Wall clock time and date at job start Tue Mar 31 2020 16:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34223 * 117.00049 * 2 1 4 4 O 1.20831 * 119.99901 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99911 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.47056 * 180.02562 * 5 3 2 7 7 N 1.46500 * 109.47081 * 180.02562 * 6 5 3 8 8 C 1.36943 * 119.99507 * 272.16178 * 7 6 5 9 9 H 1.07999 * 119.99963 * 35.92981 * 8 7 6 10 10 C 1.38807 * 119.99923 * 215.92662 * 8 7 6 11 11 N 1.31617 * 120.00126 * 22.91346 * 10 8 7 12 12 Si 1.86804 * 119.99756 * 202.91413 * 10 8 7 13 13 H 1.48501 * 109.46954 * 90.00158 * 12 10 8 14 14 H 1.48501 * 109.47051 * 209.99845 * 12 10 8 15 15 H 1.48491 * 109.47472 * 330.00141 * 12 10 8 16 16 C 1.46498 * 120.00691 * 92.16348 * 7 6 5 17 17 C 1.50699 * 109.47153 * 275.53100 * 16 7 6 18 18 N 1.31886 * 119.61578 * 288.00440 * 17 16 7 19 19 C 1.31852 * 121.72487 * 179.97438 * 18 17 16 20 20 C 1.38228 * 120.76743 * 0.02562 * 19 18 17 21 21 C 1.38627 * 119.15581 * 359.97438 * 20 19 18 22 22 C 1.38180 * 119.62037 * 107.99807 * 17 16 7 23 23 C 1.50703 * 120.41603 * 0.02845 * 22 17 16 24 24 F 1.39900 * 109.47022 * 176.86006 * 23 22 17 25 25 F 1.39900 * 109.47119 * 296.85624 * 23 22 17 26 26 F 1.39895 * 109.47176 * 56.85734 * 23 22 17 27 27 H 1.09000 * 109.47225 * 60.00448 * 1 2 3 28 28 H 1.09002 * 109.47289 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47338 * 300.00139 * 1 2 3 30 30 H 1.09002 * 109.47189 * 59.99706 * 5 3 2 31 31 H 1.08999 * 109.47435 * 299.99526 * 5 3 2 32 32 H 1.08995 * 109.47021 * 59.99661 * 6 5 3 33 33 H 1.09006 * 109.46721 * 299.99625 * 6 5 3 34 34 H 0.97002 * 119.99867 * 179.97438 * 11 10 8 35 35 H 1.08999 * 109.47331 * 155.52393 * 16 7 6 36 36 H 1.09001 * 109.46640 * 35.52993 * 16 7 6 37 37 H 1.08002 * 119.61801 * 179.97438 * 19 18 17 38 38 H 1.07993 * 120.41844 * 180.02562 * 20 19 18 39 39 H 1.08001 * 120.78779 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 7 5.4631 2.8186 0.0011 8 6 6.1492 2.8093 1.1862 9 1 5.7942 2.2093 2.0110 10 6 7.3009 3.5711 1.3274 11 7 7.4989 4.6150 0.5506 12 14 8.5700 3.1146 2.6199 13 1 9.5604 2.1772 2.0318 14 1 9.2655 4.3412 3.0857 15 1 7.8933 2.4625 3.7695 16 6 6.1922 2.9053 -1.2667 17 6 6.3975 1.5201 -1.8237 18 7 7.2615 0.7073 -1.2473 19 6 7.4735 -0.5130 -1.6995 20 6 6.7909 -0.9862 -2.8044 21 6 5.8745 -0.1604 -3.4368 22 6 5.6784 1.1163 -2.9324 23 6 4.6935 2.0517 -3.5851 24 9 4.1515 1.4400 -4.7206 25 9 3.6674 2.3523 -2.6828 26 9 5.3470 3.2311 -3.9579 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9564 0.7804 -0.8891 31 1 3.9557 0.7809 0.8908 32 1 3.6100 3.2359 0.8910 33 1 3.6107 3.2363 -0.8890 34 1 8.3036 5.1475 0.6495 35 1 7.1605 3.3762 -1.0975 36 1 5.6176 3.5007 -1.9762 37 1 8.1895 -1.1499 -1.2013 38 1 6.9686 -1.9868 -3.1697 39 1 5.3262 -0.5033 -4.3018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709434.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:07 Heat of formation + Delta-G solvation = -187.289394 kcal Electronic energy + Delta-G solvation = -30648.850962 eV Core-core repulsion = 25949.323305 eV Total energy + Delta-G solvation = -4699.527657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -51.27369 -48.76102 -48.69599 -41.51084 -41.20583 -38.02109 -37.32692 -34.08234 -33.89485 -33.45882 -31.43871 -28.71025 -28.21228 -27.07529 -26.10289 -24.04719 -23.34398 -22.47474 -21.54415 -19.64297 -19.52894 -19.32520 -18.93591 -18.56099 -17.63407 -17.58741 -17.26433 -16.99374 -16.53899 -16.11999 -15.63214 -15.43410 -15.31092 -15.26434 -15.05179 -15.01318 -14.83397 -14.69150 -14.55272 -14.39327 -14.13108 -13.78201 -13.59880 -13.35983 -13.15268 -12.88544 -12.73590 -12.53112 -12.39703 -12.17790 -11.99795 -11.82823 -11.67235 -11.55519 -11.02351 -10.54383 -10.32387 -10.03041 -8.70852 -7.88941 -5.44748 -0.15224 0.30320 1.15603 1.49128 1.54027 1.58974 1.62922 1.76011 2.52377 2.68960 2.69336 3.00890 3.23277 3.36987 3.52197 3.61677 3.84592 3.93944 3.95467 4.11126 4.18349 4.30370 4.32760 4.33575 4.48605 4.60667 4.66432 4.69729 4.80648 4.94252 5.01479 5.10118 5.21235 5.35772 5.50437 5.67556 5.69436 6.40689 6.72213 7.07616 7.16363 7.75115 8.27903 9.13062 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.009200 B = 0.006378 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3042.838656 B = 4389.119757 C = 5739.889796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.472 3.528 4 O -0.534 6.534 5 C -0.117 4.117 6 C 0.158 3.842 7 N -0.573 5.573 8 C -0.259 4.259 9 H 0.058 0.942 10 C -0.021 4.021 11 N -0.914 5.914 12 Si 0.957 3.043 13 H -0.284 1.284 14 H -0.296 1.296 15 H -0.270 1.270 16 C 0.176 3.824 17 C 0.168 3.832 18 N -0.496 5.496 19 C 0.119 3.881 20 C -0.173 4.173 21 C -0.028 4.028 22 C -0.263 4.263 23 C 0.513 3.487 24 F -0.171 7.171 25 F -0.178 7.178 26 F -0.182 7.182 27 H 0.061 0.939 28 H 0.135 0.865 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.054 0.946 34 H 0.254 0.746 35 H 0.084 0.916 36 H 0.048 0.952 37 H 0.185 0.815 38 H 0.187 0.813 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -14.811 -9.170 18.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.157 4.157 6 C 0.032 3.968 7 N -0.291 5.291 8 C -0.389 4.389 9 H 0.076 0.924 10 C -0.219 4.219 11 N -0.557 5.557 12 Si 0.785 3.215 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.195 1.195 16 C 0.049 3.951 17 C 0.028 3.972 18 N -0.205 5.205 19 C -0.039 4.039 20 C -0.192 4.192 21 C -0.054 4.054 22 C -0.267 4.267 23 C 0.459 3.541 24 F -0.152 7.152 25 F -0.159 7.159 26 F -0.163 7.163 27 H 0.080 0.920 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.202 0.798 38 H 0.204 0.796 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -5.996 -14.021 -8.410 17.414 hybrid contribution -0.072 0.251 -0.111 0.284 sum -6.068 -13.770 -8.520 17.292 Atomic orbital electron populations 1.23562 0.74877 1.05751 1.02481 1.86519 1.25113 1.32794 1.83864 1.23976 0.92186 0.81238 0.71000 1.90621 1.67780 1.37263 1.46690 1.21994 0.86112 1.02716 1.04866 1.20747 0.84036 0.91660 1.00369 1.43688 0.99749 1.84151 1.01524 1.19087 1.07372 1.20621 0.91783 0.92407 1.25688 1.02084 0.94210 0.99933 1.70137 1.27087 1.15538 1.42910 0.85452 0.79786 0.76900 0.79330 1.21012 1.22293 1.19478 1.20035 0.99966 0.88339 0.86728 1.22336 0.88225 0.98484 0.88140 1.67817 1.16807 1.05456 1.30392 1.23744 0.96084 0.91127 0.92919 1.22489 0.97033 1.02726 0.96999 1.21756 0.95194 0.89915 0.98509 1.20937 1.04629 0.98403 1.02752 1.18222 0.80181 0.79460 0.76269 1.93141 1.87056 1.82619 1.52392 1.93215 1.61832 1.93651 1.67194 1.93174 1.81147 1.50322 1.91651 0.92041 0.84688 0.92079 0.88780 0.88257 0.94003 0.92782 0.93728 0.89873 0.93438 0.79790 0.79603 0.81036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.37 -10.66 10.56 -51.35 -0.54 -11.20 16 3 C 0.47 16.61 7.96 71.24 0.57 17.17 16 4 O -0.53 -21.32 15.73 21.95 0.35 -20.97 16 5 C -0.12 -4.34 5.48 29.85 0.16 -4.18 16 6 C 0.16 7.03 4.39 86.38 0.38 7.41 16 7 N -0.57 -28.32 2.42 -706.34 -1.71 -30.03 16 8 C -0.26 -13.94 9.47 84.03 0.80 -13.14 16 9 H 0.06 3.11 7.93 -2.91 -0.02 3.08 16 10 C -0.02 -1.16 4.87 84.86 0.41 -0.75 16 11 N -0.91 -53.04 11.54 21.65 0.25 -52.79 16 12 Si 0.96 44.73 29.61 68.60 2.03 46.76 16 13 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 15 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 16 C 0.18 8.38 5.03 85.63 0.43 8.81 16 17 C 0.17 6.64 5.63 42.54 0.24 6.88 16 18 N -0.50 -19.02 10.27 -183.89 -1.89 -20.91 16 19 C 0.12 3.15 11.18 84.69 0.95 4.10 16 20 C -0.17 -3.39 10.11 22.36 0.23 -3.17 16 21 C -0.03 -0.65 9.54 22.47 0.21 -0.43 16 22 C -0.26 -8.41 4.63 -19.77 -0.09 -8.50 16 23 C 0.51 16.68 2.79 71.24 0.20 16.88 16 24 F -0.17 -4.63 16.06 44.97 0.72 -3.91 16 25 F -0.18 -6.40 11.85 44.97 0.53 -5.86 16 26 F -0.18 -6.46 15.32 44.97 0.69 -5.77 16 27 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 28 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.06 1.27 8.13 -2.39 -0.02 1.25 16 30 H 0.09 3.40 5.88 -2.39 -0.01 3.39 16 31 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 32 H 0.04 1.99 8.02 -2.39 -0.02 1.97 16 33 H 0.05 2.43 5.55 -2.38 -0.01 2.42 16 34 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 35 H 0.08 4.60 5.53 -2.39 -0.01 4.59 16 36 H 0.05 2.23 4.62 -2.39 -0.01 2.22 16 37 H 0.19 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.19 1.85 8.06 -2.91 -0.02 1.83 16 39 H 0.17 2.81 7.27 -2.91 -0.02 2.79 16 Total: -1.00 -68.92 338.10 7.22 -61.70 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.11 Total: 10.16 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 5.68 Total: 32.82 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -3.35 Total: -103.72 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.20 Total: -32.18 kcal Atomic # 9 Polarization: -17.49 SS G_CDS: 1.94 Total: -15.54 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -68.92 7.22 -61.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709434.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.588 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds