Wall clock time and date at job start Tue Mar 31 2020 16:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99510 * 2 1 4 4 O 1.20820 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 179.97438 * 5 3 2 7 7 N 1.46509 * 109.46588 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00178 * 275.41835 * 7 6 5 9 9 H 1.08008 * 119.99662 * 34.01787 * 8 7 6 10 10 C 1.38812 * 120.00323 * 214.01995 * 8 7 6 11 11 N 1.31621 * 119.99444 * 23.35544 * 10 8 7 12 12 Si 1.86799 * 120.00038 * 203.35397 * 10 8 7 13 13 H 1.48506 * 109.46784 * 60.00104 * 12 10 8 14 14 H 1.48497 * 109.46823 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47534 * 300.00071 * 12 10 8 16 16 C 1.46500 * 119.99661 * 95.42320 * 7 6 5 17 17 C 1.50706 * 109.46869 * 269.99580 * 16 7 6 18 18 C 1.38222 * 119.61655 * 95.00231 * 17 16 7 19 19 C 1.38632 * 119.15852 * 179.97438 * 18 17 16 20 20 C 1.38668 * 118.42272 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.42026 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47152 * 90.00606 * 21 20 19 23 23 F 1.39898 * 109.47106 * 210.00226 * 21 20 19 24 24 F 1.39900 * 109.46948 * 330.00323 * 21 20 19 25 25 C 1.38185 * 119.16472 * 0.02562 * 20 19 18 26 26 N 1.31858 * 119.61791 * 274.72660 * 17 16 7 27 27 H 1.08995 * 109.47290 * 300.00312 * 1 2 3 28 28 H 1.08998 * 109.46743 * 60.00695 * 1 2 3 29 29 H 1.09003 * 109.46524 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46795 * 59.99521 * 5 3 2 31 31 H 1.08997 * 109.46748 * 300.00039 * 5 3 2 32 32 H 1.08997 * 109.47392 * 60.00094 * 6 5 3 33 33 H 1.08997 * 109.47002 * 299.99447 * 6 5 3 34 34 H 0.97004 * 119.99266 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.46979 * 149.99914 * 16 7 6 36 36 H 1.08995 * 109.47602 * 29.99405 * 16 7 6 37 37 H 1.07998 * 120.42065 * 359.95837 * 18 17 16 38 38 H 1.08002 * 120.78501 * 180.02562 * 19 18 17 39 39 H 1.07993 * 119.62179 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 6 4.0000 2.7423 -0.0002 7 7 5.4631 2.8190 0.0010 8 6 6.1517 2.7439 1.1822 9 1 5.7816 2.1226 1.9844 10 6 7.3253 3.4663 1.3486 11 7 7.5471 4.5386 0.6182 12 14 8.5896 2.9167 2.6090 13 1 9.0558 1.5463 2.2773 14 1 9.7446 3.8499 2.5909 15 1 7.9739 2.9165 3.9603 16 6 6.1893 2.9761 -1.2616 17 6 6.5125 1.6173 -1.8276 18 6 5.6684 1.0483 -2.7627 19 6 5.9752 -0.2018 -3.2774 20 6 7.1249 -0.8355 -2.8308 21 6 7.5017 -2.1950 -3.3606 22 9 8.3086 -2.0467 -4.4938 23 9 8.2037 -2.9005 -2.3775 24 9 6.3426 -2.8999 -3.7025 25 6 7.9208 -0.2047 -1.8937 26 7 7.6002 0.9873 -1.4291 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 3.6099 3.2369 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.3670 5.0436 0.7348 35 1 7.1141 3.5246 -1.0830 36 1 5.5711 3.5271 -1.9703 37 1 4.7811 1.5709 -3.0879 38 1 5.3344 -0.6706 -4.0095 39 1 8.8176 -0.6916 -1.5404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879471594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:10 Heat of formation + Delta-G solvation = -179.510466 kcal Electronic energy + Delta-G solvation = -28963.254250 eV Core-core repulsion = 24264.063913 eV Total energy + Delta-G solvation = -4699.190337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.10607 -47.62800 -47.57268 -40.23201 -39.91959 -36.62698 -35.90105 -32.84650 -32.24937 -31.80524 -30.03623 -27.79083 -27.07969 -25.04707 -24.27907 -23.33451 -22.01236 -20.92039 -20.07100 -18.44918 -18.40173 -18.27413 -17.43194 -17.06014 -16.35141 -16.30746 -16.04564 -15.49930 -14.72232 -14.48323 -14.40342 -14.27508 -14.17566 -14.02560 -13.78589 -13.77984 -13.74204 -13.58030 -13.28701 -12.98010 -12.87580 -12.67889 -12.25331 -12.12248 -11.73698 -11.31276 -11.25869 -10.86964 -10.75097 -10.69755 -10.39094 -10.25745 -10.18756 -10.09499 -9.71848 -9.04103 -8.83529 -8.61431 -6.90717 -5.97880 -3.49744 1.06482 1.48475 2.46764 2.73682 2.93601 3.35882 3.41638 3.47419 3.80698 3.90184 4.09473 4.40787 4.52460 4.74082 4.91157 5.03024 5.07249 5.10449 5.16621 5.25710 5.32292 5.44037 5.51982 5.57458 5.70892 5.83882 5.86262 6.04275 6.07934 6.29991 6.44946 6.51066 6.57032 6.81111 6.92260 7.41425 7.66709 7.98314 8.25320 8.46426 8.94287 9.59619 10.09436 11.04137 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007317 B = 0.005475 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.987334 B = 5112.757329 C = 7912.999871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.463 3.537 4 O -0.511 6.511 5 C -0.137 4.137 6 C 0.159 3.841 7 N -0.561 5.561 8 C -0.266 4.266 9 H 0.064 0.936 10 C 0.028 3.972 11 N -0.875 5.875 12 Si 0.902 3.098 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.283 1.283 16 C 0.169 3.831 17 C 0.169 3.831 18 C -0.186 4.186 19 C -0.030 4.030 20 C -0.274 4.274 21 C 0.518 3.482 22 F -0.181 7.181 23 F -0.178 7.178 24 F -0.181 7.181 25 C 0.155 3.845 26 N -0.454 5.454 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.260 0.740 35 H 0.124 0.876 36 H 0.052 0.948 37 H 0.136 0.864 38 H 0.135 0.865 39 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 -10.615 -7.806 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.307 3.693 4 O -0.399 6.399 5 C -0.178 4.178 6 C 0.032 3.968 7 N -0.278 5.278 8 C -0.394 4.394 9 H 0.082 0.918 10 C -0.174 4.174 11 N -0.515 5.515 12 Si 0.731 3.269 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.209 1.209 16 C 0.042 3.958 17 C 0.029 3.971 18 C -0.207 4.207 19 C -0.056 4.056 20 C -0.278 4.278 21 C 0.463 3.537 22 F -0.162 7.162 23 F -0.160 7.160 24 F -0.163 7.163 25 C -0.005 4.005 26 N -0.162 5.162 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.070 0.930 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -5.187 -9.709 -7.146 13.124 hybrid contribution -0.055 -1.312 -0.166 1.324 sum -5.242 -11.022 -7.312 14.228 Atomic orbital electron populations 1.23181 0.77322 1.03146 1.02296 1.86575 1.22805 1.34517 1.84425 1.24342 0.92635 0.80853 0.71508 1.90631 1.67426 1.36293 1.45547 1.22437 0.85031 1.05041 1.05277 1.20742 0.84923 0.89775 1.01367 1.43740 0.99042 1.82852 1.02146 1.18927 1.06061 1.22189 0.92243 0.91825 1.25011 1.00173 0.94093 0.98087 1.69937 1.25895 1.13905 1.41761 0.86395 0.81039 0.78771 0.80736 1.20296 1.21522 1.20869 1.20334 1.01533 0.87673 0.86232 1.23419 0.86882 0.99695 0.87140 1.22064 1.02298 0.95933 1.00435 1.21205 0.93690 0.94181 0.96529 1.20833 1.02780 0.96165 1.08041 1.18179 0.74333 0.85863 0.75332 1.93205 1.74227 1.95909 1.52897 1.93180 1.79604 1.80899 1.62290 1.93165 1.49505 1.81043 1.92570 1.22712 0.97119 0.90827 0.89792 1.67987 1.17870 1.06969 1.23415 0.92123 0.92187 0.88599 0.88798 0.87966 0.91779 0.93079 0.93023 0.85884 0.93010 0.84566 0.84684 0.82740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.26 10.57 -39.26 -0.41 -5.67 16 3 C 0.46 7.50 7.96 36.01 0.29 7.79 16 4 O -0.51 -9.33 15.73 -18.75 -0.29 -9.63 16 5 C -0.14 -2.29 6.11 -27.88 -0.17 -2.46 16 6 C 0.16 3.06 5.01 -4.04 -0.02 3.04 16 7 N -0.56 -12.43 2.44 -174.61 -0.43 -12.86 16 8 C -0.27 -6.65 9.48 -15.06 -0.14 -6.79 16 9 H 0.06 1.60 7.93 -52.48 -0.42 1.19 16 10 C 0.03 0.73 4.94 -17.43 -0.09 0.65 16 11 N -0.87 -23.36 11.34 55.49 0.63 -22.73 16 12 Si 0.90 20.93 29.61 -169.99 -5.03 15.89 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.17 3.54 5.64 -5.19 -0.03 3.51 16 17 C 0.17 3.15 6.29 -82.58 -0.52 2.63 16 18 C -0.19 -2.81 8.25 -39.44 -0.33 -3.14 16 19 C -0.03 -0.42 9.52 -39.28 -0.37 -0.79 16 20 C -0.27 -4.00 5.46 -104.48 -0.57 -4.57 16 21 C 0.52 6.88 3.38 36.01 0.12 7.01 16 22 F -0.18 -2.41 17.30 2.25 0.04 -2.37 16 23 F -0.18 -2.41 16.49 2.25 0.04 -2.38 16 24 F -0.18 -2.35 16.53 2.25 0.04 -2.31 16 25 C 0.16 2.56 10.56 -17.55 -0.19 2.38 16 26 N -0.45 -8.97 10.27 -9.47 -0.10 -9.07 16 27 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 28 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.09 1.50 6.51 -51.93 -0.34 1.16 16 31 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 32 H 0.06 1.33 8.04 -51.93 -0.42 0.91 16 33 H 0.05 0.94 7.79 -51.93 -0.40 0.53 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.12 3.01 5.33 -51.93 -0.28 2.74 16 36 H 0.05 0.98 7.76 -51.93 -0.40 0.57 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.14 1.49 7.69 -52.49 -0.40 1.09 16 39 H 0.16 2.25 7.61 -52.49 -0.40 1.85 16 LS Contribution 352.35 15.07 5.31 5.31 Total: -1.00 -28.35 352.35 -5.47 -33.82 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -4.31 Total: 1.30 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: -0.95 Total: 10.69 kcal Atomic # 7 Polarization: -44.77 SS G_CDS: 0.11 Total: -44.66 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.71 Total: -15.30 kcal Atomic # 9 Polarization: -7.17 SS G_CDS: 0.11 Total: -7.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.35 -5.47 -33.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.686 kcal (2) G-P(sol) polarization free energy of solvation -28.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds