Wall clock time and date at job start Tue Mar 31 2020 16:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35503 * 126.98125 * 2 1 4 4 C 1.50696 * 126.34416 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47358 * 89.99564 * 4 3 2 6 6 C 1.34778 * 120.00071 * 179.97438 * 5 4 3 7 7 O 1.21757 * 120.00045 * 359.97438 * 6 5 4 8 8 C 1.46235 * 119.99775 * 179.97438 * 6 5 4 9 9 S 1.75670 * 125.23053 * 0.08867 * 8 6 5 10 10 C 1.75478 * 92.09070 * 180.21709 * 9 8 6 11 11 C 1.32768 * 111.36353 * 359.82971 * 10 9 8 12 12 C 1.39550 * 125.22644 * 179.97438 * 8 6 5 13 13 C 1.40537 * 123.71490 * 0.02562 * 12 8 6 14 14 H 1.08000 * 119.99901 * 24.67111 * 13 12 8 15 15 C 1.40305 * 120.00340 * 204.66870 * 13 12 8 16 16 N 1.30640 * 120.00390 * 196.21639 * 15 13 12 17 17 Si 1.86805 * 119.99693 * 16.21791 * 15 13 12 18 18 H 1.48503 * 109.46972 * 263.39752 * 17 15 13 19 19 H 1.48503 * 109.47187 * 23.39460 * 17 15 13 20 20 H 1.48493 * 109.47195 * 143.39558 * 17 15 13 21 21 N 1.30517 * 107.30522 * 180.26491 * 3 2 1 22 22 N 1.28599 * 109.67482 * 359.56714 * 21 3 2 23 23 C 1.30517 * 109.67311 * 0.44702 * 22 21 3 24 24 C 1.50702 * 126.34917 * 179.73007 * 23 22 21 25 25 C 1.53000 * 117.49400 * 8.74253 * 24 23 22 26 26 C 1.53001 * 117.49649 * 300.09002 * 24 23 22 27 27 H 1.08999 * 109.47380 * 89.96563 * 1 2 3 28 28 H 1.09000 * 109.47129 * 209.96917 * 1 2 3 29 29 H 1.08999 * 109.47209 * 329.97127 * 1 2 3 30 30 H 1.09007 * 109.46930 * 329.99467 * 4 3 2 31 31 H 1.08997 * 109.47104 * 209.99783 * 4 3 2 32 32 H 0.97003 * 119.99625 * 359.97438 * 5 4 3 33 33 H 1.07997 * 124.31810 * 179.86635 * 10 9 8 34 34 H 1.07998 * 122.78165 * 180.02562 * 11 10 9 35 35 H 0.97003 * 119.99516 * 353.18343 * 16 15 13 36 36 H 1.08999 * 115.55087 * 154.41284 * 24 23 22 37 37 H 1.09002 * 117.50466 * 0.02562 * 25 24 23 38 38 H 1.09002 * 117.49133 * 145.01991 * 25 24 23 39 39 H 1.09001 * 117.49207 * 214.97991 * 26 24 23 40 40 H 1.09003 * 117.50040 * 359.96628 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 6 1.8477 2.5260 0.0005 5 7 1.7080 2.9935 1.3819 6 6 1.3283 4.2629 1.6286 7 8 1.1019 5.0214 0.7034 8 6 1.1883 4.7293 3.0075 9 16 1.4808 3.7567 4.4409 10 6 1.0733 5.0897 5.5069 11 6 0.7481 6.1774 4.8187 12 6 0.8039 6.0161 3.3869 13 6 0.4983 7.0399 2.4741 14 1 0.1648 6.7926 1.4770 15 6 0.6263 8.3834 2.8579 16 7 0.0562 9.3221 2.1504 17 14 1.6119 8.8298 4.3806 18 1 0.6925 8.9915 5.5356 19 1 2.5883 7.7496 4.6726 20 1 2.3385 10.1031 4.1443 21 7 3.5090 0.6430 -0.0058 22 7 3.5091 -0.6430 -0.0002 23 6 2.2801 -1.0824 -0.0002 24 6 1.8476 -2.5260 -0.0003 25 6 2.9300 -3.5876 0.2058 26 6 2.2967 -3.3978 -1.1747 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 0.8907 2.6188 -0.5130 31 1 2.5958 3.1296 -0.5133 32 1 1.8887 2.3893 2.1190 33 1 1.0861 5.0327 6.5853 34 1 0.4658 7.1062 5.2920 35 1 -0.3712 9.1023 1.3077 36 1 0.8631 -2.7219 0.4244 37 1 3.9547 -3.2419 0.3420 38 1 2.6573 -4.4821 0.7659 39 1 1.6076 -4.1675 -1.5224 40 1 2.9045 -2.9271 -1.9475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867244072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:10 Heat of formation + Delta-G solvation = 89.874815 kcal Electronic energy + Delta-G solvation = -25007.194006 eV Core-core repulsion = 21336.587453 eV Total energy + Delta-G solvation = -3670.606553 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28626 -38.52888 -37.51693 -36.39323 -35.28587 -34.06675 -33.41921 -30.84802 -29.21055 -27.97111 -27.23477 -25.46626 -24.32228 -22.75084 -21.92146 -21.13685 -20.50537 -20.37005 -19.25759 -18.13477 -17.31053 -16.71066 -16.36217 -15.95403 -15.32316 -14.96329 -14.78310 -14.65517 -14.35211 -13.66863 -13.64361 -13.56639 -13.27591 -13.11232 -12.51665 -12.36639 -12.33479 -11.94842 -11.90629 -11.64935 -11.54528 -11.34683 -11.26949 -10.95152 -10.88056 -10.39376 -10.31361 -10.13715 -10.03350 -9.67406 -9.35991 -9.15143 -8.58513 -8.52067 -7.86811 -7.61727 -7.31854 -4.68683 1.51368 1.83562 2.22937 2.63943 2.77494 2.94502 3.17137 3.31461 3.41255 3.49658 3.51817 3.79896 3.89727 3.98907 4.21595 4.28273 4.33633 4.48525 4.50626 4.61685 4.81309 4.95134 5.06753 5.10692 5.27517 5.38699 5.50701 5.63919 5.70464 5.76210 5.83833 5.90007 6.02030 6.06415 6.53952 6.65016 6.81293 6.95667 7.07503 7.27003 7.38334 8.04119 8.21673 8.40530 8.59850 8.64592 9.37073 9.70095 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.002755 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.189364 B =10161.427618 C =10733.374004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.464 5.464 3 C 0.167 3.833 4 C 0.218 3.782 5 N -0.748 5.748 6 C 0.603 3.397 7 O -0.558 6.558 8 C -0.432 4.432 9 S -0.024 6.024 10 C -0.173 4.173 11 C -0.162 4.162 12 C 0.113 3.887 13 C -0.423 4.423 14 H 0.110 0.890 15 C 0.035 3.965 16 N -0.781 5.781 17 Si 1.065 2.935 18 H -0.273 1.273 19 H -0.255 1.255 20 H -0.281 1.281 21 N -0.274 5.274 22 N -0.292 5.292 23 C 0.203 3.797 24 C -0.089 4.089 25 C -0.148 4.148 26 C -0.158 4.158 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.392 0.608 33 H 0.146 0.854 34 H 0.127 0.873 35 H 0.295 0.705 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.104 0.896 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.641 -18.842 -1.147 18.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.154 5.154 3 C -0.100 4.100 4 C 0.091 3.909 5 N -0.403 5.403 6 C 0.400 3.600 7 O -0.441 6.441 8 C -0.550 4.550 9 S 0.233 5.767 10 C -0.308 4.308 11 C -0.196 4.196 12 C 0.103 3.897 13 C -0.453 4.453 14 H 0.128 0.872 15 C -0.190 4.190 16 N -0.402 5.402 17 Si 0.890 3.110 18 H -0.199 1.199 19 H -0.180 1.180 20 H -0.208 1.208 21 N -0.114 5.114 22 N -0.133 5.133 23 C -0.063 4.063 24 C -0.109 4.109 25 C -0.186 4.186 26 C -0.196 4.196 27 H 0.103 0.897 28 H 0.110 0.890 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.225 0.775 33 H 0.164 0.836 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.484 -18.421 -0.739 18.442 hybrid contribution -2.468 -0.098 -0.812 2.600 sum -1.984 -18.519 -1.551 18.689 Atomic orbital electron populations 1.22186 0.75164 1.05649 1.04414 1.45908 1.09188 1.06171 1.54142 1.24880 0.87315 0.92109 1.05730 1.19264 1.01861 0.83033 0.86703 1.45845 1.74846 1.13913 1.05721 1.16752 0.75853 0.79479 0.87888 1.90695 1.53701 1.54285 1.45373 1.22352 1.40656 1.00208 0.91826 1.82878 1.77155 1.17292 0.99391 1.24941 1.06790 0.97452 1.01625 1.21432 1.04960 0.98505 0.94680 1.17915 0.89343 0.92347 0.90133 1.21031 1.31831 0.90814 1.01628 0.87240 1.27666 0.94187 0.92658 1.04456 1.70408 1.20080 1.37784 1.11904 0.83785 0.77236 0.76960 0.73008 1.19935 1.17959 1.20774 1.74324 1.16986 1.02780 1.17352 1.74218 1.16824 1.03224 1.18996 1.23714 0.87374 0.90511 1.04727 1.20080 1.00513 0.83410 1.06927 1.23040 0.98511 0.98183 0.98830 1.23084 1.03438 1.01095 0.91991 0.89661 0.88974 0.88396 0.90359 0.88484 0.77462 0.83649 0.85591 0.89246 0.85923 0.87088 0.87789 0.87808 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.55 10.71 59.85 0.64 1.19 16 2 N -0.46 -5.69 3.15 -118.00 -0.37 -6.06 16 3 C 0.17 2.56 7.40 -154.98 -1.15 1.41 16 4 C 0.22 3.55 5.84 -5.20 -0.03 3.52 16 5 N -0.75 -14.14 5.54 -62.94 -0.35 -14.49 16 6 C 0.60 14.19 7.76 -13.05 -0.10 14.09 16 7 O -0.56 -14.82 14.47 5.14 0.07 -14.74 16 8 C -0.43 -10.39 6.51 -35.88 -0.23 -10.62 16 9 S -0.02 -0.48 22.25 -107.50 -2.39 -2.87 16 10 C -0.17 -3.38 11.07 28.86 0.32 -3.06 16 11 C -0.16 -3.57 7.40 -39.12 -0.29 -3.86 16 12 C 0.11 2.86 5.28 -106.21 -0.56 2.30 16 13 C -0.42 -11.33 8.87 -37.94 -0.34 -11.67 16 14 H 0.11 3.22 6.28 -52.49 -0.33 2.89 16 15 C 0.03 0.87 5.49 -17.28 -0.09 0.77 16 16 N -0.78 -19.99 13.64 55.57 0.76 -19.24 16 17 Si 1.07 22.38 24.87 -169.99 -4.23 18.15 16 18 H -0.27 -5.22 6.79 56.52 0.38 -4.84 16 19 H -0.26 -5.37 6.48 56.52 0.37 -5.00 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 N -0.27 -4.83 12.21 32.80 0.40 -4.43 16 22 N -0.29 -4.69 11.83 32.80 0.39 -4.31 16 23 C 0.20 2.58 7.55 -154.98 -1.17 1.41 16 24 C -0.09 -0.75 5.97 -91.77 -0.55 -1.30 16 25 C -0.15 -1.11 10.15 -26.70 -0.27 -1.38 16 26 C -0.16 -1.11 10.24 -26.70 -0.27 -1.38 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.51 7.38 -51.93 -0.38 0.12 16 29 H 0.10 0.86 7.81 -51.93 -0.41 0.45 16 30 H 0.08 1.17 7.86 -51.93 -0.41 0.76 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.39 7.10 7.54 -40.82 -0.31 6.80 16 33 H 0.15 2.27 8.06 -52.49 -0.42 1.85 16 34 H 0.13 2.58 4.55 -52.49 -0.24 2.34 16 35 H 0.30 7.45 8.73 -40.82 -0.36 7.10 16 36 H 0.12 0.74 7.49 -51.93 -0.39 0.35 16 37 H 0.11 1.03 7.92 -51.93 -0.41 0.62 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 352.90 15.07 5.32 5.32 Total: -1.00 -32.05 352.90 -9.11 -41.16 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -4.61 Total: 10.07 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -4.10 Total: -8.58 kcal Atomic # 7 Polarization: -49.34 SS G_CDS: 0.83 Total: -48.52 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: 0.07 Total: -14.74 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.23 Total: 18.15 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.39 Total: -2.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.05 -9.11 -41.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867244072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.037 kcal (2) G-P(sol) polarization free energy of solvation -32.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds