Wall clock time and date at job start Tue Mar 31 2020 16:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34225 * 117.00200 * 2 1 4 4 O 1.20829 * 119.99789 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99869 * 179.97438 * 3 2 1 6 6 C 1.53007 * 109.47018 * 180.02562 * 5 3 2 7 7 N 1.46492 * 109.47076 * 180.02562 * 6 5 3 8 8 C 1.36945 * 119.99630 * 265.95369 * 7 6 5 9 9 H 1.08001 * 119.99994 * 326.19323 * 8 7 6 10 10 C 1.38807 * 120.00018 * 146.19609 * 8 7 6 11 11 N 1.31625 * 120.00366 * 156.53454 * 10 8 7 12 12 Si 1.86801 * 120.00127 * 336.53516 * 10 8 7 13 13 H 1.48503 * 109.47335 * 95.56361 * 12 10 8 14 14 H 1.48501 * 109.47307 * 215.56336 * 12 10 8 15 15 H 1.48504 * 109.47098 * 335.56385 * 12 10 8 16 16 C 1.46495 * 120.00622 * 85.95602 * 7 6 5 17 17 C 1.50699 * 109.47333 * 83.70316 * 16 7 6 18 18 C 1.38665 * 120.41677 * 4.02260 * 17 16 7 19 19 C 1.38630 * 118.42270 * 179.75204 * 18 17 16 20 20 C 1.38231 * 119.15886 * 0.24987 * 19 18 17 21 21 N 1.31858 * 120.76267 * 0.02715 * 20 19 18 22 22 C 1.31892 * 121.72651 * 359.97438 * 21 20 19 23 23 C 1.50694 * 119.61873 * 179.97438 * 22 21 20 24 24 F 1.39901 * 109.47215 * 0.86703 * 23 22 21 25 25 F 1.39903 * 109.47292 * 120.86590 * 23 22 21 26 26 F 1.39901 * 109.47332 * 240.86641 * 23 22 21 27 27 H 1.09000 * 109.46967 * 59.99920 * 1 2 3 28 28 H 1.09000 * 109.47485 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46985 * 300.00232 * 1 2 3 30 30 H 1.09003 * 109.46935 * 60.00536 * 5 3 2 31 31 H 1.08996 * 109.47615 * 299.99959 * 5 3 2 32 32 H 1.09003 * 109.47086 * 59.99950 * 6 5 3 33 33 H 1.09005 * 109.46907 * 300.00550 * 6 5 3 34 34 H 0.96993 * 120.00363 * 180.02562 * 11 10 8 35 35 H 1.09000 * 109.46813 * 323.70456 * 16 7 6 36 36 H 1.09000 * 109.47360 * 203.70852 * 16 7 6 37 37 H 1.08000 * 120.79398 * 0.02562 * 18 17 16 38 38 H 1.07998 * 120.42645 * 180.27738 * 19 18 17 39 39 H 1.07998 * 119.61944 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4632 2.8186 0.0011 8 6 6.1426 2.9375 1.1841 9 1 5.7098 3.4949 2.0017 10 6 7.3875 2.3418 1.3325 11 7 8.2346 2.8015 2.2289 12 14 7.8608 0.8875 0.2598 13 1 8.6374 1.3681 -0.9112 14 1 8.6892 -0.0600 1.0480 15 1 6.6322 0.1984 -0.2101 16 6 6.1994 2.7680 -1.2644 17 6 6.2437 4.1450 -1.8752 18 6 5.7124 5.2314 -1.1968 19 6 5.7801 6.4802 -1.7949 20 6 6.3662 6.5992 -3.0411 21 7 6.8563 5.5428 -3.6596 22 6 6.8092 4.3399 -3.1209 23 6 7.3835 3.1653 -3.8702 24 9 7.9188 3.6042 -5.0859 25 9 8.3921 2.5713 -3.1039 26 9 6.3728 2.2298 -4.1163 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 3.9564 0.7805 -0.8892 31 1 3.9558 0.7808 0.8908 32 1 3.6102 3.2359 0.8911 33 1 3.6108 3.2363 -0.8889 34 1 9.1046 2.3855 2.3323 35 1 5.6989 2.0829 -1.9488 36 1 7.2155 2.4194 -1.0800 37 1 5.2606 5.1084 -0.2236 38 1 5.3805 7.3492 -1.2934 39 1 6.4232 7.5686 -3.5138 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879472465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:15 Heat of formation + Delta-G solvation = -183.251113 kcal Electronic energy + Delta-G solvation = -29757.706801 eV Core-core repulsion = 25058.354257 eV Total energy + Delta-G solvation = -4699.352544 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.31326 -48.82898 -48.75495 -41.53198 -41.34693 -38.41918 -37.43407 -34.17804 -33.96292 -33.58172 -31.74923 -28.82615 -28.31395 -27.23954 -26.33366 -24.06592 -23.48029 -22.65638 -21.33957 -19.72352 -19.67876 -19.63875 -19.01200 -18.54755 -17.79181 -17.56525 -17.43368 -17.06872 -16.64928 -15.99752 -15.74557 -15.66128 -15.48028 -15.31681 -15.23889 -15.02877 -14.91647 -14.88051 -14.77667 -14.39645 -14.19740 -14.14117 -13.72817 -13.57210 -13.36571 -13.15975 -12.82532 -12.71856 -12.53778 -12.25435 -11.87979 -11.72969 -11.67490 -11.52925 -10.84941 -10.75993 -10.67463 -10.10720 -9.08087 -8.22721 -5.61649 -0.28522 0.21788 1.18912 1.32000 1.40321 1.43522 1.48552 1.78265 2.38365 2.43073 2.49782 2.86603 2.89205 3.22107 3.27751 3.56180 3.88589 3.93754 4.01115 4.05989 4.14955 4.21756 4.31375 4.32984 4.35179 4.37084 4.48676 4.62550 4.67270 4.72393 4.92533 5.13891 5.16754 5.26866 5.40452 5.57649 5.85859 6.14334 6.62643 6.73137 6.83749 7.52367 7.91005 8.95112 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.009829 B = 0.005150 C = 0.004495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.126409 B = 5435.184985 C = 6227.707733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.370 6.370 3 C 0.473 3.527 4 O -0.535 6.535 5 C -0.136 4.136 6 C 0.165 3.835 7 N -0.596 5.596 8 C -0.256 4.256 9 H 0.064 0.936 10 C -0.005 4.005 11 N -0.935 5.935 12 Si 0.899 3.101 13 H -0.272 1.272 14 H -0.309 1.309 15 H -0.243 1.243 16 C 0.150 3.850 17 C -0.100 4.100 18 C -0.059 4.059 19 C -0.128 4.128 20 C 0.092 3.908 21 N -0.467 5.467 22 C 0.004 3.996 23 C 0.519 3.481 24 F -0.165 7.165 25 F -0.180 7.180 26 F -0.170 7.170 27 H 0.063 0.937 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.262 0.738 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.148 0.852 38 H 0.181 0.819 39 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 1.108 -10.095 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.286 6.286 3 C 0.317 3.683 4 O -0.425 6.425 5 C -0.176 4.176 6 C 0.039 3.961 7 N -0.317 5.317 8 C -0.385 4.385 9 H 0.082 0.918 10 C -0.203 4.203 11 N -0.578 5.578 12 Si 0.727 3.273 13 H -0.200 1.200 14 H -0.238 1.238 15 H -0.166 1.166 16 C 0.023 3.977 17 C -0.105 4.105 18 C -0.085 4.085 19 C -0.147 4.147 20 C -0.067 4.067 21 N -0.175 5.175 22 C -0.134 4.134 23 C 0.463 3.537 24 F -0.146 7.146 25 F -0.161 7.161 26 F -0.152 7.152 27 H 0.082 0.918 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.166 0.834 38 H 0.198 0.802 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.813 1.419 -10.848 14.696 hybrid contribution 0.373 -1.217 0.656 1.432 sum -9.441 0.202 -10.191 13.894 Atomic orbital electron populations 1.23541 0.74937 1.05582 1.02547 1.86537 1.25070 1.33197 1.83785 1.24024 0.92232 0.81113 0.70908 1.90619 1.67852 1.37071 1.46931 1.22197 0.86089 1.03182 1.06122 1.20809 0.81842 0.91889 1.01530 1.44094 1.01732 1.84899 1.00935 1.18670 1.00291 1.27256 0.92255 0.91803 1.25837 0.97107 0.99589 0.97756 1.69953 1.07438 1.41440 1.38994 0.86556 0.79350 0.82513 0.78866 1.19961 1.23814 1.16593 1.20520 0.97643 0.91452 0.88050 1.21678 0.95478 1.00529 0.92857 1.21805 0.95201 0.91487 1.00031 1.22824 0.97239 0.98696 0.95964 1.23405 0.93443 0.97226 0.92643 1.67153 1.16037 0.98153 1.36184 1.20589 1.05244 0.93197 0.94361 1.18047 0.75907 0.82334 0.77370 1.93185 1.86563 1.89326 1.45535 1.93257 1.62016 1.85245 1.75625 1.93182 1.60169 1.67467 1.94358 0.91822 0.85188 0.92010 0.87583 0.87643 0.91775 0.91974 0.92838 0.90215 0.91587 0.83435 0.80202 0.77739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.56 113.37 1.20 1.69 16 2 O -0.37 -9.70 10.56 -51.37 -0.54 -10.24 16 3 C 0.47 14.23 7.96 71.24 0.57 14.80 16 4 O -0.53 -18.10 15.73 21.96 0.35 -17.76 16 5 C -0.14 -4.24 6.14 29.85 0.18 -4.06 16 6 C 0.16 5.72 4.28 86.38 0.37 6.09 16 7 N -0.60 -24.41 0.98 -706.35 -0.69 -25.10 16 8 C -0.26 -12.74 9.58 84.03 0.81 -11.93 16 9 H 0.06 3.47 8.06 -2.91 -0.02 3.45 16 10 C -0.01 -0.27 5.28 84.86 0.45 0.18 16 11 N -0.94 -54.86 13.97 21.65 0.30 -54.56 16 12 Si 0.90 42.42 24.94 68.60 1.71 44.13 16 13 H -0.27 -12.79 6.00 99.48 0.60 -12.19 16 14 H -0.31 -15.16 7.11 99.48 0.71 -14.45 16 15 H -0.24 -10.43 7.11 99.48 0.71 -9.72 16 16 C 0.15 5.95 3.44 85.63 0.29 6.25 16 17 C -0.10 -3.66 5.84 -19.78 -0.12 -3.78 16 18 C -0.06 -1.93 9.24 22.47 0.21 -1.72 16 19 C -0.13 -3.09 10.11 22.36 0.23 -2.86 16 20 C 0.09 2.19 11.18 84.69 0.95 3.14 16 21 N -0.47 -14.73 9.73 -183.88 -1.79 -16.51 16 22 C 0.00 0.12 6.26 42.53 0.27 0.39 16 23 C 0.52 18.06 2.88 71.23 0.21 18.27 16 24 F -0.16 -5.48 16.85 44.97 0.76 -4.72 16 25 F -0.18 -6.92 15.15 44.97 0.68 -6.24 16 26 F -0.17 -5.56 15.73 44.97 0.71 -4.85 16 27 H 0.06 1.14 8.13 -2.39 -0.02 1.12 16 28 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 1.14 8.13 -2.38 -0.02 1.12 16 30 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 31 H 0.11 3.44 8.14 -2.39 -0.02 3.42 16 32 H 0.06 2.31 7.97 -2.39 -0.02 2.29 16 33 H 0.06 2.03 8.06 -2.38 -0.02 2.01 16 34 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 35 H 0.08 2.89 6.76 -2.39 -0.02 2.88 16 36 H 0.07 2.98 2.20 -2.39 -0.01 2.98 16 37 H 0.15 5.15 6.39 -2.91 -0.02 5.13 16 38 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 39 H 0.21 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -65.01 341.15 8.07 -56.93 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: 0.99 Total: 12.49 kcal Atomic # 6 Polarization: 20.84 SS G_CDS: 5.60 Total: 26.44 kcal Atomic # 7 Polarization: -94.00 SS G_CDS: -2.18 Total: -96.18 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.20 Total: -28.00 kcal Atomic # 9 Polarization: -17.96 SS G_CDS: 2.15 Total: -15.81 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.71 Total: 44.13 kcal Total: -65.01 8.07 -56.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879472465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.320 kcal (2) G-P(sol) polarization free energy of solvation -65.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds