Wall clock time and date at job start Tue Mar 31 2020 16:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29115 * 126.00935 * 2 1 4 4 N 1.29021 * 110.25842 * 179.90657 * 3 2 1 5 5 C 1.32906 * 108.63410 * 359.97438 * 4 3 2 6 6 C 1.34395 * 126.00421 * 179.68467 * 2 1 3 7 7 C 1.50534 * 129.25661 * 0.88582 * 6 2 1 8 8 C 1.53432 * 108.38711 * 163.09280 * 7 6 2 9 9 C 1.53113 * 109.54909 * 49.50900 * 8 7 6 10 10 H 1.09007 * 109.45272 * 49.95365 * 9 8 7 11 11 N 1.46500 * 109.45507 * 169.89240 * 9 8 7 12 12 C 1.34778 * 119.99949 * 205.10847 * 11 9 8 13 13 O 1.21764 * 119.99726 * 0.02562 * 12 11 9 14 14 C 1.46235 * 119.99832 * 180.02562 * 12 11 9 15 15 S 1.75662 * 125.22668 * 359.69459 * 14 12 11 16 16 C 1.75479 * 92.08903 * 179.91784 * 15 14 12 17 17 C 1.32764 * 111.36387 * 0.35783 * 16 15 14 18 18 C 1.39548 * 125.22502 * 179.97438 * 14 12 11 19 19 C 1.40532 * 123.71738 * 359.96334 * 18 14 12 20 20 H 1.07999 * 120.00063 * 23.52879 * 19 18 14 21 21 C 1.40310 * 119.99905 * 203.52403 * 19 18 14 22 22 N 1.30633 * 120.00210 * 9.83393 * 21 19 18 23 23 Si 1.86807 * 119.99980 * 189.83350 * 21 19 18 24 24 H 1.48498 * 109.46860 * 90.00178 * 23 21 19 25 25 H 1.48496 * 109.46998 * 210.00297 * 23 21 19 26 26 H 1.48504 * 109.47036 * 330.00328 * 23 21 19 27 27 C 1.50599 * 129.15880 * 180.18696 * 5 4 3 28 28 H 1.09003 * 109.46637 * 90.02765 * 1 2 3 29 29 H 1.09004 * 109.47124 * 330.03017 * 1 2 3 30 30 H 1.08998 * 109.47281 * 210.03066 * 1 2 3 31 31 H 1.08999 * 109.83244 * 43.26264 * 7 6 2 32 32 H 1.09003 * 109.49459 * 282.72547 * 7 6 2 33 33 H 1.08999 * 109.45874 * 289.48450 * 8 7 6 34 34 H 1.08995 * 109.44891 * 169.52292 * 8 7 6 35 35 H 0.96991 * 119.99712 * 25.10715 * 11 9 8 36 36 H 1.08001 * 124.31796 * 180.02562 * 16 15 14 37 37 H 1.07997 * 122.78492 * 179.73344 * 17 16 15 38 38 H 0.97003 * 120.00497 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.68840 * 283.16529 * 27 5 4 40 40 H 1.08996 * 109.69589 * 43.70613 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4659 0.6942 0.0020 5 6 3.5327 -0.6332 0.0039 6 6 2.2550 -1.0872 0.0060 7 6 1.8722 -2.5430 -0.0040 8 6 3.1015 -3.3639 -0.4151 9 6 4.3081 -2.9348 0.4242 10 1 4.0348 -2.9348 1.4794 11 7 5.4122 -3.8728 0.2066 12 6 6.3596 -4.0296 1.1523 13 8 6.2975 -3.3919 2.1878 14 6 7.4620 -4.9655 0.9349 15 16 7.6815 -5.9570 -0.4984 16 6 9.1544 -6.6662 0.1394 17 6 9.4394 -6.1872 1.3444 18 6 8.4981 -5.2121 1.8365 19 6 8.6119 -4.5796 3.0862 20 1 7.7353 -4.1696 3.5657 21 6 9.8642 -4.4807 3.7111 22 7 10.9483 -4.7997 3.0556 23 14 9.9815 -3.8930 5.4804 24 1 9.8940 -5.0588 6.3960 25 1 11.2776 -3.1981 5.6862 26 1 8.8661 -2.9549 5.7654 27 6 4.7468 -1.5242 0.0104 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3634 -0.8897 0.5143 31 1 1.0648 -2.7082 -0.7175 32 1 1.5482 -2.8408 0.9932 33 1 3.3147 -3.1948 -1.4705 34 1 2.9026 -4.4228 -0.2500 35 1 5.4614 -4.3810 -0.6181 36 1 9.7500 -7.4027 -0.3795 37 1 10.3048 -6.5015 1.9090 38 1 11.8142 -4.7310 3.4874 39 1 5.1856 -1.5543 -0.9870 40 1 5.4787 -1.1426 0.7223 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869195305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:17 Heat of formation + Delta-G solvation = 75.253256 kcal Electronic energy + Delta-G solvation = -25419.764321 eV Core-core repulsion = 21748.523730 eV Total energy + Delta-G solvation = -3671.240591 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.40205 -38.82902 -36.89809 -35.77116 -34.99995 -33.05723 -32.94719 -30.34848 -29.54175 -28.70287 -27.90774 -26.10241 -24.10223 -22.77329 -21.82010 -21.40435 -19.99057 -19.74031 -18.74571 -17.54140 -17.11264 -16.86346 -15.90710 -15.48786 -15.21065 -14.62062 -14.38254 -14.13154 -13.87460 -13.80087 -13.67497 -13.42412 -13.14290 -12.85565 -12.46295 -12.36830 -12.13490 -11.98083 -11.71830 -11.58321 -11.43338 -11.30181 -11.09571 -11.00874 -10.78970 -10.48543 -10.41694 -10.13176 -9.96511 -9.63791 -9.25689 -8.84002 -8.46319 -8.29196 -7.49171 -7.13887 -7.04252 -4.52780 1.50619 2.15892 2.23406 2.59016 2.97114 3.00773 3.09285 3.12789 3.64097 3.79754 3.86303 3.88863 4.12023 4.30344 4.43639 4.62887 4.68037 4.74960 4.86300 4.91437 5.13744 5.21260 5.27969 5.40304 5.46122 5.63569 5.70568 5.84867 6.03449 6.03978 6.15457 6.26893 6.45785 6.52381 6.69840 6.84426 7.16923 7.20226 7.29733 7.47785 7.70785 8.36351 8.44638 8.51413 8.60484 8.78120 9.58826 9.86638 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.003210 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.790004 B = 8719.665919 C =10041.224754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.288 5.288 3 N -0.102 5.102 4 N -0.260 5.260 5 C -0.001 4.001 6 C -0.027 4.027 7 C -0.037 4.037 8 C -0.123 4.123 9 C 0.157 3.843 10 H 0.088 0.912 11 N -0.745 5.745 12 C 0.601 3.399 13 O -0.561 6.561 14 C -0.430 4.430 15 S -0.053 6.053 16 C -0.206 4.206 17 C -0.099 4.099 18 C 0.140 3.860 19 C -0.376 4.376 20 H 0.112 0.888 21 C 0.068 3.932 22 N -0.777 5.777 23 Si 0.923 3.077 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.253 1.253 27 C -0.047 4.047 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.391 0.609 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.288 0.712 39 H 0.083 0.917 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.562 0.480 -5.763 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.081 5.081 3 N -0.080 5.080 4 N -0.125 5.125 5 C -0.141 4.141 6 C -0.160 4.160 7 C -0.076 4.076 8 C -0.161 4.161 9 C 0.051 3.949 10 H 0.106 0.894 11 N -0.397 5.397 12 C 0.398 3.602 13 O -0.443 6.443 14 C -0.549 4.549 15 S 0.202 5.798 16 C -0.339 4.339 17 C -0.131 4.131 18 C 0.129 3.871 19 C -0.407 4.407 20 H 0.130 0.870 21 C -0.154 4.154 22 N -0.401 5.401 23 Si 0.747 3.253 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.177 1.177 27 C -0.088 4.088 28 H 0.108 0.892 29 H 0.119 0.881 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.224 0.776 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.135 2.329 -6.325 17.486 hybrid contribution 0.867 -0.865 1.380 1.845 sum -15.267 1.464 -4.945 16.115 Atomic orbital electron populations 1.22213 0.73123 1.05799 1.04781 1.46800 1.08944 1.04766 1.47584 1.78565 0.96267 1.11366 1.21799 1.74824 1.09266 1.12237 1.16149 1.21725 0.94968 0.91201 1.06243 1.21866 0.91276 0.92249 1.10645 1.20089 0.98825 0.85771 1.02963 1.21859 0.93421 1.00164 1.00700 1.20654 0.86198 0.87592 1.00482 0.89369 1.45838 1.26747 1.45392 1.21762 1.16856 0.80223 0.80939 0.82133 1.90671 1.76670 1.49423 1.27582 1.22554 1.11414 1.19898 1.00997 1.82666 1.25586 1.46117 1.25435 1.24938 1.01540 1.06799 1.00673 1.21740 0.99994 0.96448 0.94954 1.17927 0.88120 0.89340 0.91679 1.20059 0.94875 1.25776 0.99963 0.87014 1.26380 0.95205 0.92887 1.00966 1.69666 0.99672 1.32832 1.37972 0.86023 0.79120 0.79972 0.80233 1.18934 1.19942 1.17669 1.20462 0.92734 0.92168 1.03401 0.89204 0.88104 0.88433 0.89927 0.89454 0.90818 0.89636 0.77568 0.84543 0.83762 0.90075 0.89892 0.88865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.27 59.85 0.67 1.13 16 2 N -0.29 -3.37 3.73 -64.00 -0.24 -3.61 16 3 N -0.10 -1.58 13.19 60.35 0.80 -0.79 16 4 N -0.26 -4.61 12.40 33.16 0.41 -4.20 16 5 C 0.00 -0.01 7.11 -83.12 -0.59 -0.60 16 6 C -0.03 -0.33 6.76 -82.50 -0.56 -0.89 16 7 C -0.04 -0.32 5.94 -27.74 -0.16 -0.49 16 8 C -0.12 -1.29 5.37 -26.45 -0.14 -1.43 16 9 C 0.16 2.40 2.42 -67.66 -0.16 2.23 16 10 H 0.09 1.52 7.55 -51.93 -0.39 1.13 16 11 N -0.75 -13.43 5.07 -54.98 -0.28 -13.71 16 12 C 0.60 14.14 7.73 -13.05 -0.10 14.03 16 13 O -0.56 -14.88 14.11 5.13 0.07 -14.81 16 14 C -0.43 -10.57 6.51 -35.88 -0.23 -10.81 16 15 S -0.05 -1.09 22.25 -107.50 -2.39 -3.48 16 16 C -0.21 -4.39 11.07 28.86 0.32 -4.07 16 17 C -0.10 -2.38 9.04 -39.12 -0.35 -2.73 16 18 C 0.14 3.69 5.68 -106.21 -0.60 3.09 16 19 C -0.38 -10.04 8.51 -37.94 -0.32 -10.36 16 20 H 0.11 3.13 6.04 -52.49 -0.32 2.81 16 21 C 0.07 1.64 5.39 -17.28 -0.09 1.54 16 22 N -0.78 -18.72 10.81 55.57 0.60 -18.12 16 23 Si 0.92 18.54 29.57 -169.99 -5.03 13.52 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 26 H -0.25 -5.29 7.11 56.52 0.40 -4.89 16 27 C -0.05 -0.76 5.88 -27.72 -0.16 -0.93 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.31 7.96 -51.93 -0.41 -0.10 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 34 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.39 6.35 7.68 -40.82 -0.31 6.04 16 36 H 0.14 2.46 8.06 -52.49 -0.42 2.04 16 37 H 0.15 3.45 6.40 -52.49 -0.34 3.11 16 38 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 39 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 40 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 LS Contribution 348.24 15.07 5.25 5.25 Total: -1.00 -32.60 348.24 -8.01 -40.62 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -4.71 Total: 9.60 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.50 Total: -10.28 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 1.29 Total: -40.42 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: 0.07 Total: -14.81 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.39 Total: -3.48 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.60 -8.01 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869195305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.870 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds