Wall clock time and date at job start Tue Mar 31 2020 16:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34239 * 116.99790 * 2 1 4 4 O 1.20822 * 120.00012 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99895 * 180.02562 * 3 2 1 6 6 C 1.50705 * 115.54975 * 325.58616 * 5 3 2 7 7 O 1.20762 * 119.99315 * 214.33022 * 6 5 3 8 8 C 1.50693 * 120.00277 * 34.32655 * 6 5 3 9 9 O 1.45200 * 109.47169 * 180.02562 * 8 6 5 10 10 C 1.34775 * 116.99950 * 180.02562 * 9 8 6 11 11 O 1.21505 * 120.00131 * 0.02562 * 10 9 8 12 12 C 1.47508 * 120.00071 * 179.72035 * 10 9 8 13 13 C 1.40066 * 119.89924 * 0.02562 * 12 10 9 14 14 C 1.36306 * 120.10056 * 179.75324 * 13 12 10 15 15 C 1.40895 * 119.89553 * 0.54079 * 14 13 12 16 16 C 1.41091 * 120.09797 * 179.69407 * 15 14 13 17 17 H 1.08001 * 120.00385 * 204.66104 * 16 15 14 18 18 C 1.40249 * 119.99988 * 24.65675 * 16 15 14 19 19 N 1.30631 * 119.99887 * 17.87870 * 18 16 15 20 20 Si 1.86798 * 119.99967 * 197.87926 * 18 16 15 21 21 H 1.48495 * 109.47247 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47099 * 120.00351 * 20 18 16 23 23 H 1.48504 * 109.47190 * 239.99883 * 20 18 16 24 24 C 1.40898 * 119.80274 * 359.71376 * 15 14 13 25 25 C 1.36298 * 119.90137 * 359.97438 * 24 15 14 26 26 C 1.52998 * 117.52068 * 111.28415 * 5 3 2 27 27 C 1.52995 * 60.00261 * 107.48071 * 26 5 3 28 28 H 1.09001 * 109.46899 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46641 * 299.99230 * 1 2 3 30 30 H 1.08991 * 109.47254 * 59.99642 * 1 2 3 31 31 H 1.09006 * 109.47116 * 60.00261 * 8 6 5 32 32 H 1.09001 * 109.47449 * 300.00585 * 8 6 5 33 33 H 1.08002 * 119.94684 * 0.02562 * 13 12 10 34 34 H 1.08004 * 120.04604 * 180.25223 * 14 13 12 35 35 H 0.97002 * 120.00269 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.04752 * 179.97438 * 24 15 14 37 37 H 1.07994 * 119.95121 * 179.97438 * 25 24 15 38 38 H 1.08999 * 117.50350 * 214.97096 * 26 5 3 39 39 H 1.09006 * 117.49386 * 359.97438 * 26 5 3 40 40 H 1.08996 * 117.50146 * 252.51814 * 27 26 5 41 41 H 1.08995 * 117.49800 * 107.48754 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.2744 0.1887 0.7674 7 8 5.3028 0.4341 1.3509 8 6 3.6992 -1.2036 0.8071 9 8 4.5586 -2.0597 1.6050 10 6 4.1835 -3.3470 1.7411 11 8 3.1665 -3.7432 1.2072 12 6 5.0112 -4.2767 2.5326 13 6 6.1863 -3.8192 3.1423 14 6 6.9516 -4.6735 3.8788 15 6 6.5650 -6.0213 4.0168 16 6 7.3574 -6.9108 4.7729 17 1 7.3178 -7.9717 4.5741 18 6 8.1966 -6.4175 5.7824 19 7 8.0036 -5.2188 6.2644 20 14 9.5904 -7.4744 6.4378 21 1 9.5952 -8.7808 5.7319 22 1 10.8850 -6.7834 6.2101 23 1 9.3988 -7.6995 7.8932 24 6 5.3850 -6.4783 3.3973 25 6 4.6225 -5.6155 2.6680 26 6 4.2460 1.8041 -1.2651 27 6 4.2007 2.6673 -0.0026 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 3.6328 -1.5983 -0.2068 32 1 2.7041 -1.1731 1.2510 33 1 6.4841 -2.7869 3.0324 34 1 7.8554 -4.3188 4.3520 35 1 8.5838 -4.8776 6.9630 36 1 5.0851 -7.5107 3.5001 37 1 3.7180 -5.9650 2.1924 38 1 5.2053 1.3666 -1.5415 39 1 3.6045 2.0949 -2.0971 40 1 3.5296 3.5261 -0.0039 41 1 5.1302 2.7975 0.5515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000848735688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:39 Heat of formation + Delta-G solvation = -171.979653 kcal Electronic energy + Delta-G solvation = -27305.783027 eV Core-core repulsion = 23116.483239 eV Total energy + Delta-G solvation = -4189.299788 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.118 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.27727 -41.35631 -40.55560 -39.24676 -38.20812 -37.22794 -36.90302 -35.75472 -32.33999 -31.38059 -30.98859 -29.00333 -27.90511 -26.11032 -24.22766 -23.69303 -23.12406 -22.80786 -21.68823 -20.76849 -19.40778 -19.18199 -18.43067 -18.32534 -17.84517 -17.71544 -17.28677 -17.09467 -16.52207 -16.15810 -15.76455 -15.74365 -15.30954 -15.21166 -14.78487 -14.45891 -14.34872 -14.08246 -14.00479 -13.83438 -13.50692 -13.24760 -13.03864 -12.87226 -12.67877 -12.65270 -12.53474 -12.40215 -12.00578 -11.90955 -11.81929 -11.75123 -11.67993 -11.43870 -11.35506 -11.15061 -10.91100 -9.63913 -9.53708 -8.85368 -6.55607 0.22391 0.36780 0.84415 1.13586 1.35383 1.41178 1.42258 1.54836 1.56877 1.86621 2.14970 2.42117 2.65723 2.67315 3.22094 3.47491 3.59828 3.62364 3.77863 4.06558 4.12367 4.22966 4.25465 4.30601 4.36777 4.42430 4.47017 4.51582 4.70222 4.77103 4.92662 4.97946 4.98611 5.11490 5.15586 5.20678 5.31147 5.55723 5.80218 5.89844 5.96274 6.07276 6.14327 6.44987 6.49060 6.69776 6.81670 6.96497 8.09401 Molecular weight = 332.12amu Principal moments of inertia in cm(-1) A = 0.021672 B = 0.002379 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.655252 B =11764.393015 C =12661.760564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.509 3.491 4 O -0.514 6.514 5 C -0.223 4.223 6 C 0.406 3.594 7 O -0.445 6.445 8 C 0.018 3.982 9 O -0.356 6.356 10 C 0.521 3.479 11 O -0.558 6.558 12 C -0.292 4.292 13 C -0.041 4.041 14 C -0.203 4.203 15 C 0.105 3.895 16 C -0.456 4.456 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.791 5.791 20 Si 0.992 3.008 21 H -0.252 1.252 22 H -0.262 1.262 23 H -0.263 1.263 24 C -0.249 4.249 25 C -0.019 4.019 26 C -0.091 4.091 27 C -0.109 4.109 28 H 0.124 0.876 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.122 0.878 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.299 0.701 36 H 0.117 0.883 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.130 0.870 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 11.637 -11.240 17.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C 0.352 3.648 4 O -0.403 6.403 5 C -0.226 4.226 6 C 0.280 3.720 7 O -0.317 6.317 8 C -0.056 4.056 9 O -0.274 6.274 10 C 0.374 3.626 11 O -0.452 6.452 12 C -0.294 4.294 13 C -0.060 4.060 14 C -0.223 4.223 15 C 0.102 3.898 16 C -0.483 4.483 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.414 5.414 20 Si 0.811 3.189 21 H -0.175 1.175 22 H -0.187 1.187 23 H -0.187 1.187 24 C -0.268 4.268 25 C -0.037 4.037 26 C -0.128 4.128 27 C -0.145 4.145 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.149 0.851 39 H 0.156 0.844 40 H 0.148 0.852 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.440 12.154 -10.901 17.550 hybrid contribution -0.147 -0.338 0.522 0.639 sum -6.586 11.815 -10.379 17.050 Atomic orbital electron populations 1.23640 0.73866 1.05811 1.03230 1.86557 1.25714 1.31980 1.83290 1.21952 0.89191 0.81763 0.71861 1.90666 1.66509 1.36807 1.46302 1.21447 0.89119 1.00660 1.11341 1.23329 0.83868 0.88318 0.76446 1.90466 1.22536 1.83336 1.35393 1.23508 0.95025 0.88468 0.98595 1.86624 1.52200 1.21652 1.66887 1.21317 0.83321 0.80158 0.77847 1.90675 1.27203 1.77920 1.49450 1.18425 1.01977 0.93651 1.15383 1.20761 0.93051 0.98319 0.93901 1.21001 1.01989 0.94907 1.04355 1.18200 0.90040 0.92910 0.88687 1.20290 1.18670 0.96138 1.13158 0.88667 1.27080 0.99645 0.96568 0.95344 1.69778 1.33922 1.17981 1.19728 0.84999 0.76400 0.78999 0.78506 1.17482 1.18657 1.18723 1.20883 0.97675 0.99827 1.08443 1.20510 0.97509 0.91340 0.94366 1.23477 1.02060 0.97683 0.89594 1.23370 1.02326 0.88984 0.99852 0.85757 0.91634 0.90494 0.86060 0.86688 0.87267 0.87037 0.88936 0.86506 0.86519 0.85121 0.84375 0.85237 0.85934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.56 113.37 1.20 1.60 16 2 O -0.36 -7.35 7.46 -51.50 -0.38 -7.73 16 3 C 0.51 10.83 7.47 71.23 0.53 11.37 16 4 O -0.51 -12.42 16.01 21.98 0.35 -12.07 16 5 C -0.22 -4.38 2.53 -53.67 -0.14 -4.52 16 6 C 0.41 10.91 6.85 29.10 0.20 11.11 16 7 O -0.45 -14.74 16.40 17.39 0.29 -14.46 16 8 C 0.02 0.54 4.60 71.23 0.33 0.87 16 9 O -0.36 -14.20 8.98 -50.45 -0.45 -14.65 16 10 C 0.52 22.97 7.89 70.27 0.55 23.53 16 11 O -0.56 -24.85 16.11 19.82 0.32 -24.53 16 12 C -0.29 -13.94 5.89 -19.95 -0.12 -14.06 16 13 C -0.04 -2.03 9.55 22.26 0.21 -1.82 16 14 C -0.20 -10.50 8.63 22.47 0.19 -10.31 16 15 C 0.11 5.42 5.58 -21.28 -0.12 5.30 16 16 C -0.46 -22.44 9.04 23.46 0.21 -22.23 16 17 H 0.10 4.39 7.91 -2.91 -0.02 4.37 16 18 C 0.03 1.55 5.14 85.36 0.44 1.98 16 19 N -0.79 -38.04 10.95 21.88 0.24 -37.80 16 20 Si 0.99 34.00 29.60 68.60 2.03 36.03 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 23 H -0.26 -8.63 7.11 99.48 0.71 -7.93 16 24 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 25 C -0.02 -0.87 9.52 22.26 0.21 -0.66 16 26 C -0.09 -1.11 9.94 30.59 0.30 -0.80 16 27 C -0.11 -1.65 9.56 30.59 0.29 -1.36 16 28 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 30 H 0.08 0.96 8.13 -2.39 -0.02 0.94 16 31 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 32 H 0.12 3.33 6.42 -2.39 -0.02 3.32 16 33 H 0.11 5.07 7.59 -2.91 -0.02 5.05 16 34 H 0.11 5.88 6.16 -2.91 -0.02 5.86 16 35 H 0.30 12.74 8.29 -92.71 -0.77 11.97 16 36 H 0.12 5.08 8.06 -2.91 -0.02 5.06 16 37 H 0.12 5.03 7.63 -2.91 -0.02 5.01 16 38 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.14 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.13 1.77 7.67 -2.39 -0.02 1.75 16 41 H 0.12 1.93 7.67 -2.39 -0.02 1.91 16 Total: -1.00 -65.39 365.53 7.99 -57.40 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 1.07 Total: 29.54 kcal Atomic # 6 Polarization: -16.25 SS G_CDS: 4.52 Total: -11.73 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.24 Total: -37.80 kcal Atomic # 8 Polarization: -73.57 SS G_CDS: 0.12 Total: -73.45 kcal Atomic # 14 Polarization: 34.00 SS G_CDS: 2.03 Total: 36.03 kcal Total: -65.39 7.99 -57.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000848735688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.579 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds