Wall clock time and date at job start Tue Mar 31 2020 16:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 120.00134 * 2 1 4 4 C 1.53008 * 109.47097 * 270.00099 * 3 2 1 5 5 C 1.50701 * 109.46920 * 180.02562 * 4 3 2 6 6 N 1.29025 * 124.91678 * 89.69857 * 5 4 3 7 7 C 1.31785 * 117.12236 * 179.81066 * 6 5 4 8 8 C 1.33639 * 114.49726 * 0.47009 * 7 6 5 9 9 S 1.70976 * 124.91184 * 269.99654 * 5 4 3 10 10 C 1.34777 * 119.99714 * 179.97438 * 2 1 3 11 11 O 1.21578 * 119.99929 * 179.97438 * 10 2 1 12 12 N 1.34779 * 119.99905 * 0.02562 * 10 2 1 13 13 C 1.39240 * 119.99656 * 185.70851 * 12 10 2 14 14 C 1.39684 * 119.57725 * 175.00282 * 13 12 10 15 15 C 1.38648 * 119.50229 * 180.02562 * 14 13 12 16 16 C 1.38361 * 118.66443 * 359.72926 * 15 14 13 17 17 C 1.40569 * 119.12851 * 0.53151 * 16 15 14 18 18 C 1.41343 * 119.78230 * 179.73002 * 17 16 15 19 19 H 1.07997 * 119.99764 * 6.83401 * 18 17 16 20 20 C 1.40027 * 119.99810 * 186.83117 * 18 17 16 21 21 N 1.30745 * 120.00170 * 6.71600 * 20 18 17 22 22 Si 1.86799 * 119.99983 * 186.71025 * 20 18 17 23 23 H 1.48503 * 109.47150 * 265.00951 * 22 20 18 24 24 H 1.48497 * 109.46981 * 25.00554 * 22 20 18 25 25 H 1.48499 * 109.47144 * 145.00781 * 22 20 18 26 26 N 1.31910 * 119.57721 * 355.02087 * 13 12 10 27 27 H 1.09006 * 109.46580 * 270.00444 * 1 2 3 28 28 H 1.08999 * 109.46849 * 29.99620 * 1 2 3 29 29 H 1.08988 * 109.47277 * 149.99980 * 1 2 3 30 30 H 1.09002 * 109.47221 * 29.99641 * 3 2 1 31 31 H 1.09005 * 109.47234 * 150.00120 * 3 2 1 32 32 H 1.09000 * 109.46549 * 300.00373 * 4 3 2 33 33 H 1.09000 * 109.46649 * 60.00091 * 4 3 2 34 34 H 1.08001 * 122.74822 * 180.22548 * 7 6 5 35 35 H 1.08002 * 126.03532 * 179.72249 * 8 7 6 36 36 H 0.96992 * 120.00094 * 5.70399 * 12 10 2 37 37 H 1.08000 * 120.24902 * 359.97438 * 14 13 12 38 38 H 1.07998 * 120.66875 * 180.02562 * 15 14 13 39 39 H 1.07999 * 120.43284 * 180.26333 * 16 15 14 40 40 H 0.96996 * 120.00398 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4426 5 6 3.2066 3.0152 -1.4425 6 7 4.4922 3.1252 -1.4371 7 6 4.9908 4.3450 -1.4419 8 6 4.0748 5.3181 -1.4419 9 16 2.4824 4.5639 -1.4423 10 6 2.1389 -1.1672 0.0005 11 8 3.3547 -1.1673 0.0001 12 7 1.4649 -2.3344 0.0005 13 6 2.1559 -3.5373 0.1210 14 6 1.4434 -4.7342 0.2255 15 6 2.1330 -5.9310 0.3459 16 6 3.5163 -5.9021 0.3532 17 6 4.1754 -4.6647 0.2501 18 6 5.5880 -4.6186 0.2619 19 1 6.1584 -5.5354 0.2384 20 6 6.2479 -3.3843 0.3039 21 7 5.5632 -2.2821 0.4645 22 14 8.1064 -3.3124 0.1306 23 1 8.7288 -3.2906 1.4787 24 1 8.5806 -4.5064 -0.6142 25 1 8.4873 -2.0832 -0.6105 26 7 3.4749 -3.5318 0.1354 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8899 -0.5138 30 1 1.6085 2.0284 0.5138 31 1 3.1500 1.1383 0.5138 32 1 3.0416 0.9506 -1.9563 33 1 1.5001 1.8407 -1.9563 34 1 6.0527 4.5422 -1.4416 35 1 4.2752 6.3794 -1.4411 36 1 0.4986 -2.3365 -0.0833 37 1 0.3635 -4.7274 0.2134 38 1 1.6012 -6.8674 0.4276 39 1 4.0821 -6.8177 0.4413 40 1 6.0203 -1.4271 0.4939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881150541.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:56 Heat of formation + Delta-G solvation = 67.537240 kcal Electronic energy + Delta-G solvation = -25657.339859 eV Core-core repulsion = 21985.764676 eV Total energy + Delta-G solvation = -3671.575182 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31687 -40.61319 -39.62043 -36.83243 -35.89174 -34.94613 -33.64410 -32.19140 -30.93198 -29.95241 -27.64801 -27.47933 -26.10968 -24.27448 -23.37989 -22.79546 -20.90663 -20.59033 -19.74340 -18.97329 -18.52189 -17.96515 -16.90672 -16.59404 -16.29984 -16.24422 -16.08103 -15.71918 -15.33826 -15.26439 -14.75339 -14.59412 -14.43023 -14.14467 -13.69022 -13.68476 -13.62298 -13.24476 -13.03263 -12.91555 -12.70203 -12.55794 -12.44804 -12.29713 -12.04254 -11.79992 -11.45341 -10.86440 -10.78868 -10.55784 -10.38879 -9.92233 -9.88235 -9.42949 -9.08480 -8.76007 -8.07639 -6.38181 -0.26426 0.42118 0.77507 0.98099 1.29661 1.37213 1.50278 1.52613 1.70743 1.90851 2.25862 2.55861 3.01961 3.05721 3.32419 3.95929 4.07645 4.08457 4.14545 4.35417 4.36966 4.39466 4.46361 4.55219 4.69527 4.73395 4.82183 4.92622 4.94166 4.98863 5.01521 5.09332 5.20596 5.27871 5.65508 5.74264 5.86465 5.94313 6.01005 6.26729 6.42756 6.83881 6.86777 7.06957 7.16679 7.99725 8.39347 8.57792 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.003822 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.295302 B = 7323.856222 C = 9575.845567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.635 5.635 3 C 0.155 3.845 4 C -0.052 4.052 5 C 0.033 3.967 6 N -0.519 5.519 7 C 0.012 3.988 8 C -0.251 4.251 9 S 0.176 5.824 10 C 0.656 3.344 11 O -0.514 6.514 12 N -0.660 5.660 13 C 0.364 3.636 14 C -0.344 4.344 15 C -0.033 4.033 16 C -0.331 4.331 17 C 0.240 3.760 18 C -0.469 4.469 19 H 0.086 0.914 20 C 0.014 3.986 21 N -0.688 5.688 22 Si 0.969 3.031 23 H -0.262 1.262 24 H -0.253 1.253 25 H -0.280 1.280 26 N -0.511 5.511 27 H 0.065 0.935 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.185 0.815 35 H 0.211 0.789 36 H 0.416 0.584 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.104 0.896 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.519 16.971 -2.860 21.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.376 5.376 3 C 0.029 3.971 4 C -0.094 4.094 5 C -0.244 4.244 6 N -0.234 5.234 7 C -0.138 4.138 8 C -0.390 4.390 9 S 0.430 5.570 10 C 0.356 3.644 11 O -0.382 6.382 12 N -0.312 5.312 13 C 0.124 3.876 14 C -0.370 4.370 15 C -0.057 4.057 16 C -0.354 4.354 17 C 0.115 3.885 18 C -0.500 4.500 19 H 0.104 0.896 20 C -0.212 4.212 21 N -0.307 5.307 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.177 1.177 25 H -0.206 1.206 26 N -0.230 5.230 27 H 0.083 0.917 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.134 0.866 34 H 0.202 0.798 35 H 0.228 0.772 36 H 0.256 0.744 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.122 0.878 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.849 17.937 -2.874 21.689 hybrid contribution 1.235 -0.803 -0.063 1.475 sum -10.614 17.133 -2.937 20.368 Atomic orbital electron populations 1.22005 0.77361 1.04572 1.02920 1.47165 1.07693 1.03334 1.79368 1.21065 0.97100 0.84270 0.94643 1.20596 0.99500 0.89893 0.99411 1.27003 0.92410 1.01144 1.03872 1.66296 1.12929 1.27546 1.16668 1.22136 1.02911 0.85636 1.03086 1.27538 0.94289 1.06222 1.10969 1.83509 1.09099 0.97794 1.66645 1.16720 0.86203 0.81367 0.80127 1.91366 1.11296 1.84637 1.50884 1.42548 1.10116 1.02754 1.75828 1.18853 0.90502 0.84884 0.93375 1.20912 0.99523 0.91406 1.25121 1.21036 0.93219 0.97564 0.93873 1.21803 0.95493 0.97785 1.20354 1.18849 0.94325 0.86977 0.88378 1.19860 0.90808 0.94074 1.45279 0.89633 1.26968 1.04488 0.95167 0.94542 1.70424 1.37112 0.98109 1.25012 0.85394 0.77699 0.78643 0.79203 1.18685 1.17683 1.20555 1.68577 1.04085 1.28992 1.21365 0.91662 0.87827 0.90965 0.87083 0.93634 0.92567 0.86577 0.79799 0.77211 0.74446 0.84884 0.84331 0.87783 0.92197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.24 10.25 127.77 1.31 2.55 16 2 N -0.63 -18.79 2.87 -864.90 -2.49 -21.28 16 3 C 0.15 4.34 5.39 86.38 0.47 4.80 16 4 C -0.05 -1.38 6.12 29.85 0.18 -1.19 16 5 C 0.03 0.86 6.64 88.52 0.59 1.45 16 6 N -0.52 -16.46 10.54 -191.44 -2.02 -18.48 16 7 C 0.01 0.29 11.35 83.66 0.95 1.24 16 8 C -0.25 -4.19 11.37 66.78 0.76 -3.43 16 9 S 0.18 2.92 23.18 -56.49 -1.31 1.61 16 10 C 0.66 28.17 8.24 179.05 1.47 29.65 16 11 O -0.51 -28.55 11.84 -3.96 -0.05 -28.60 16 12 N -0.66 -26.54 5.26 -322.12 -1.69 -28.24 16 13 C 0.36 18.24 7.43 133.26 0.99 19.23 16 14 C -0.34 -14.96 9.95 22.72 0.23 -14.73 16 15 C -0.03 -1.45 10.15 22.40 0.23 -1.22 16 16 C -0.33 -17.24 9.83 22.87 0.22 -17.02 16 17 C 0.24 14.41 6.52 40.19 0.26 14.68 16 18 C -0.47 -27.93 9.13 23.47 0.21 -27.71 16 19 H 0.09 4.76 7.86 -2.91 -0.02 4.74 16 20 C 0.01 0.81 5.47 85.29 0.47 1.28 16 21 N -0.69 -42.21 9.24 21.84 0.20 -42.01 16 22 Si 0.97 43.46 29.57 68.60 2.03 45.49 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 24 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 26 N -0.51 -30.64 5.78 -186.36 -1.08 -31.72 16 27 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.10 1.04 8.07 -2.39 -0.02 1.02 16 29 H 0.07 1.11 6.29 -2.39 -0.02 1.09 16 30 H 0.11 2.16 8.07 -2.39 -0.02 2.14 16 31 H 0.04 1.73 7.42 -2.38 -0.02 1.71 16 32 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 35 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 36 H 0.42 12.22 6.39 -92.71 -0.59 11.63 16 37 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.14 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.10 5.05 8.06 -2.91 -0.02 5.03 16 40 H 0.27 15.82 8.29 -92.71 -0.77 15.05 16 Total: -1.00 -86.07 354.56 2.43 -83.64 By element: Atomic # 1 Polarization: 29.51 SS G_CDS: 0.49 Total: 30.00 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: 8.34 Total: 9.57 kcal Atomic # 7 Polarization: -134.64 SS G_CDS: -7.07 Total: -141.72 kcal Atomic # 8 Polarization: -28.55 SS G_CDS: -0.05 Total: -28.60 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.31 Total: 1.61 kcal Total: -86.07 2.43 -83.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881150541.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.179 kcal (2) G-P(sol) polarization free energy of solvation -86.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds