Wall clock time and date at job start Tue Mar 31 2020 16:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.41600 * 120.00008 * 2 1 4 4 C 1.42902 * 114.00042 * 270.00354 * 3 2 1 5 5 C 1.53006 * 109.46824 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47206 * 59.99888 * 5 4 3 7 7 F 1.39906 * 109.46623 * 179.97438 * 5 4 3 8 8 F 1.39897 * 109.47138 * 299.99638 * 5 4 3 9 9 C 1.34775 * 120.00430 * 180.02562 * 2 1 3 10 10 O 1.21593 * 119.99762 * 359.97438 * 9 2 1 11 11 N 1.34775 * 120.00419 * 179.97438 * 9 2 1 12 12 C 1.46507 * 119.99909 * 179.97438 * 11 9 2 13 13 C 1.50693 * 109.46727 * 179.97438 * 12 11 9 14 14 C 1.38629 * 119.75270 * 269.72327 * 13 12 11 15 15 C 1.37622 * 120.25073 * 179.72445 * 14 13 12 16 16 C 1.40711 * 119.74255 * 0.57160 * 15 14 13 17 17 C 1.41400 * 120.24519 * 179.67986 * 16 15 14 18 18 H 1.07993 * 120.00417 * 204.40825 * 17 16 15 19 19 C 1.39949 * 119.99722 * 24.41101 * 17 16 15 20 20 N 1.30829 * 120.00062 * 17.84366 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 197.84420 * 19 17 16 22 22 H 1.48505 * 109.46835 * 60.00206 * 21 19 17 23 23 H 1.48500 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47401 * 300.00354 * 21 19 17 25 25 C 1.40712 * 119.51307 * 359.70710 * 16 15 14 26 26 C 1.37613 * 119.74639 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46656 * 269.99557 * 1 2 3 28 28 H 1.09004 * 109.46909 * 29.99842 * 1 2 3 29 29 H 1.09004 * 109.47046 * 149.99815 * 1 2 3 30 30 H 1.09002 * 109.46881 * 299.99597 * 4 3 2 31 31 H 1.08998 * 109.47459 * 60.00259 * 4 3 2 32 32 H 0.96996 * 119.99912 * 359.97438 * 11 9 2 33 33 H 1.09001 * 109.46823 * 60.00094 * 12 11 9 34 34 H 1.09000 * 109.46799 * 299.99548 * 12 11 9 35 35 H 1.08007 * 119.87515 * 359.97438 * 14 13 12 36 36 H 1.08002 * 120.12595 * 180.28405 * 15 14 13 37 37 H 0.96994 * 119.99970 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.12635 * 179.97438 * 25 16 15 39 39 H 1.08000 * 119.87953 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1730 1.2263 0.0000 4 6 2.4636 1.7297 -1.3055 5 6 3.2268 3.0503 -1.1846 6 9 4.4224 2.8361 -0.4905 7 9 3.5117 3.5428 -2.4627 8 9 2.4444 3.9792 -0.4901 9 6 2.1390 -1.1671 -0.0005 10 8 1.5310 -2.2202 -0.0005 11 7 3.4867 -1.1671 -0.0010 12 6 4.2192 -2.4359 -0.0010 13 6 5.7008 -2.1605 -0.0023 14 6 6.3773 -2.0410 -1.2064 15 6 7.7292 -1.7839 -1.2196 16 6 8.4270 -1.6543 -0.0046 17 6 9.8174 -1.3968 -0.0057 18 1 10.4193 -1.6781 0.8456 19 6 10.4134 -0.7775 -1.1101 20 7 9.6751 -0.1282 -1.9733 21 14 12.2629 -0.8778 -1.3518 22 1 12.6694 -2.3007 -1.4758 23 1 12.6412 -0.1449 -2.5867 24 1 12.9485 -0.2671 -0.1847 25 6 7.7311 -1.7833 1.2116 26 6 6.3780 -2.0338 1.2008 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 3.0735 1.0062 -1.8464 31 1 1.5320 1.8962 -1.8464 32 1 3.9717 -0.3271 -0.0014 33 1 3.9555 -3.0077 -0.8908 34 1 3.9563 -3.0072 0.8892 35 1 5.8405 -2.1461 -2.1378 36 1 8.2534 -1.6866 -2.1589 37 1 10.0883 0.3014 -2.7385 38 1 8.2569 -1.6860 2.1500 39 1 5.8417 -2.1328 2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875686030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:17 Heat of formation + Delta-G solvation = -157.010995 kcal Electronic energy + Delta-G solvation = -28557.661932 eV Core-core repulsion = 23859.447245 eV Total energy + Delta-G solvation = -4698.214687 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.30027 -47.86811 -47.73488 -40.13431 -38.00113 -37.58533 -34.91629 -33.51284 -33.40693 -30.44600 -29.77359 -29.38010 -27.60129 -25.87863 -23.73223 -23.36042 -21.10097 -20.89732 -20.14983 -19.17750 -18.83948 -18.35951 -18.13882 -17.40493 -17.09810 -15.89221 -15.45030 -15.29450 -15.12271 -14.68648 -14.62518 -14.37502 -14.30198 -14.19786 -13.96284 -13.90768 -13.88546 -13.79212 -13.45765 -13.22934 -12.74696 -12.53801 -12.07309 -12.04600 -11.99492 -11.69902 -11.27606 -11.16279 -11.06344 -10.75619 -10.48874 -10.23606 -9.72988 -9.50519 -9.38518 -9.24069 -8.65190 -7.59167 -7.47124 -6.88345 -4.47911 1.20671 2.44164 2.61405 2.96401 2.97676 3.00980 3.03353 3.09963 3.37545 3.50989 3.70033 3.84522 4.01011 4.41552 4.54500 4.63903 4.83176 4.98118 5.23553 5.50842 5.58371 5.72734 5.87430 6.08826 6.20008 6.22730 6.31956 6.68901 6.81128 6.85793 6.96263 7.16873 7.25014 7.49666 7.70756 7.93952 7.98239 8.00668 8.18071 8.49179 8.52426 8.77345 8.85126 10.05497 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003547 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.143981 B = 7892.177862 C = 9701.768886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.494 5.494 3 O -0.126 6.126 4 C -0.026 4.026 5 C 0.470 3.530 6 F -0.165 7.165 7 F -0.171 7.171 8 F -0.176 7.176 9 C 0.707 3.293 10 O -0.574 6.574 11 N -0.724 5.724 12 C 0.199 3.801 13 C -0.249 4.249 14 C -0.081 4.081 15 C -0.170 4.170 16 C 0.118 3.882 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.076 3.924 20 N -0.786 5.786 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.229 4.229 26 C -0.066 4.066 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.402 0.598 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.283 0.717 38 H 0.093 0.907 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.688 5.586 -1.538 14.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.278 5.278 3 O -0.131 6.131 4 C -0.107 4.107 5 C 0.414 3.586 6 F -0.146 7.146 7 F -0.152 7.152 8 F -0.158 7.158 9 C 0.409 3.591 10 O -0.452 6.452 11 N -0.378 5.378 12 C 0.078 3.922 13 C -0.251 4.251 14 C -0.100 4.100 15 C -0.189 4.189 16 C 0.115 3.885 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.411 5.411 21 Si 0.734 3.266 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.189 1.189 25 C -0.249 4.249 26 C -0.085 4.085 27 H 0.084 0.916 28 H 0.093 0.907 29 H 0.110 0.890 30 H 0.126 0.874 31 H 0.124 0.876 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.039 5.028 -1.564 14.994 hybrid contribution 1.237 0.962 -0.445 1.629 sum -12.802 5.990 -2.010 14.276 Atomic orbital electron populations 1.21824 0.75126 1.03573 1.03143 1.49380 1.03978 0.94050 1.80406 1.90757 1.73675 1.27235 1.21473 1.24215 1.02299 0.93494 0.90646 1.19850 0.78636 0.85930 0.74197 1.93315 1.47364 1.94671 1.79238 1.93238 1.93830 1.88853 1.39316 1.93222 1.74300 1.68697 1.79553 1.16062 0.82997 0.81810 0.78181 1.90961 1.68012 1.27076 1.59164 1.45912 1.03433 1.11756 1.76716 1.19924 0.88626 0.82848 1.00824 1.18953 0.92469 1.19749 0.93908 1.20540 0.94911 0.99425 0.95080 1.21301 0.93131 1.05694 0.98771 1.17664 0.93015 0.86832 0.90941 1.19649 0.93316 1.33768 1.01922 0.90262 1.25950 1.00938 0.92637 0.94743 1.69810 1.38277 1.22235 1.10734 0.86340 0.82067 0.79653 0.78572 1.18704 1.20243 1.18901 1.20976 0.93641 1.13191 0.97078 1.20415 0.94401 0.98383 0.95326 0.91579 0.90669 0.89042 0.87407 0.87634 0.76254 0.92264 0.92222 0.89475 0.86371 0.90620 0.88859 0.89304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.82 59.85 0.65 1.58 16 2 N -0.49 -6.25 3.36 -72.07 -0.24 -6.49 16 3 O -0.13 -1.53 10.08 -11.47 -0.12 -1.65 16 4 C -0.03 -0.26 6.28 37.16 0.23 -0.03 16 5 C 0.47 5.29 3.32 37.16 0.12 5.41 16 6 F -0.16 -2.34 17.26 2.25 0.04 -2.30 16 7 F -0.17 -1.93 17.32 2.25 0.04 -1.89 16 8 F -0.18 -2.00 17.26 2.25 0.04 -1.96 16 9 C 0.71 11.20 8.41 -86.92 -0.73 10.47 16 10 O -0.57 -10.51 15.92 5.28 0.08 -10.42 16 11 N -0.72 -11.85 5.52 -66.41 -0.37 -12.21 16 12 C 0.20 3.53 5.79 -5.19 -0.03 3.50 16 13 C -0.25 -5.08 5.27 -104.33 -0.55 -5.63 16 14 C -0.08 -1.76 9.67 -39.66 -0.38 -2.14 16 15 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 16 C 0.12 3.02 5.57 -106.83 -0.60 2.42 16 17 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 18 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 19 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 20 N -0.79 -19.48 10.95 55.55 0.61 -18.87 16 21 Si 0.91 17.99 29.59 -169.99 -5.03 12.96 16 22 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 23 H -0.28 -5.35 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 25 C -0.23 -5.40 9.80 -38.88 -0.38 -5.78 16 26 C -0.07 -1.41 9.67 -39.66 -0.38 -1.80 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.09 0.84 7.42 -51.93 -0.39 0.46 16 30 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.40 6.56 7.53 -40.82 -0.31 6.26 16 33 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.06 1.05 8.08 -51.93 -0.42 0.64 16 35 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 36 H 0.12 3.02 6.16 -52.49 -0.32 2.70 16 37 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 38 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 356.27 15.07 5.37 5.37 Total: -1.00 -28.34 356.27 -6.76 -35.09 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -4.36 Total: 9.15 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.82 Total: -6.77 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.00 Total: -37.58 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.03 Total: -12.07 kcal Atomic # 9 Polarization: -6.27 SS G_CDS: 0.12 Total: -6.15 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.34 -6.76 -35.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875686030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.916 kcal (2) G-P(sol) polarization free energy of solvation -28.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds