16 7 O -0.41 -6.81 16.40 -13.71 -0.22 -7.03 16 8 C 0.03 0.42 4.60 36.00 0.17 0.58 16 9 O -0.35 -6.89 8.98 -47.39 -0.43 -7.31 16 10 C 0.52 11.39 7.89 34.51 0.27 11.66 16 11 O -0.55 -12.45 16.11 -19.27 -0.31 -12.76 16 12 C -0.28 -6.51 5.89 -104.75 -0.62 -7.13 16 13 C -0.04 -0.99 9.55 -39.59 -0.38 -1.37 16 14 C -0.18 -4.65 8.63 -39.27 -0.34 -4.98 16 15 C 0.13 3.33 5.58 -106.80 -0.60 2.73 16 16 C -0.43 -10.59 9.04 -37.75 -0.34 -10.93 16 17 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 19 N -0.76 -18.18 10.95 55.56 0.61 -17.58 16 20 Si 0.92 16.97 29.60 -169.99 -5.03 11.94 16 21 H -0.26 -4.70 7.11 56.52 0.40 -4.30 16 22 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.27 -4.95 7.11 56.52 0.40 -4.54 16 24 C -0.24 -5.70 9.73 -39.27 -0.38 -6.09 16 25 C -0.02 -0.39 9.52 -39.59 -0.38 -0.76 16 26 C -0.12 -0.86 9.94 -26.73 -0.27 -1.12 16 27 C -0.11 -0.96 9.56 -26.73 -0.26 -1.22 16 28 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.11 1.62 6.42 -51.93 -0.33 1.28 16 33 H 0.10 2.34 7.59 -52.49 -0.40 1.94 16 34 H 0.12 3.09 6.16 -52.48 -0.32 2.77 16 35 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 38 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.12 0.95 7.67 -51.93 -0.40 0.55 16 41 H 0.12 1.05 7.67 -51.93 -0.40 0.66 16 LS Contribution 365.53 15.07 5.51 5.51 Total: -1.00 -30.40 365.53 -7.69 -38.09 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -4.76 Total: 6.94 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -2.46 Total: -7.07 kcal Atomic # 7 Polarization: -18.18 SS G_CDS: 0.61 Total: -17.58 kcal Atomic # 8 Polarization: -36.27 SS G_CDS: -1.55 Total: -37.83 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.40 -7.69 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848735688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.111 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds