Wall clock time and date at job start Tue Mar 31 2020 16:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00200 * 2 1 4 4 O 1.20829 * 119.99789 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47018 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47076 * 180.02562 * 6 5 3 8 8 C 1.36945 * 119.99630 * 265.95369 * 7 6 5 9 9 H 1.08001 * 119.99994 * 326.19323 * 8 7 6 10 10 C 1.38807 * 120.00018 * 146.19609 * 8 7 6 11 11 N 1.31625 * 120.00366 * 156.53454 * 10 8 7 12 12 Si 1.86801 * 120.00127 * 336.53516 * 10 8 7 13 13 H 1.48503 * 109.47335 * 95.56361 * 12 10 8 14 14 H 1.48501 * 109.47307 * 215.56336 * 12 10 8 15 15 H 1.48504 * 109.47098 * 335.56385 * 12 10 8 16 16 C 1.46495 * 120.00622 * 85.95602 * 7 6 5 17 17 C 1.50699 * 109.47333 * 83.70316 * 16 7 6 18 18 C 1.38665 * 120.41677 * 4.02260 * 17 16 7 19 19 C 1.38630 * 118.42270 * 179.75204 * 18 17 16 20 20 C 1.38231 * 119.15886 * 0.24987 * 19 18 17 21 21 N 1.31858 * 120.76267 * 0.02715 * 20 19 18 22 22 C 1.31892 * 121.72651 * 359.97438 * 21 20 19 23 23 C 1.50694 * 119.61873 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47215 * 0.86703 * 23 22 21 25 25 F 1.39903 * 109.47292 * 120.86590 * 23 22 21 26 26 F 1.39901 * 109.47332 * 240.86641 * 23 22 21 27 27 H 1.09000 * 109.46967 * 59.99920 * 1 2 3 28 28 H 1.09000 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46985 * 300.00232 * 1 2 3 30 30 H 1.09003 * 109.46935 * 60.00536 * 5 3 2 31 31 H 1.08996 * 109.47615 * 299.99959 * 5 3 2 32 32 H 1.09003 * 109.47086 * 59.99950 * 6 5 3 33 33 H 1.09005 * 109.46907 * 300.00550 * 6 5 3 34 34 H 0.96993 * 120.00363 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46813 * 323.70456 * 16 7 6 36 36 H 1.09000 * 109.47360 * 203.70852 * 16 7 6 37 37 H 1.08000 * 120.79398 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.42645 * 180.27738 * 19 18 17 39 39 H 1.07998 * 119.61944 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1426 2.9375 1.1841 9 1 5.7098 3.4949 2.0017 10 6 7.3875 2.3418 1.3325 11 7 8.2346 2.8015 2.2289 12 14 7.8608 0.8875 0.2598 13 1 8.6374 1.3681 -0.9112 14 1 8.6892 -0.0600 1.0480 15 1 6.6322 0.1984 -0.2101 16 6 6.1994 2.7680 -1.2644 17 6 6.2437 4.1450 -1.8752 18 6 5.7124 5.2314 -1.1968 19 6 5.7801 6.4802 -1.7949 20 6 6.3662 6.5992 -3.0411 21 7 6.8563 5.5428 -3.6596 22 6 6.8092 4.3399 -3.1209 23 6 7.3835 3.1653 -3.8702 24 9 7.9188 3.6042 -5.0859 25 9 8.3921 2.5713 -3.1039 26 9 6.3728 2.2298 -4.1163 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9564 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6102 3.2359 0.8911 33 1 3.6108 3.2363 -0.8889 34 1 9.1046 2.3855 2.3323 35 1 5.6989 2.0829 -1.9488 36 1 7.2155 2.4194 -1.0800 37 1 5.2606 5.1084 -0.2236 38 1 5.3805 7.3492 -1.2934 39 1 6.4232 7.5686 -3.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879472465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:16 Heat of formation + Delta-G solvation = -166.956478 kcal Electronic energy + Delta-G solvation = -29757.000212 eV Core-core repulsion = 25058.354257 eV Total energy + Delta-G solvation = -4698.645956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.92981 -47.43751 -47.37739 -40.27944 -40.10508 -36.92213 -36.15203 -32.64479 -32.36074 -32.25652 -30.24183 -27.75684 -26.85654 -25.90205 -24.74480 -22.69735 -22.16906 -21.21787 -19.93355 -18.37571 -18.29194 -18.25359 -17.51833 -17.07504 -16.46778 -16.33637 -16.10135 -15.60300 -15.33738 -14.55838 -14.32657 -14.27102 -14.08084 -13.87145 -13.83839 -13.71212 -13.53770 -13.51388 -13.37831 -12.97164 -12.90806 -12.49490 -12.37168 -12.19929 -12.15856 -11.66593 -11.50913 -11.30898 -10.77631 -10.72897 -10.48581 -10.31320 -10.23953 -9.79034 -9.56309 -9.48822 -8.85915 -8.68147 -7.30528 -6.20187 -3.64381 0.97464 1.48179 2.44098 2.75337 2.90628 3.21814 3.35560 3.37637 3.72815 3.77697 4.20552 4.32343 4.52820 4.64628 4.81345 5.04557 5.09184 5.13219 5.15390 5.17256 5.26437 5.28494 5.47148 5.49943 5.55502 5.61553 5.81545 5.87090 6.01547 6.12754 6.33145 6.38988 6.50373 6.55550 6.66719 6.79116 7.73747 7.84355 7.95101 8.12921 8.67882 9.45684 9.78527 10.93878 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.005150 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.126409 B = 5435.184985 C = 6227.707733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.465 3.535 4 O -0.514 6.514 5 C -0.140 4.140 6 C 0.159 3.841 7 N -0.592 5.592 8 C -0.286 4.286 9 H 0.090 0.910 10 C 0.044 3.956 11 N -0.886 5.886 12 Si 0.853 3.147 13 H -0.271 1.271 14 H -0.295 1.295 15 H -0.264 1.264 16 C 0.148 3.852 17 C -0.080 4.080 18 C -0.042 4.042 19 C -0.146 4.146 20 C 0.083 3.917 21 N -0.451 5.451 22 C 0.016 3.984 23 C 0.519 3.481 24 F -0.168 7.168 25 F -0.168 7.168 26 F -0.175 7.175 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.060 0.940 30 H 0.095 0.905 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.267 0.733 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.161 0.839 38 H 0.140 0.860 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.380 0.498 -8.441 11.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.308 3.692 4 O -0.402 6.402 5 C -0.180 4.180 6 C 0.033 3.967 7 N -0.312 5.312 8 C -0.414 4.414 9 H 0.107 0.893 10 C -0.158 4.158 11 N -0.525 5.525 12 Si 0.681 3.319 13 H -0.198 1.198 14 H -0.223 1.223 15 H -0.188 1.188 16 C 0.022 3.978 17 C -0.085 4.085 18 C -0.068 4.068 19 C -0.166 4.166 20 C -0.076 4.076 21 N -0.159 5.159 22 C -0.122 4.122 23 C 0.464 3.536 24 F -0.149 7.149 25 F -0.149 7.149 26 F -0.156 7.156 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.179 0.821 38 H 0.158 0.842 39 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.031 0.843 -9.154 12.206 hybrid contribution 0.001 -1.167 0.181 1.181 sum -8.030 -0.324 -8.973 12.045 Atomic orbital electron populations 1.23185 0.77294 1.03182 1.02279 1.86574 1.22830 1.34471 1.84341 1.24361 0.92602 0.80880 0.71367 1.90623 1.67475 1.36316 1.45801 1.22417 0.85150 1.04613 1.05819 1.20885 0.83826 0.90672 1.01333 1.44166 1.00737 1.84483 1.01819 1.18816 1.00946 1.29777 0.91864 0.89266 1.25390 0.96615 0.97438 0.96364 1.69846 1.06875 1.39701 1.36101 0.87311 0.79096 0.85016 0.80433 1.19841 1.22266 1.18793 1.20635 0.99023 0.89904 0.88283 1.21872 0.93513 1.01017 0.92059 1.21774 0.94495 0.90275 1.00266 1.22416 0.99027 0.98876 0.96264 1.22597 0.95697 0.96456 0.92871 1.67075 1.15271 0.97990 1.35577 1.20647 1.04579 0.92570 0.94421 1.17998 0.76076 0.82180 0.77351 1.93187 1.86576 1.89363 1.45792 1.93285 1.61396 1.84982 1.75225 1.93183 1.60468 1.67561 1.94397 0.92206 0.88575 0.92100 0.88660 0.87112 0.91022 0.93121 0.92308 0.91499 0.89128 0.82132 0.84206 0.82205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.37 -5.19 10.56 -39.24 -0.41 -5.60 16 3 C 0.46 7.35 7.96 36.01 0.29 7.64 16 4 O -0.51 -9.06 15.73 -18.75 -0.29 -9.35 16 5 C -0.14 -2.27 6.14 -27.88 -0.17 -2.44 16 6 C 0.16 2.82 4.28 -4.04 -0.02 2.81 16 7 N -0.59 -12.21 0.98 -174.61 -0.17 -12.38 16 8 C -0.29 -7.02 9.58 -15.06 -0.14 -7.16 16 9 H 0.09 2.35 8.06 -52.49 -0.42 1.92 16 10 C 0.04 1.17 5.28 -17.43 -0.09 1.08 16 11 N -0.89 -25.11 13.97 55.49 0.78 -24.33 16 12 Si 0.85 20.22 24.94 -169.99 -4.24 15.98 16 13 H -0.27 -6.38 6.00 56.52 0.34 -6.04 16 14 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 15 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 16 C 0.15 2.99 3.44 -5.20 -0.02 2.97 16 17 C -0.08 -1.49 5.84 -104.48 -0.61 -2.10 16 18 C -0.04 -0.72 9.24 -39.28 -0.36 -1.08 16 19 C -0.15 -2.01 10.11 -39.44 -0.40 -2.41 16 20 C 0.08 1.15 11.18 -17.54 -0.20 0.95 16 21 N -0.45 -7.66 9.73 -9.47 -0.09 -7.75 16 22 C 0.02 0.30 6.26 -82.59 -0.52 -0.22 16 23 C 0.52 9.25 2.88 36.00 0.10 9.36 16 24 F -0.17 -2.88 16.85 2.25 0.04 -2.84 16 25 F -0.17 -3.23 15.15 2.25 0.03 -3.20 16 26 F -0.17 -2.94 15.73 2.25 0.04 -2.91 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 30 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 31 H 0.11 1.86 8.14 -51.93 -0.42 1.44 16 32 H 0.07 1.30 7.97 -51.93 -0.41 0.88 16 33 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 34 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.07 1.25 6.76 -51.93 -0.35 0.90 16 36 H 0.09 2.05 2.20 -51.93 -0.11 1.94 16 37 H 0.16 2.84 6.39 -52.49 -0.34 2.51 16 38 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 39 H 0.16 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 341.15 15.07 5.14 5.14 Total: -1.00 -29.41 341.15 -4.47 -33.88 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -4.21 Total: 2.54 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: -1.07 Total: 10.82 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.51 Total: -44.46 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.71 Total: -14.95 kcal Atomic # 9 Polarization: -9.05 SS G_CDS: 0.11 Total: -8.95 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.24 Total: 15.98 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.41 -4.47 -33.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.076 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds