Wall clock time and date at job start Tue Mar 31 2020 16:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 O 1.41600 * 120.00008 * 2 1 4 4 C 1.42902 * 114.00042 * 270.00354 * 3 2 1 5 5 C 1.53006 * 109.46824 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47206 * 59.99888 * 5 4 3 7 7 F 1.39906 * 109.46623 * 179.97438 * 5 4 3 8 8 F 1.39897 * 109.47138 * 299.99638 * 5 4 3 9 9 C 1.34775 * 120.00430 * 180.02562 * 2 1 3 10 10 O 1.21593 * 119.99762 * 359.97438 * 9 2 1 11 11 N 1.34775 * 120.00419 * 179.97438 * 9 2 1 12 12 C 1.46507 * 119.99909 * 179.97438 * 11 9 2 13 13 C 1.50693 * 109.46727 * 179.97438 * 12 11 9 14 14 C 1.38629 * 119.75270 * 269.72327 * 13 12 11 15 15 C 1.37622 * 120.25073 * 179.72445 * 14 13 12 16 16 C 1.40711 * 119.74255 * 0.57160 * 15 14 13 17 17 C 1.41400 * 120.24519 * 179.67986 * 16 15 14 18 18 H 1.07993 * 120.00417 * 204.40825 * 17 16 15 19 19 C 1.39949 * 119.99722 * 24.41101 * 17 16 15 20 20 N 1.30829 * 120.00062 * 17.84366 * 19 17 16 21 21 Si 1.86798 * 120.00043 * 197.84420 * 19 17 16 22 22 H 1.48505 * 109.46835 * 60.00206 * 21 19 17 23 23 H 1.48500 * 109.47096 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47401 * 300.00354 * 21 19 17 25 25 C 1.40712 * 119.51307 * 359.70710 * 16 15 14 26 26 C 1.37613 * 119.74639 * 359.97438 * 25 16 15 27 27 H 1.09002 * 109.46656 * 269.99557 * 1 2 3 28 28 H 1.09004 * 109.46909 * 29.99842 * 1 2 3 29 29 H 1.09004 * 109.47046 * 149.99815 * 1 2 3 30 30 H 1.09002 * 109.46881 * 299.99597 * 4 3 2 31 31 H 1.08998 * 109.47459 * 60.00259 * 4 3 2 32 32 H 0.96996 * 119.99912 * 359.97438 * 11 9 2 33 33 H 1.09001 * 109.46823 * 60.00094 * 12 11 9 34 34 H 1.09000 * 109.46799 * 299.99548 * 12 11 9 35 35 H 1.08007 * 119.87515 * 359.97438 * 14 13 12 36 36 H 1.08002 * 120.12595 * 180.28405 * 15 14 13 37 37 H 0.96994 * 119.99970 * 179.97438 * 20 19 17 38 38 H 1.08000 * 120.12635 * 179.97438 * 25 16 15 39 39 H 1.08000 * 119.87953 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1730 1.2263 0.0000 4 6 2.4636 1.7297 -1.3055 5 6 3.2268 3.0503 -1.1846 6 9 4.4224 2.8361 -0.4905 7 9 3.5117 3.5428 -2.4627 8 9 2.4444 3.9792 -0.4901 9 6 2.1390 -1.1671 -0.0005 10 8 1.5310 -2.2202 -0.0005 11 7 3.4867 -1.1671 -0.0010 12 6 4.2192 -2.4359 -0.0010 13 6 5.7008 -2.1605 -0.0023 14 6 6.3773 -2.0410 -1.2064 15 6 7.7292 -1.7839 -1.2196 16 6 8.4270 -1.6543 -0.0046 17 6 9.8174 -1.3968 -0.0057 18 1 10.4193 -1.6781 0.8456 19 6 10.4134 -0.7775 -1.1101 20 7 9.6751 -0.1282 -1.9733 21 14 12.2629 -0.8778 -1.3518 22 1 12.6694 -2.3007 -1.4758 23 1 12.6412 -0.1449 -2.5867 24 1 12.9485 -0.2671 -0.1847 25 6 7.7311 -1.7833 1.2116 26 6 6.3780 -2.0338 1.2008 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 3.0735 1.0062 -1.8464 31 1 1.5320 1.8962 -1.8464 32 1 3.9717 -0.3271 -0.0014 33 1 3.9555 -3.0077 -0.8908 34 1 3.9563 -3.0072 0.8892 35 1 5.8405 -2.1461 -2.1378 36 1 8.2534 -1.6866 -2.1589 37 1 10.0883 0.3014 -2.7385 38 1 8.2569 -1.6860 2.1500 39 1 5.8417 -2.1328 2.1330 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875686030.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:16 Heat of formation + Delta-G solvation = -172.354014 kcal Electronic energy + Delta-G solvation = -28558.327255 eV Core-core repulsion = 23859.447245 eV Total energy + Delta-G solvation = -4698.880010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.23653 -48.78398 -48.71993 -41.31646 -39.55068 -38.80590 -36.43712 -35.12264 -34.43039 -32.11356 -31.17237 -30.63635 -29.02448 -27.15113 -25.11066 -24.44061 -22.89969 -22.03049 -21.81879 -20.31449 -19.76340 -19.36322 -19.23676 -19.05643 -18.13581 -17.21090 -16.96401 -16.49485 -16.28369 -15.89300 -15.70157 -15.63147 -15.58637 -15.28089 -15.14997 -15.10833 -14.97484 -14.87037 -14.86230 -14.22146 -14.17359 -13.82269 -13.56648 -13.47933 -13.35031 -12.89291 -12.81167 -12.72227 -12.49428 -12.20412 -12.10801 -11.56702 -11.39881 -11.28652 -11.02207 -10.49864 -9.86685 -9.39760 -9.28826 -8.66951 -6.37011 0.25777 0.84799 1.14462 1.38544 1.46471 1.50677 1.63274 1.82455 2.18456 2.21522 2.61921 2.72355 2.83884 3.02006 3.57617 3.74852 3.85584 3.97528 4.15148 4.32434 4.34707 4.51769 4.56788 4.67049 4.76861 4.86274 5.04535 5.14297 5.16536 5.34495 5.40014 5.44630 5.66213 5.68645 5.93479 6.08530 6.19987 6.36558 6.67818 6.75589 6.91871 7.00784 7.26435 8.29213 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.003547 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.143981 B = 7892.177862 C = 9701.768886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.488 5.488 3 O -0.137 6.137 4 C -0.024 4.024 5 C 0.471 3.529 6 F -0.186 7.186 7 F -0.171 7.171 8 F -0.176 7.176 9 C 0.708 3.292 10 O -0.601 6.601 11 N -0.726 5.726 12 C 0.209 3.791 13 C -0.231 4.231 14 C -0.080 4.080 15 C -0.192 4.192 16 C 0.088 3.912 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.038 3.962 20 N -0.817 5.817 21 Si 0.980 3.020 22 H -0.261 1.261 23 H -0.267 1.267 24 H -0.260 1.260 25 C -0.245 4.245 26 C -0.067 4.067 27 H 0.073 0.927 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.403 0.597 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.289 0.711 38 H 0.096 0.904 39 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.195 5.941 -1.799 16.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.271 5.271 3 O -0.142 6.142 4 C -0.103 4.103 5 C 0.415 3.585 6 F -0.168 7.168 7 F -0.152 7.152 8 F -0.157 7.157 9 C 0.410 3.590 10 O -0.481 6.481 11 N -0.380 5.380 12 C 0.086 3.914 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.211 4.211 16 C 0.085 3.915 17 C -0.527 4.527 18 H 0.094 0.906 19 C -0.178 4.178 20 N -0.443 5.443 21 Si 0.801 3.199 22 H -0.185 1.185 23 H -0.191 1.191 24 H -0.185 1.185 25 C -0.265 4.265 26 C -0.086 4.086 27 H 0.091 0.909 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.160 0.840 32 H 0.238 0.762 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.583 5.415 -1.820 16.597 hybrid contribution 1.499 0.893 -0.331 1.776 sum -14.084 6.308 -2.151 15.581 Atomic orbital electron populations 1.22122 0.72676 1.05139 1.04168 1.49316 1.04948 0.93504 1.79343 1.90738 1.74084 1.26489 1.22897 1.24329 1.03773 0.92370 0.89874 1.20027 0.77987 0.86604 0.73864 1.93274 1.48882 1.94828 1.79799 1.93238 1.93834 1.88936 1.39208 1.93222 1.74087 1.68843 1.79584 1.16036 0.82516 0.82478 0.77948 1.90948 1.68410 1.28454 1.60274 1.45651 1.03945 1.11088 1.77308 1.19735 0.86649 0.83574 1.01410 1.19207 0.94020 1.16980 0.93042 1.20762 0.94030 0.98426 0.96650 1.21266 0.94379 1.07540 0.97960 1.17992 0.93679 0.87848 0.91951 1.19886 0.93918 1.35814 1.03093 0.90610 1.26729 1.05426 0.91649 0.93970 1.69855 1.40185 1.22886 1.11340 0.85284 0.76238 0.79632 0.78789 1.18499 1.19126 1.18476 1.21156 0.94784 1.13834 0.96708 1.20695 0.93690 0.97380 0.96820 0.90883 0.87363 0.89210 0.87500 0.84003 0.76196 0.91692 0.91749 0.87411 0.88027 0.89999 0.88558 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.46 10.82 127.77 1.38 2.84 16 2 N -0.49 -11.06 3.36 -500.18 -1.68 -12.74 16 3 O -0.14 -2.99 10.08 -38.78 -0.39 -3.38 16 4 C -0.02 -0.41 6.28 71.98 0.45 0.04 16 5 C 0.47 9.90 3.32 71.98 0.24 10.14 16 6 F -0.19 -5.22 17.26 44.97 0.78 -4.44 16 7 F -0.17 -3.61 17.32 44.97 0.78 -2.83 16 8 F -0.18 -3.69 17.26 44.97 0.78 -2.92 16 9 C 0.71 20.92 8.41 179.06 1.51 22.43 16 10 O -0.60 -20.83 15.92 -4.01 -0.06 -20.89 16 11 N -0.73 -22.35 5.52 -482.29 -2.66 -25.01 16 12 C 0.21 6.98 5.79 85.63 0.50 7.48 16 13 C -0.23 -9.14 5.27 -19.68 -0.10 -9.24 16 14 C -0.08 -3.45 9.67 22.22 0.21 -3.24 16 15 C -0.19 -9.69 8.70 22.73 0.20 -9.50 16 16 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 17 C -0.50 -26.36 9.05 23.46 0.21 -26.14 16 18 H 0.08 3.88 7.91 -2.91 -0.02 3.85 16 19 C 0.04 1.88 5.14 85.26 0.44 2.32 16 20 N -0.82 -41.56 10.95 21.83 0.24 -41.32 16 21 Si 0.98 37.34 29.59 68.60 2.03 39.37 16 22 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 23 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 24 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 25 C -0.25 -11.71 9.80 22.73 0.22 -11.48 16 26 C -0.07 -2.80 9.67 22.22 0.21 -2.59 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.09 1.42 7.42 -2.38 -0.02 1.40 16 30 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.40 12.48 7.53 -92.71 -0.70 11.78 16 33 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 34 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 37 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 38 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.11 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -62.10 356.27 5.56 -56.54 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.41 Total: 30.08 kcal Atomic # 6 Polarization: -17.80 SS G_CDS: 5.35 Total: -12.45 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -4.10 Total: -79.07 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.45 Total: -24.27 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 2.33 Total: -10.19 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Total: -62.10 5.56 -56.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875686030.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.819 kcal (2) G-P(sol) polarization free energy of solvation -62.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds