Wall clock time and date at job start Tue Mar 31 2020 16:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.29115 * 126.00935 * 2 1 4 4 N 1.29021 * 110.25842 * 179.90657 * 3 2 1 5 5 C 1.32906 * 108.63410 * 359.97438 * 4 3 2 6 6 C 1.34395 * 126.00421 * 179.68467 * 2 1 3 7 7 C 1.50534 * 129.25661 * 0.88582 * 6 2 1 8 8 C 1.53432 * 108.38711 * 163.09280 * 7 6 2 9 9 C 1.53113 * 109.54909 * 49.50900 * 8 7 6 10 10 H 1.09007 * 109.45272 * 49.95365 * 9 8 7 11 11 N 1.46500 * 109.45507 * 169.89240 * 9 8 7 12 12 C 1.34778 * 119.99949 * 205.10847 * 11 9 8 13 13 O 1.21764 * 119.99726 * 0.02562 * 12 11 9 14 14 C 1.46235 * 119.99832 * 180.02562 * 12 11 9 15 15 S 1.75662 * 125.22668 * 359.69459 * 14 12 11 16 16 C 1.75479 * 92.08903 * 179.91784 * 15 14 12 17 17 C 1.32764 * 111.36387 * 0.35783 * 16 15 14 18 18 C 1.39548 * 125.22502 * 179.97438 * 14 12 11 19 19 C 1.40532 * 123.71738 * 359.96334 * 18 14 12 20 20 H 1.07999 * 120.00063 * 23.52879 * 19 18 14 21 21 C 1.40310 * 119.99905 * 203.52403 * 19 18 14 22 22 N 1.30633 * 120.00210 * 9.83393 * 21 19 18 23 23 Si 1.86807 * 119.99980 * 189.83350 * 21 19 18 24 24 H 1.48498 * 109.46860 * 90.00178 * 23 21 19 25 25 H 1.48496 * 109.46998 * 210.00297 * 23 21 19 26 26 H 1.48504 * 109.47036 * 330.00328 * 23 21 19 27 27 C 1.50599 * 129.15880 * 180.18696 * 5 4 3 28 28 H 1.09003 * 109.46637 * 90.02765 * 1 2 3 29 29 H 1.09004 * 109.47124 * 330.03017 * 1 2 3 30 30 H 1.08998 * 109.47281 * 210.03066 * 1 2 3 31 31 H 1.08999 * 109.83244 * 43.26264 * 7 6 2 32 32 H 1.09003 * 109.49459 * 282.72547 * 7 6 2 33 33 H 1.08999 * 109.45874 * 289.48450 * 8 7 6 34 34 H 1.08995 * 109.44891 * 169.52292 * 8 7 6 35 35 H 0.96991 * 119.99712 * 25.10715 * 11 9 8 36 36 H 1.08001 * 124.31796 * 180.02562 * 16 15 14 37 37 H 1.07997 * 122.78492 * 179.73344 * 17 16 15 38 38 H 0.97003 * 120.00497 * 179.97438 * 22 21 19 39 39 H 1.09007 * 109.68840 * 283.16529 * 27 5 4 40 40 H 1.08996 * 109.69589 * 43.70613 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2241 1.0444 0.0000 4 7 3.4659 0.6942 0.0020 5 6 3.5327 -0.6332 0.0039 6 6 2.2550 -1.0872 0.0060 7 6 1.8722 -2.5430 -0.0040 8 6 3.1015 -3.3639 -0.4151 9 6 4.3081 -2.9348 0.4242 10 1 4.0348 -2.9348 1.4794 11 7 5.4122 -3.8728 0.2066 12 6 6.3596 -4.0296 1.1523 13 8 6.2975 -3.3919 2.1878 14 6 7.4620 -4.9655 0.9349 15 16 7.6815 -5.9570 -0.4984 16 6 9.1544 -6.6662 0.1394 17 6 9.4394 -6.1872 1.3444 18 6 8.4981 -5.2121 1.8365 19 6 8.6119 -4.5796 3.0862 20 1 7.7353 -4.1696 3.5657 21 6 9.8642 -4.4807 3.7111 22 7 10.9483 -4.7997 3.0556 23 14 9.9815 -3.8930 5.4804 24 1 9.8940 -5.0588 6.3960 25 1 11.2776 -3.1981 5.6862 26 1 8.8661 -2.9549 5.7654 27 6 4.7468 -1.5242 0.0104 28 1 -0.3633 -0.0005 -1.0277 29 1 -0.3633 0.8903 0.5134 30 1 -0.3634 -0.8897 0.5143 31 1 1.0648 -2.7082 -0.7175 32 1 1.5482 -2.8408 0.9932 33 1 3.3147 -3.1948 -1.4705 34 1 2.9026 -4.4228 -0.2500 35 1 5.4614 -4.3810 -0.6181 36 1 9.7500 -7.4027 -0.3795 37 1 10.3048 -6.5015 1.9090 38 1 11.8142 -4.7310 3.4874 39 1 5.1856 -1.5543 -0.9870 40 1 5.4787 -1.1426 0.7223 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869195305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:16 Heat of formation + Delta-G solvation = 52.459124 kcal Electronic energy + Delta-G solvation = -25420.752749 eV Core-core repulsion = 21748.523730 eV Total energy + Delta-G solvation = -3672.229019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.44221 -40.43076 -38.39038 -37.46145 -35.91534 -34.88937 -34.42872 -31.36286 -31.06098 -30.24082 -28.66922 -27.87041 -25.25730 -24.15592 -23.30373 -22.37150 -21.65261 -20.96766 -20.54698 -19.15612 -18.08185 -17.86647 -17.62334 -17.17134 -16.54774 -15.99060 -15.90887 -15.37958 -15.30017 -14.87759 -14.76649 -14.59830 -14.20649 -14.04230 -13.96119 -13.70493 -13.62124 -13.27176 -13.13463 -13.08077 -12.80047 -12.72645 -12.66248 -12.27852 -12.08331 -12.01493 -11.88246 -11.59426 -11.40284 -11.04082 -10.94409 -10.34898 -9.98315 -9.85889 -9.32097 -8.89772 -8.83942 -6.42606 0.33621 0.53582 1.33461 1.34273 1.40114 1.40704 1.47180 1.48512 1.80812 1.99795 2.17695 2.47538 2.58982 3.18836 3.34723 3.61879 3.75544 3.79280 3.80780 4.18298 4.24919 4.31875 4.38603 4.42860 4.54029 4.60656 4.69257 4.72049 4.88449 4.94279 4.97973 5.02760 5.09091 5.22582 5.25137 5.32083 5.42453 5.60850 5.66678 5.79379 5.87744 6.42501 6.61423 6.75039 7.02280 7.42415 7.79703 8.09012 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.003210 C = 0.002788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.790004 B = 8719.665919 C =10041.224754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.275 5.275 3 N -0.128 5.128 4 N -0.309 5.309 5 C -0.036 4.036 6 C -0.006 4.006 7 C -0.031 4.031 8 C -0.114 4.114 9 C 0.158 3.842 10 H 0.064 0.936 11 N -0.727 5.727 12 C 0.593 3.407 13 O -0.602 6.602 14 C -0.465 4.465 15 S 0.018 5.982 16 C -0.193 4.193 17 C -0.131 4.131 18 C 0.112 3.888 19 C -0.419 4.419 20 H 0.083 0.917 21 C 0.036 3.964 22 N -0.795 5.795 23 Si 0.986 3.014 24 H -0.248 1.248 25 H -0.256 1.256 26 H -0.274 1.274 27 C -0.038 4.038 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.107 0.893 35 H 0.403 0.597 36 H 0.176 0.824 37 H 0.139 0.861 38 H 0.300 0.700 39 H 0.085 0.915 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.026 -1.287 -7.466 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.068 5.068 3 N -0.106 5.106 4 N -0.173 5.173 5 C -0.178 4.178 6 C -0.142 4.142 7 C -0.070 4.070 8 C -0.152 4.152 9 C 0.052 3.948 10 H 0.082 0.918 11 N -0.378 5.378 12 C 0.389 3.611 13 O -0.488 6.488 14 C -0.583 4.583 15 S 0.274 5.726 16 C -0.327 4.327 17 C -0.164 4.164 18 C 0.101 3.899 19 C -0.450 4.450 20 H 0.101 0.899 21 C -0.184 4.184 22 N -0.420 5.420 23 Si 0.806 3.194 24 H -0.172 1.172 25 H -0.180 1.180 26 H -0.199 1.199 27 C -0.079 4.079 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.125 0.875 35 H 0.238 0.762 36 H 0.193 0.807 37 H 0.157 0.843 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.645 0.565 -8.092 20.333 hybrid contribution 1.489 -0.319 1.759 2.327 sum -17.156 0.245 -6.333 18.289 Atomic orbital electron populations 1.22831 0.69361 1.07940 1.07162 1.47278 1.10860 1.03590 1.45042 1.78443 0.95992 1.12857 1.23314 1.74736 1.10927 1.13646 1.17957 1.21715 0.96221 0.90932 1.08907 1.22323 0.89981 0.94047 1.07829 1.20325 0.99026 0.82289 1.05363 1.21850 0.91428 1.01611 1.00301 1.20819 0.87129 0.86460 1.00392 0.91789 1.45605 1.26156 1.45221 1.20842 1.17036 0.81009 0.80539 0.82468 1.90643 1.77736 1.50842 1.29555 1.23087 1.11454 1.20791 1.03013 1.82211 1.24407 1.43820 1.22141 1.25459 1.01567 1.06019 0.99651 1.21615 1.00565 0.97678 0.96512 1.18374 0.89466 0.89943 0.92132 1.20012 0.95255 1.28243 1.01527 0.89860 1.27007 0.94254 0.92762 1.04350 1.69649 1.00146 1.32915 1.39240 0.85140 0.78854 0.79579 0.75858 1.17196 1.17997 1.19908 1.20235 0.92545 0.93084 1.02043 0.86595 0.87335 0.85113 0.85099 0.87760 0.89367 0.87474 0.76172 0.80681 0.84342 0.88891 0.89700 0.93581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 11.27 127.77 1.44 1.91 16 2 N -0.27 -5.83 3.73 -356.40 -1.33 -7.16 16 3 N -0.13 -3.98 13.19 37.02 0.49 -3.49 16 4 N -0.31 -11.42 12.40 -48.99 -0.61 -12.02 16 5 C -0.04 -1.17 7.11 41.75 0.30 -0.87 16 6 C -0.01 -0.14 6.76 41.50 0.28 0.14 16 7 C -0.03 -0.40 5.94 29.94 0.18 -0.22 16 8 C -0.11 -2.00 5.37 30.78 0.17 -1.84 16 9 C 0.16 4.82 2.42 45.17 0.11 4.93 16 10 H 0.06 2.29 7.55 -2.38 -0.02 2.27 16 11 N -0.73 -26.32 5.07 -446.04 -2.26 -28.58 16 12 C 0.59 29.05 7.73 86.32 0.67 29.71 16 13 O -0.60 -34.28 14.11 -4.55 -0.06 -34.35 16 14 C -0.46 -23.39 6.51 24.67 0.16 -23.23 16 15 S 0.02 0.73 22.25 -56.49 -1.26 -0.53 16 16 C -0.19 -7.90 11.07 66.64 0.74 -7.16 16 17 C -0.13 -6.37 9.04 22.61 0.20 -6.16 16 18 C 0.11 6.12 5.68 -20.89 -0.12 6.01 16 19 C -0.42 -23.80 8.51 23.33 0.20 -23.60 16 20 H 0.08 5.07 6.04 -2.91 -0.02 5.05 16 21 C 0.04 1.82 5.39 85.38 0.46 2.28 16 22 N -0.79 -39.25 10.81 21.89 0.24 -39.01 16 23 Si 0.99 39.40 29.57 68.60 2.03 41.42 16 24 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 25 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C -0.04 -1.32 5.88 29.95 0.18 -1.14 16 28 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.13 0.12 7.96 -2.39 -0.02 0.10 16 31 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.40 12.52 7.68 -92.72 -0.71 11.81 16 36 H 0.18 5.70 8.06 -2.91 -0.02 5.68 16 37 H 0.14 6.77 6.40 -2.91 -0.02 6.75 16 38 H 0.30 13.06 8.29 -92.71 -0.77 12.29 16 39 H 0.08 2.75 8.14 -2.38 -0.02 2.73 16 40 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -79.60 348.24 2.58 -77.02 By element: Atomic # 1 Polarization: 25.56 SS G_CDS: 0.39 Total: 25.95 kcal Atomic # 6 Polarization: -24.21 SS G_CDS: 4.96 Total: -19.25 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.47 Total: -90.27 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.06 Total: -34.35 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.42 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -1.26 Total: -0.53 kcal Total: -79.60 2.58 -77.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869195305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.483 kcal (2) G-P(sol) polarization free energy of solvation -79.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds