Wall clock time and date at job start Tue Mar 31 2020 16:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35503 * 126.98125 * 2 1 4 4 C 1.50696 * 126.34416 * 0.02562 * 3 2 1 5 5 N 1.46499 * 109.47358 * 89.99564 * 4 3 2 6 6 C 1.34778 * 120.00071 * 179.97438 * 5 4 3 7 7 O 1.21757 * 120.00045 * 359.97438 * 6 5 4 8 8 C 1.46235 * 119.99775 * 179.97438 * 6 5 4 9 9 S 1.75670 * 125.23053 * 0.08867 * 8 6 5 10 10 C 1.75478 * 92.09070 * 180.21709 * 9 8 6 11 11 C 1.32768 * 111.36353 * 359.82971 * 10 9 8 12 12 C 1.39550 * 125.22644 * 179.97438 * 8 6 5 13 13 C 1.40537 * 123.71490 * 0.02562 * 12 8 6 14 14 H 1.08000 * 119.99901 * 24.67111 * 13 12 8 15 15 C 1.40305 * 120.00340 * 204.66870 * 13 12 8 16 16 N 1.30640 * 120.00390 * 196.21639 * 15 13 12 17 17 Si 1.86805 * 119.99693 * 16.21791 * 15 13 12 18 18 H 1.48503 * 109.46972 * 263.39752 * 17 15 13 19 19 H 1.48503 * 109.47187 * 23.39460 * 17 15 13 20 20 H 1.48493 * 109.47195 * 143.39558 * 17 15 13 21 21 N 1.30517 * 107.30522 * 180.26491 * 3 2 1 22 22 N 1.28599 * 109.67482 * 359.56714 * 21 3 2 23 23 C 1.30517 * 109.67311 * 0.44702 * 22 21 3 24 24 C 1.50702 * 126.34917 * 179.73007 * 23 22 21 25 25 C 1.53000 * 117.49400 * 8.74253 * 24 23 22 26 26 C 1.53001 * 117.49649 * 300.09002 * 24 23 22 27 27 H 1.08999 * 109.47380 * 89.96563 * 1 2 3 28 28 H 1.09000 * 109.47129 * 209.96917 * 1 2 3 29 29 H 1.08999 * 109.47209 * 329.97127 * 1 2 3 30 30 H 1.09007 * 109.46930 * 329.99467 * 4 3 2 31 31 H 1.08997 * 109.47104 * 209.99783 * 4 3 2 32 32 H 0.97003 * 119.99625 * 359.97438 * 5 4 3 33 33 H 1.07997 * 124.31810 * 179.86635 * 10 9 8 34 34 H 1.07998 * 122.78165 * 180.02562 * 11 10 9 35 35 H 0.97003 * 119.99516 * 353.18343 * 16 15 13 36 36 H 1.08999 * 115.55087 * 154.41284 * 24 23 22 37 37 H 1.09002 * 117.50466 * 0.02562 * 25 24 23 38 38 H 1.09002 * 117.49133 * 145.01991 * 25 24 23 39 39 H 1.09001 * 117.49207 * 214.97991 * 26 24 23 40 40 H 1.09003 * 117.50040 * 359.96628 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2801 1.0824 0.0000 4 6 1.8477 2.5260 0.0005 5 7 1.7080 2.9935 1.3819 6 6 1.3283 4.2629 1.6286 7 8 1.1019 5.0214 0.7034 8 6 1.1883 4.7293 3.0075 9 16 1.4808 3.7567 4.4409 10 6 1.0733 5.0897 5.5069 11 6 0.7481 6.1774 4.8187 12 6 0.8039 6.0161 3.3869 13 6 0.4983 7.0399 2.4741 14 1 0.1648 6.7926 1.4770 15 6 0.6263 8.3834 2.8579 16 7 0.0562 9.3221 2.1504 17 14 1.6119 8.8298 4.3806 18 1 0.6925 8.9915 5.5356 19 1 2.5883 7.7496 4.6726 20 1 2.3385 10.1031 4.1443 21 7 3.5090 0.6430 -0.0058 22 7 3.5091 -0.6430 -0.0002 23 6 2.2801 -1.0824 -0.0002 24 6 1.8476 -2.5260 -0.0003 25 6 2.9300 -3.5876 0.2058 26 6 2.2967 -3.3978 -1.1747 27 1 -0.3634 0.0006 -1.0276 28 1 -0.3633 -0.8903 0.5134 29 1 -0.3633 0.8897 0.5143 30 1 0.8907 2.6188 -0.5130 31 1 2.5958 3.1296 -0.5133 32 1 1.8887 2.3893 2.1190 33 1 1.0861 5.0327 6.5853 34 1 0.4658 7.1062 5.2920 35 1 -0.3712 9.1023 1.3077 36 1 0.8631 -2.7219 0.4244 37 1 3.9547 -3.2419 0.3420 38 1 2.6573 -4.4821 0.7659 39 1 1.6076 -4.1675 -1.5224 40 1 2.9045 -2.9271 -1.9475 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867244072.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:09 Heat of formation + Delta-G solvation = 68.784680 kcal Electronic energy + Delta-G solvation = -25008.108543 eV Core-core repulsion = 21336.587453 eV Total energy + Delta-G solvation = -3671.521089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.37541 -40.35175 -38.24799 -38.06930 -36.40529 -35.60765 -35.25523 -32.19074 -30.91034 -29.08343 -28.54997 -27.04453 -25.20590 -23.64501 -23.29993 -22.48787 -22.04598 -21.25740 -21.09239 -19.78747 -18.35240 -18.20567 -17.59406 -16.95959 -16.69332 -16.48422 -16.41432 -15.95211 -15.53066 -15.28790 -15.01269 -14.71717 -14.44999 -14.24581 -14.16729 -13.85701 -13.72445 -13.36755 -13.10937 -12.92080 -12.75017 -12.61027 -12.38594 -12.10089 -11.90875 -11.75290 -11.63185 -11.39728 -11.37786 -11.25413 -11.09396 -10.63804 -10.22423 -10.08762 -9.73290 -9.39841 -9.09623 -6.62292 0.08758 0.45037 1.15071 1.27734 1.28385 1.49274 1.50128 1.56872 1.67899 1.79294 2.11594 2.40425 2.46206 2.87161 2.96792 3.13847 3.20863 3.56415 3.69059 3.90235 3.97392 4.04216 4.16386 4.23679 4.26600 4.46516 4.52049 4.54938 4.77374 4.78380 4.82162 4.87558 4.95810 5.13876 5.14504 5.23073 5.27197 5.34334 5.38305 5.52314 5.70930 6.14631 6.26576 6.55335 6.75687 7.51836 7.52201 7.76398 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.023520 B = 0.002755 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.189364 B =10161.427618 C =10733.374004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.457 5.457 3 C 0.158 3.842 4 C 0.224 3.776 5 N -0.730 5.730 6 C 0.596 3.404 7 O -0.597 6.597 8 C -0.461 4.461 9 S 0.034 5.966 10 C -0.149 4.149 11 C -0.195 4.195 12 C 0.102 3.898 13 C -0.467 4.467 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.806 5.806 17 Si 1.099 2.901 18 H -0.234 1.234 19 H -0.254 1.254 20 H -0.278 1.278 21 N -0.312 5.312 22 N -0.331 5.331 23 C 0.217 3.783 24 C -0.100 4.100 25 C -0.148 4.148 26 C -0.145 4.145 27 H 0.105 0.895 28 H 0.126 0.874 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.398 0.602 33 H 0.198 0.802 34 H 0.143 0.857 35 H 0.283 0.717 36 H 0.157 0.843 37 H 0.086 0.914 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.268 -22.123 1.615 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 N -0.147 5.147 3 C -0.111 4.111 4 C 0.098 3.902 5 N -0.384 5.384 6 C 0.393 3.607 7 O -0.482 6.482 8 C -0.579 4.579 9 S 0.292 5.708 10 C -0.284 4.284 11 C -0.227 4.227 12 C 0.091 3.909 13 C -0.498 4.498 14 H 0.081 0.919 15 C -0.213 4.213 16 N -0.428 5.428 17 Si 0.917 3.083 18 H -0.159 1.159 19 H -0.178 1.178 20 H -0.205 1.205 21 N -0.153 5.153 22 N -0.172 5.172 23 C -0.050 4.050 24 C -0.120 4.120 25 C -0.186 4.186 26 C -0.183 4.183 27 H 0.124 0.876 28 H 0.144 0.856 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.233 0.767 33 H 0.215 0.785 34 H 0.160 0.840 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.104 0.896 38 H 0.151 0.849 39 H 0.154 0.846 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.169 -21.760 2.014 21.854 hybrid contribution -2.229 0.559 -1.740 2.882 sum -2.398 -21.201 0.274 21.338 Atomic orbital electron populations 1.22570 0.72495 1.06897 1.06210 1.46086 1.10611 1.05008 1.52968 1.24426 0.87552 0.92085 1.07023 1.19185 1.02139 0.83838 0.85011 1.45598 1.73148 1.12470 1.07206 1.16987 0.75573 0.80407 0.87746 1.90684 1.55190 1.55731 1.46607 1.22926 1.39467 1.01421 0.94101 1.82621 1.75728 1.16009 0.96473 1.25571 1.03039 0.95771 1.04008 1.21424 1.07915 1.00526 0.92861 1.18299 0.88263 0.92235 0.92101 1.20819 1.35819 0.92694 1.00467 0.91887 1.28895 0.93851 0.91947 1.06569 1.70489 1.22177 1.37941 1.12188 0.83436 0.76739 0.76707 0.71431 1.15879 1.17844 1.20454 1.74219 1.18557 1.03995 1.18531 1.74141 1.19099 1.02631 1.21287 1.24513 0.86508 0.92242 1.01736 1.20475 1.02214 0.80753 1.08607 1.23106 0.97073 0.98660 0.99741 1.23148 1.03244 1.00800 0.91086 0.87640 0.85583 0.89309 0.88941 0.90073 0.76704 0.78545 0.84011 0.90632 0.82534 0.89585 0.84931 0.84598 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.71 127.77 1.37 2.16 16 2 N -0.46 -10.53 3.15 -527.25 -1.66 -12.19 16 3 C 0.16 4.85 7.40 137.98 1.02 5.87 16 4 C 0.22 7.50 5.84 85.63 0.50 8.00 16 5 N -0.73 -27.91 5.54 -471.22 -2.61 -30.52 16 6 C 0.60 28.90 7.76 86.32 0.67 29.57 16 7 O -0.60 -33.65 14.47 -4.53 -0.07 -33.71 16 8 C -0.46 -22.18 6.51 24.67 0.16 -22.02 16 9 S 0.03 1.26 22.25 -56.49 -1.26 0.00 16 10 C -0.15 -5.16 11.07 66.64 0.74 -4.42 16 11 C -0.19 -8.10 7.40 22.60 0.17 -7.93 16 12 C 0.10 5.21 5.28 -20.89 -0.11 5.10 16 13 C -0.47 -26.48 8.87 23.33 0.21 -26.27 16 14 H 0.06 4.06 6.28 -2.91 -0.02 4.04 16 15 C 0.01 0.28 5.49 85.37 0.47 0.75 16 16 N -0.81 -43.58 13.64 21.89 0.30 -43.29 16 17 Si 1.10 44.53 24.87 68.60 1.71 46.24 16 18 H -0.23 -8.04 6.79 99.48 0.68 -7.37 16 19 H -0.25 -10.15 6.48 99.48 0.64 -9.50 16 20 H -0.28 -11.00 7.11 99.48 0.71 -10.29 16 21 N -0.31 -11.23 12.21 -50.15 -0.61 -11.84 16 22 N -0.33 -10.69 11.83 -50.15 -0.59 -11.28 16 23 C 0.22 5.18 7.55 137.98 1.04 6.23 16 24 C -0.10 -1.37 5.97 -11.54 -0.07 -1.44 16 25 C -0.15 -1.85 10.15 30.62 0.31 -1.54 16 26 C -0.14 -1.60 10.24 30.62 0.31 -1.29 16 27 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.13 0.84 7.38 -2.39 -0.02 0.82 16 29 H 0.09 1.39 7.81 -2.39 -0.02 1.37 16 30 H 0.09 2.82 7.86 -2.38 -0.02 2.80 16 31 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 32 H 0.40 14.18 7.54 -92.71 -0.70 13.48 16 33 H 0.20 4.79 8.06 -2.91 -0.02 4.77 16 34 H 0.14 5.40 4.55 -2.91 -0.01 5.38 16 35 H 0.28 15.49 8.73 -92.71 -0.81 14.68 16 36 H 0.16 1.08 7.49 -2.39 -0.02 1.07 16 37 H 0.09 1.54 7.92 -2.39 -0.02 1.52 16 38 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -76.58 352.90 2.27 -74.31 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: 0.28 Total: 29.51 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 6.79 Total: -7.23 kcal Atomic # 7 Polarization: -103.94 SS G_CDS: -5.18 Total: -109.12 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.07 Total: -33.71 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.71 Total: 46.24 kcal Atomic # 16 Polarization: 1.26 SS G_CDS: -1.26 Total: 0.00 kcal Total: -76.58 2.27 -74.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867244072.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.099 kcal (2) G-P(sol) polarization free energy of solvation -76.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds