Wall clock time and date at job start Tue Mar 31 2020 16:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45209 * 1 3 3 C 1.34230 * 116.99510 * 2 1 4 4 O 1.20820 * 120.00113 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99924 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.46885 * 179.97438 * 5 3 2 7 7 N 1.46509 * 109.46588 * 179.97438 * 6 5 3 8 8 C 1.36933 * 120.00178 * 275.41835 * 7 6 5 9 9 H 1.08008 * 119.99662 * 34.01787 * 8 7 6 10 10 C 1.38812 * 120.00323 * 214.01995 * 8 7 6 11 11 N 1.31621 * 119.99444 * 23.35544 * 10 8 7 12 12 Si 1.86799 * 120.00038 * 203.35397 * 10 8 7 13 13 H 1.48506 * 109.46784 * 60.00104 * 12 10 8 14 14 H 1.48497 * 109.46823 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47534 * 300.00071 * 12 10 8 16 16 C 1.46500 * 119.99661 * 95.42320 * 7 6 5 17 17 C 1.50706 * 109.46869 * 269.99580 * 16 7 6 18 18 C 1.38222 * 119.61655 * 95.00231 * 17 16 7 19 19 C 1.38632 * 119.15852 * 179.97438 * 18 17 16 20 20 C 1.38668 * 118.42272 * 359.97438 * 19 18 17 21 21 C 1.50699 * 120.42026 * 180.02562 * 20 19 18 22 22 F 1.39898 * 109.47152 * 90.00606 * 21 20 19 23 23 F 1.39898 * 109.47106 * 210.00226 * 21 20 19 24 24 F 1.39900 * 109.46948 * 330.00323 * 21 20 19 25 25 C 1.38185 * 119.16472 * 0.02562 * 20 19 18 26 26 N 1.31858 * 119.61791 * 274.72660 * 17 16 7 27 27 H 1.08995 * 109.47290 * 300.00312 * 1 2 3 28 28 H 1.08998 * 109.46743 * 60.00695 * 1 2 3 29 29 H 1.09003 * 109.46524 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46795 * 59.99521 * 5 3 2 31 31 H 1.08997 * 109.46748 * 300.00039 * 5 3 2 32 32 H 1.08997 * 109.47392 * 60.00094 * 6 5 3 33 33 H 1.08997 * 109.47002 * 299.99447 * 6 5 3 34 34 H 0.97004 * 119.99266 * 179.97438 * 11 10 8 35 35 H 1.08998 * 109.46979 * 149.99914 * 16 7 6 36 36 H 1.08995 * 109.47602 * 29.99405 * 16 7 6 37 37 H 1.07998 * 120.42065 * 359.95837 * 18 17 16 38 38 H 1.08002 * 120.78501 * 180.02562 * 19 18 17 39 39 H 1.07993 * 119.62179 * 179.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2750 0.0006 6 6 4.0000 2.7423 -0.0002 7 7 5.4631 2.8190 0.0010 8 6 6.1517 2.7439 1.1822 9 1 5.7816 2.1226 1.9844 10 6 7.3253 3.4663 1.3486 11 7 7.5471 4.5386 0.6182 12 14 8.5896 2.9167 2.6090 13 1 9.0558 1.5463 2.2773 14 1 9.7446 3.8499 2.5909 15 1 7.9739 2.9165 3.9603 16 6 6.1893 2.9761 -1.2616 17 6 6.5125 1.6173 -1.8276 18 6 5.6684 1.0483 -2.7627 19 6 5.9752 -0.2018 -3.2774 20 6 7.1249 -0.8355 -2.8308 21 6 7.5017 -2.1950 -3.3606 22 9 8.3086 -2.0467 -4.4938 23 9 8.2037 -2.9005 -2.3775 24 9 6.3426 -2.8999 -3.7025 25 6 7.9208 -0.2047 -1.8937 26 7 7.6002 0.9873 -1.4291 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 3.9564 0.7807 -0.8891 31 1 3.9557 0.7811 0.8908 32 1 3.6099 3.2369 0.8893 33 1 3.6107 3.2357 -0.8907 34 1 8.3670 5.0436 0.7348 35 1 7.1141 3.5246 -1.0830 36 1 5.5711 3.5271 -1.9703 37 1 4.7811 1.5709 -3.0879 38 1 5.3344 -0.6706 -4.0095 39 1 8.8176 -0.6916 -1.5404 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879471594.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:09 Heat of formation + Delta-G solvation = -194.292285 kcal Electronic energy + Delta-G solvation = -28963.895238 eV Core-core repulsion = 24264.063913 eV Total energy + Delta-G solvation = -4699.831325 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -51.17024 -48.68406 -48.63432 -41.48987 -41.21649 -38.03439 -37.31929 -34.14887 -33.99075 -33.11708 -31.54921 -28.95067 -28.38721 -26.57692 -25.65254 -24.58466 -23.36855 -22.34090 -21.47812 -19.51464 -19.49722 -19.38325 -18.90590 -18.56004 -17.57461 -17.54548 -17.37265 -16.86378 -16.42791 -15.82354 -15.54187 -15.47207 -15.42243 -15.27242 -15.08262 -14.90565 -14.84203 -14.79307 -14.54468 -14.35983 -14.09045 -14.02691 -13.63815 -13.26104 -13.08895 -12.87393 -12.71404 -12.56541 -12.49075 -12.08653 -12.01263 -11.83442 -11.70712 -11.53081 -10.99521 -10.52796 -10.37674 -10.10305 -8.70107 -7.86722 -5.42508 -0.19059 0.27763 1.19395 1.47542 1.53223 1.58212 1.62906 1.80003 2.50849 2.64703 2.68843 3.00506 3.27848 3.42216 3.48950 3.68371 3.79913 3.87999 3.99362 4.13009 4.16196 4.32367 4.35503 4.36087 4.48434 4.63684 4.67950 4.73168 4.79413 4.97463 4.98053 5.08819 5.24077 5.40730 5.57945 5.68078 5.74117 6.42258 6.75826 7.10342 7.13982 7.79200 8.26818 9.11909 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.007317 B = 0.005475 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3825.987334 B = 5112.757329 C = 7912.999871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.473 3.527 4 O -0.536 6.536 5 C -0.123 4.123 6 C 0.163 3.837 7 N -0.575 5.575 8 C -0.265 4.265 9 H 0.056 0.944 10 C -0.013 4.013 11 N -0.905 5.905 12 Si 0.945 3.055 13 H -0.283 1.283 14 H -0.294 1.294 15 H -0.278 1.278 16 C 0.173 3.827 17 C 0.153 3.847 18 C -0.175 4.175 19 C -0.019 4.019 20 C -0.262 4.262 21 C 0.527 3.473 22 F -0.178 7.178 23 F -0.179 7.179 24 F -0.174 7.174 25 C 0.142 3.858 26 N -0.496 5.496 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.095 0.905 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.253 0.747 35 H 0.087 0.913 36 H 0.067 0.933 37 H 0.163 0.837 38 H 0.173 0.827 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.092 -13.070 -9.442 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.163 4.163 6 C 0.037 3.963 7 N -0.294 5.294 8 C -0.394 4.394 9 H 0.073 0.927 10 C -0.211 4.211 11 N -0.547 5.547 12 Si 0.774 3.226 13 H -0.209 1.209 14 H -0.220 1.220 15 H -0.204 1.204 16 C 0.046 3.954 17 C 0.014 3.986 18 C -0.195 4.195 19 C -0.044 4.044 20 C -0.266 4.266 21 C 0.472 3.528 22 F -0.160 7.160 23 F -0.161 7.161 24 F -0.156 7.156 25 C -0.017 4.017 26 N -0.205 5.205 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.149 0.851 30 H 0.125 0.875 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.180 0.820 38 H 0.191 0.809 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.661 -12.217 -8.797 16.462 hybrid contribution 0.314 -0.691 0.207 0.787 sum -6.348 -12.907 -8.589 16.753 Atomic orbital electron populations 1.23544 0.74955 1.05596 1.02536 1.86539 1.25036 1.33051 1.83816 1.24032 0.92253 0.81092 0.70955 1.90630 1.67863 1.37221 1.46828 1.22090 0.85829 1.02856 1.05521 1.20662 0.83530 0.91494 1.00661 1.43775 1.00008 1.83742 1.01868 1.19004 1.06032 1.21097 0.93311 0.92672 1.25473 1.01594 0.94443 0.99618 1.70038 1.25966 1.15118 1.43620 0.85701 0.79509 0.77760 0.79585 1.20917 1.21988 1.20437 1.20090 1.00004 0.89133 0.86164 1.23008 0.87985 0.98550 0.89096 1.22209 1.02088 0.96349 0.98872 1.21613 0.93325 0.93332 0.96140 1.21000 1.02449 0.96532 1.06657 1.17895 0.74480 0.85144 0.75257 1.93218 1.74187 1.95875 1.52700 1.93188 1.79643 1.80815 1.62410 1.93185 1.49108 1.80785 1.92480 1.22884 0.98034 0.90284 0.90496 1.67835 1.19077 1.08628 1.24975 0.92241 0.91690 0.85082 0.87544 0.88704 0.94143 0.92127 0.93756 0.89571 0.91515 0.81973 0.80929 0.81677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.56 113.37 1.20 1.69 16 2 O -0.37 -9.62 10.57 -51.42 -0.54 -10.16 16 3 C 0.47 14.52 7.96 71.24 0.57 15.09 16 4 O -0.54 -18.96 15.73 21.98 0.35 -18.61 16 5 C -0.12 -3.95 6.11 29.85 0.18 -3.77 16 6 C 0.16 6.27 5.01 86.38 0.43 6.71 16 7 N -0.58 -25.88 2.44 -706.33 -1.73 -27.60 16 8 C -0.26 -13.60 9.48 84.03 0.80 -12.81 16 9 H 0.06 2.86 7.93 -2.91 -0.02 2.84 16 10 C -0.01 -0.66 4.94 84.86 0.42 -0.24 16 11 N -0.90 -50.27 11.34 21.65 0.25 -50.02 16 12 Si 0.95 44.25 29.61 68.60 2.03 46.28 16 13 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 15 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 16 C 0.17 7.31 5.64 85.64 0.48 7.79 16 17 C 0.15 5.57 6.29 42.55 0.27 5.84 16 18 C -0.17 -4.75 8.25 22.36 0.18 -4.56 16 19 C -0.02 -0.44 9.52 22.47 0.21 -0.22 16 20 C -0.26 -6.88 5.46 -19.77 -0.11 -6.98 16 21 C 0.53 12.28 3.38 71.24 0.24 12.52 16 22 F -0.18 -4.19 17.30 44.97 0.78 -3.41 16 23 F -0.18 -4.38 16.49 44.97 0.74 -3.64 16 24 F -0.17 -3.80 16.53 44.97 0.74 -3.06 16 25 C 0.14 4.50 10.56 84.67 0.89 5.39 16 26 N -0.50 -19.49 10.27 -183.88 -1.89 -21.38 16 27 H 0.06 1.12 8.13 -2.39 -0.02 1.10 16 28 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.11 3.15 6.51 -2.39 -0.02 3.13 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.04 1.72 8.04 -2.39 -0.02 1.70 16 33 H 0.06 2.18 7.79 -2.39 -0.02 2.17 16 34 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 35 H 0.09 4.39 5.33 -2.39 -0.01 4.38 16 36 H 0.07 2.51 7.76 -2.39 -0.02 2.49 16 37 H 0.16 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.17 2.80 7.69 -2.91 -0.02 2.78 16 39 H 0.17 4.67 7.61 -2.91 -0.02 4.65 16 Total: -1.00 -62.85 352.35 7.59 -55.26 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.10 Total: 9.90 kcal Atomic # 6 Polarization: 20.68 SS G_CDS: 5.77 Total: 26.45 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -3.37 Total: -99.01 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.20 Total: -28.77 kcal Atomic # 9 Polarization: -12.37 SS G_CDS: 2.26 Total: -10.11 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -62.85 7.59 -55.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471594.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.033 kcal (2) G-P(sol) polarization free energy of solvation -62.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds