Wall clock time and date at job start Tue Mar 31 2020 16:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00134 * 2 1 4 4 C 1.53008 * 109.47097 * 270.00099 * 3 2 1 5 5 C 1.50701 * 109.46920 * 180.02562 * 4 3 2 6 6 N 1.29025 * 124.91678 * 89.69857 * 5 4 3 7 7 C 1.31785 * 117.12236 * 179.81066 * 6 5 4 8 8 C 1.33639 * 114.49726 * 0.47009 * 7 6 5 9 9 S 1.70976 * 124.91184 * 269.99654 * 5 4 3 10 10 C 1.34777 * 119.99714 * 179.97438 * 2 1 3 11 11 O 1.21578 * 119.99929 * 179.97438 * 10 2 1 12 12 N 1.34779 * 119.99905 * 0.02562 * 10 2 1 13 13 C 1.39240 * 119.99656 * 185.70851 * 12 10 2 14 14 C 1.39684 * 119.57725 * 175.00282 * 13 12 10 15 15 C 1.38648 * 119.50229 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.66443 * 359.72926 * 15 14 13 17 17 C 1.40569 * 119.12851 * 0.53151 * 16 15 14 18 18 C 1.41343 * 119.78230 * 179.73002 * 17 16 15 19 19 H 1.07997 * 119.99764 * 6.83401 * 18 17 16 20 20 C 1.40027 * 119.99810 * 186.83117 * 18 17 16 21 21 N 1.30745 * 120.00170 * 6.71600 * 20 18 17 22 22 Si 1.86799 * 119.99983 * 186.71025 * 20 18 17 23 23 H 1.48503 * 109.47150 * 265.00951 * 22 20 18 24 24 H 1.48497 * 109.46981 * 25.00554 * 22 20 18 25 25 H 1.48499 * 109.47144 * 145.00781 * 22 20 18 26 26 N 1.31910 * 119.57721 * 355.02087 * 13 12 10 27 27 H 1.09006 * 109.46580 * 270.00444 * 1 2 3 28 28 H 1.08999 * 109.46849 * 29.99620 * 1 2 3 29 29 H 1.08988 * 109.47277 * 149.99980 * 1 2 3 30 30 H 1.09002 * 109.47221 * 29.99641 * 3 2 1 31 31 H 1.09005 * 109.47234 * 150.00120 * 3 2 1 32 32 H 1.09000 * 109.46549 * 300.00373 * 4 3 2 33 33 H 1.09000 * 109.46649 * 60.00091 * 4 3 2 34 34 H 1.08001 * 122.74822 * 180.22548 * 7 6 5 35 35 H 1.08002 * 126.03532 * 179.72249 * 8 7 6 36 36 H 0.96992 * 120.00094 * 5.70399 * 12 10 2 37 37 H 1.08000 * 120.24902 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.66875 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.43284 * 180.26333 * 16 15 14 40 40 H 0.96996 * 120.00398 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2066 3.0152 -1.4425 6 7 4.4922 3.1252 -1.4371 7 6 4.9908 4.3450 -1.4419 8 6 4.0748 5.3181 -1.4419 9 16 2.4824 4.5639 -1.4423 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1673 0.0001 12 7 1.4649 -2.3344 0.0005 13 6 2.1559 -3.5373 0.1210 14 6 1.4434 -4.7342 0.2255 15 6 2.1330 -5.9310 0.3459 16 6 3.5163 -5.9021 0.3532 17 6 4.1754 -4.6647 0.2501 18 6 5.5880 -4.6186 0.2619 19 1 6.1584 -5.5354 0.2384 20 6 6.2479 -3.3843 0.3039 21 7 5.5632 -2.2821 0.4645 22 14 8.1064 -3.3124 0.1306 23 1 8.7288 -3.2906 1.4787 24 1 8.5806 -4.5064 -0.6142 25 1 8.4873 -2.0832 -0.6105 26 7 3.4749 -3.5318 0.1354 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0416 0.9506 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 6.0527 4.5422 -1.4416 35 1 4.2752 6.3794 -1.4411 36 1 0.4986 -2.3365 -0.0833 37 1 0.3635 -4.7274 0.2134 38 1 1.6012 -6.8674 0.4276 39 1 4.0821 -6.8177 0.4413 40 1 6.0203 -1.4271 0.4939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881150541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:57 Heat of formation + Delta-G solvation = 90.508352 kcal Electronic energy + Delta-G solvation = -25656.343757 eV Core-core repulsion = 21985.764676 eV Total energy + Delta-G solvation = -3670.579080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.89175 -39.53429 -37.84033 -35.44558 -34.09447 -33.15224 -32.45813 -30.24232 -29.43578 -28.62674 -26.65538 -25.62377 -24.87641 -23.07283 -21.60005 -21.03799 -19.99277 -19.00408 -18.14285 -17.98386 -16.90310 -16.27305 -15.80667 -15.15460 -15.11071 -14.58859 -14.40864 -14.39849 -14.11414 -13.68508 -13.36921 -13.19728 -13.02586 -12.73970 -12.68351 -12.28893 -12.12995 -11.87519 -11.84507 -11.65457 -11.11227 -10.92565 -10.87162 -10.59445 -10.40938 -9.89902 -9.67670 -9.59693 -9.52506 -9.10127 -9.03222 -8.94248 -8.20004 -7.90616 -7.15558 -6.89267 -6.10572 -4.30900 0.59154 1.23925 1.61675 2.76251 2.89948 3.10488 3.18202 3.24164 3.27100 3.33219 4.08415 4.14054 4.22374 4.46651 4.95982 5.00266 5.02677 5.08909 5.15382 5.17821 5.35288 5.45876 5.55197 5.68143 5.97594 6.02240 6.10310 6.15290 6.19146 6.50284 6.59210 6.84364 6.90291 6.93626 7.26635 7.37496 7.66792 7.71357 7.76075 7.86985 8.21728 8.33347 8.65060 8.85816 9.12075 9.58013 10.32301 10.55792 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003822 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.295302 B = 7323.856222 C = 9575.845567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.644 5.644 3 C 0.150 3.850 4 C -0.063 4.063 5 C 0.070 3.930 6 N -0.466 5.466 7 C 0.044 3.956 8 C -0.267 4.267 9 S 0.100 5.900 10 C 0.666 3.334 11 O -0.455 6.455 12 N -0.672 5.672 13 C 0.386 3.614 14 C -0.359 4.359 15 C -0.035 4.035 16 C -0.308 4.308 17 C 0.274 3.726 18 C -0.427 4.427 19 H 0.082 0.918 20 C 0.060 3.940 21 N -0.652 5.652 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.263 1.263 25 H -0.277 1.277 26 N -0.474 5.474 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.395 0.605 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.558 15.350 -2.690 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.387 5.387 3 C 0.024 3.976 4 C -0.106 4.106 5 C -0.209 4.209 6 N -0.179 5.179 7 C -0.107 4.107 8 C -0.406 4.406 9 S 0.354 5.646 10 C 0.366 3.634 11 O -0.318 6.318 12 N -0.322 5.322 13 C 0.146 3.854 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.149 3.851 18 C -0.457 4.457 19 H 0.100 0.900 20 C -0.170 4.170 21 N -0.270 5.270 22 Si 0.718 3.282 23 H -0.198 1.198 24 H -0.187 1.187 25 H -0.202 1.202 26 N -0.193 5.193 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.230 0.770 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.779 16.299 -2.704 18.709 hybrid contribution 0.590 -0.380 -0.111 0.711 sum -8.189 15.919 -2.814 18.121 Atomic orbital electron populations 1.21635 0.81131 1.02230 1.01208 1.47241 1.05511 1.04969 1.80942 1.21040 0.98557 0.84019 0.93960 1.20785 0.98794 0.90591 1.00440 1.27097 0.92321 0.99351 1.02100 1.66333 1.11110 1.25083 1.15410 1.21904 1.01685 0.85921 1.01195 1.27036 0.94540 1.04896 1.14106 1.83911 1.10562 1.01520 1.68654 1.16375 0.86491 0.80017 0.80550 1.91379 1.08459 1.83503 1.48497 1.42711 1.09234 1.03962 1.76312 1.18323 0.90891 0.82534 0.93612 1.20408 0.97366 0.92428 1.28309 1.20540 0.94097 0.95522 0.95793 1.21617 0.93843 0.98448 1.19169 1.18360 0.93449 0.85608 0.87706 1.19557 0.90088 0.93356 1.42736 0.90017 1.26119 0.99578 0.95904 0.95366 1.70205 1.35507 0.98016 1.23234 0.86547 0.83980 0.78814 0.78903 1.19845 1.18738 1.20197 1.68610 1.01957 1.28346 1.20337 0.93145 0.91542 0.91847 0.91182 0.88854 0.87740 0.89914 0.80794 0.80743 0.77041 0.89245 0.88673 0.88625 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.25 59.85 0.61 1.44 16 2 N -0.64 -9.68 2.87 -187.34 -0.54 -10.22 16 3 C 0.15 2.08 5.39 -4.04 -0.02 2.06 16 4 C -0.06 -0.83 6.12 -27.88 -0.17 -1.00 16 5 C 0.07 0.92 6.64 -13.46 -0.09 0.83 16 6 N -0.47 -7.03 10.54 -11.86 -0.13 -7.16 16 7 C 0.04 0.52 11.35 -19.18 -0.22 0.30 16 8 C -0.27 -2.54 11.37 29.12 0.33 -2.21 16 9 S 0.10 0.97 23.18 -107.50 -2.49 -1.52 16 10 C 0.67 13.85 8.24 -86.92 -0.72 13.14 16 11 O -0.46 -11.77 11.84 5.30 0.06 -11.70 16 12 N -0.67 -13.59 5.26 -15.79 -0.08 -13.67 16 13 C 0.39 9.61 7.43 -155.00 -1.15 8.46 16 14 C -0.36 -8.19 9.95 -38.89 -0.39 -8.57 16 15 C -0.04 -0.82 10.15 -39.38 -0.40 -1.21 16 16 C -0.31 -7.90 9.83 -38.66 -0.38 -8.28 16 17 C 0.27 7.86 6.52 -85.00 -0.55 7.30 16 18 C -0.43 -12.03 9.13 -37.73 -0.34 -12.38 16 19 H 0.08 2.16 7.86 -52.49 -0.41 1.74 16 20 C 0.06 1.63 5.47 -17.34 -0.09 1.54 16 21 N -0.65 -18.61 9.24 55.55 0.51 -18.10 16 22 Si 0.89 19.97 29.57 -169.99 -5.03 14.95 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 N -0.47 -13.60 5.78 -10.26 -0.06 -13.66 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.06 0.59 6.29 -51.94 -0.33 0.27 16 30 H 0.07 0.76 8.07 -51.93 -0.42 0.34 16 31 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 32 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 35 H 0.18 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.39 6.20 6.39 -40.82 -0.26 5.94 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 40 H 0.27 7.45 8.29 -40.82 -0.34 7.11 16 LS Contribution 354.56 15.07 5.34 5.34 Total: -1.00 -35.29 354.56 -10.73 -46.02 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -4.74 Total: 8.32 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -3.58 Total: 1.41 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: -0.29 Total: -62.81 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.06 Total: -11.70 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.03 Total: 14.95 kcal Atomic # 16 Polarization: 0.97 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.29 -10.73 -46.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.528 kcal (2) G-P(sol) polarization free energy of solvation -35.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds