Wall clock time and date at job start Tue Mar 31 2020 16:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76200 * 99.99775 * 2 1 4 4 N 1.33208 * 118.70448 * 0.02562 * 3 2 1 5 5 C 1.31825 * 121.62229 * 179.97438 * 4 3 2 6 6 C 1.40199 * 118.39264 * 359.95772 * 5 4 3 7 7 C 1.42049 * 118.45005 * 0.04363 * 6 5 4 8 8 C 1.40470 * 118.19309 * 180.02562 * 7 6 5 9 9 C 1.36264 * 118.82875 * 0.02562 * 8 7 6 10 10 N 1.32533 * 122.08973 * 359.75870 * 9 8 7 11 11 C 1.32232 * 122.59078 * 0.51949 * 10 9 8 12 12 N 1.38199 * 120.22504 * 179.74477 * 11 10 9 13 13 C 1.47902 * 111.00049 * 322.95588 * 12 11 10 14 14 C 1.53995 * 107.06082 * 145.84361 * 13 12 11 15 15 C 1.54602 * 105.13853 * 358.77403 * 14 13 12 16 16 O 1.42894 * 110.72298 * 96.40081 * 15 14 13 17 17 C 1.50699 * 110.72200 * 219.68669 * 15 14 13 18 18 H 1.08002 * 119.99788 * 118.54601 * 17 15 14 19 19 C 1.37876 * 120.00002 * 298.54568 * 17 15 14 20 20 N 1.31510 * 120.00133 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99836 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47058 * 89.99929 * 21 19 17 23 23 H 1.48496 * 109.47016 * 209.99851 * 21 19 17 24 24 H 1.48502 * 109.47103 * 329.99930 * 21 19 17 25 25 C 1.48535 * 110.99940 * 80.35013 * 12 11 10 26 26 N 1.32177 * 118.70471 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47662 * 60.00390 * 1 2 3 28 28 H 1.09003 * 109.46991 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47310 * 299.99592 * 1 2 3 30 30 H 1.07999 * 120.79752 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.58487 * 180.02562 * 8 7 6 32 32 H 1.08000 * 118.95391 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.91526 * 26.48541 * 13 12 11 34 34 H 1.09001 * 110.07894 * 265.28903 * 13 12 11 35 35 H 1.08993 * 110.30918 * 117.69240 * 14 13 12 36 36 H 1.08997 * 110.30912 * 239.86320 * 14 13 12 37 37 H 0.96700 * 113.99897 * 61.45839 * 16 15 14 38 38 H 0.97005 * 120.00364 * 180.02562 * 20 19 17 39 39 H 1.09001 * 110.66554 * 318.71492 * 25 12 11 40 40 H 1.09000 * 110.66639 * 81.84514 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0763 2.5682 0.0005 5 6 1.2388 3.8764 0.0011 6 6 2.5449 4.3859 0.0020 7 6 3.6293 3.4683 0.0013 8 6 4.9356 3.9848 0.0028 9 6 5.1078 5.3365 0.0053 10 7 4.0829 6.1768 0.0017 11 6 2.8257 5.7669 0.0055 12 7 1.7942 6.6865 0.0067 13 6 2.1340 7.8631 0.8359 14 6 1.4860 9.0896 0.1670 15 6 0.7912 8.5387 -1.0995 16 8 -0.5934 8.2901 -0.8490 17 6 0.9633 9.4876 -2.2575 18 1 1.4846 9.1654 -3.1468 19 6 0.4553 10.7671 -2.1816 20 7 -0.1790 11.1597 -1.0985 21 14 0.6680 11.9432 -3.6174 22 1 -0.4848 11.8070 -4.5437 23 1 0.7332 13.3372 -3.1099 24 1 1.9245 11.6200 -4.3399 25 6 1.5480 7.2122 -1.3605 26 7 3.3678 2.1592 -0.0005 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 0.3863 4.5394 0.0011 31 1 5.7885 3.3221 0.0020 32 1 6.1113 5.7357 0.0060 33 1 3.2159 7.9898 0.8750 34 1 1.7384 7.7375 1.8438 35 1 0.7524 9.5412 0.8348 36 1 2.2488 9.8184 -0.1067 37 1 -1.0966 9.0787 -0.6040 38 1 -0.5368 12.0597 -1.0453 39 1 2.4901 7.4015 -1.8752 40 1 0.9281 6.5217 -1.9323 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894349416.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:28 Heat of formation + Delta-G solvation = 30.749220 kcal Electronic energy + Delta-G solvation = -25966.950982 eV Core-core repulsion = 22293.780551 eV Total energy + Delta-G solvation = -3673.170431 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.79517 -40.75354 -39.18001 -36.78953 -35.14665 -34.16258 -33.38088 -32.43180 -30.26071 -29.92885 -29.74867 -26.99882 -26.39102 -26.01250 -23.70906 -22.25523 -21.51288 -20.40650 -19.52435 -19.04617 -18.68467 -17.56808 -17.20764 -16.90180 -16.66913 -16.30134 -15.96123 -15.74513 -15.52177 -15.22132 -14.81633 -14.59614 -14.44170 -14.09930 -13.87610 -13.79853 -13.46839 -13.35136 -13.22276 -12.94368 -12.89423 -12.56874 -12.46371 -12.33291 -12.23996 -11.76918 -11.72179 -11.29725 -11.17977 -10.89804 -10.63043 -10.58864 -10.17141 -10.06865 -9.50422 -8.87020 -8.21590 -6.36753 -1.18991 -0.65865 0.06897 0.50393 1.12545 1.41432 1.44428 1.52593 1.72847 2.36230 2.49784 2.74221 2.83724 3.04102 3.19792 3.24981 3.39190 3.55899 3.73357 3.99509 4.14342 4.24090 4.33228 4.34233 4.36795 4.45008 4.47790 4.57118 4.64401 4.77638 4.92968 4.97051 5.00215 5.14695 5.27898 5.38948 5.51933 5.59075 5.63902 5.79524 6.04122 6.17765 6.55900 6.67407 6.72561 7.34675 7.46893 8.83761 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.018717 B = 0.003109 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.570588 B = 9005.381310 C = 9775.166251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S 0.015 5.985 3 C 0.296 3.704 4 N -0.544 5.544 5 C 0.261 3.739 6 C -0.232 4.232 7 C 0.195 3.805 8 C -0.172 4.172 9 C 0.143 3.857 10 N -0.545 5.545 11 C 0.377 3.623 12 N -0.471 5.471 13 C 0.045 3.955 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.563 4.563 18 H 0.053 0.947 19 C 0.036 3.964 20 N -0.906 5.906 21 Si 0.956 3.044 22 H -0.277 1.277 23 H -0.280 1.280 24 H -0.273 1.273 25 C 0.078 3.922 26 N -0.517 5.517 27 H 0.089 0.911 28 H 0.138 0.862 29 H 0.091 0.909 30 H 0.197 0.803 31 H 0.175 0.825 32 H 0.200 0.800 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.056 0.944 36 H 0.048 0.952 37 H 0.375 0.625 38 H 0.270 0.730 39 H 0.053 0.947 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.418 -17.067 4.110 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.249 5.751 3 C -0.080 4.080 4 N -0.261 5.261 5 C 0.078 3.922 6 C -0.243 4.243 7 C 0.059 3.941 8 C -0.194 4.194 9 C -0.005 4.005 10 N -0.259 5.259 11 C 0.133 3.867 12 N -0.193 5.193 13 C -0.082 4.082 14 C -0.155 4.155 15 C 0.208 3.792 16 O -0.393 6.393 17 C -0.601 4.601 18 H 0.071 0.929 19 C -0.166 4.166 20 N -0.545 5.545 21 Si 0.781 3.219 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.198 1.198 25 C -0.047 4.047 26 N -0.236 5.236 27 H 0.108 0.892 28 H 0.156 0.844 29 H 0.110 0.890 30 H 0.214 0.786 31 H 0.193 0.807 32 H 0.217 0.783 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.224 0.776 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.010 -19.045 4.250 20.418 hybrid contribution -0.369 3.152 -0.796 3.272 sum 5.641 -15.893 3.454 17.215 Atomic orbital electron populations 1.23712 0.91511 1.08275 1.07350 1.85719 1.09659 0.90779 1.88940 1.25771 0.87218 1.02395 0.92608 1.68867 1.33541 1.04680 1.18967 1.23904 0.96265 0.90864 0.81150 1.20006 0.97593 0.94974 1.11687 1.19282 0.94652 0.88484 0.91687 1.21797 0.95268 0.97101 1.05202 1.22846 0.98613 0.89069 0.89979 1.67837 1.00002 1.41575 1.16472 1.20225 0.88439 0.90074 0.87993 1.62451 1.32688 1.13281 1.10877 1.22928 1.00409 0.88262 0.96560 1.22711 0.99166 0.95437 0.98158 1.19454 0.79462 0.89021 0.91302 1.86103 1.22601 1.38596 1.91985 1.21771 1.37796 0.97990 1.02542 0.92922 1.25594 0.93845 0.99065 0.98076 1.69793 1.37061 1.19802 1.27847 0.85600 0.78478 0.78115 0.79664 1.20264 1.20562 1.19793 1.23097 0.98538 0.96444 0.86638 1.68979 1.20644 1.14442 1.19541 0.89182 0.84414 0.89035 0.78633 0.80744 0.78300 0.91153 0.90241 0.92514 0.93358 0.77583 0.92100 0.92909 0.90451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.59 113.37 1.09 -0.90 16 2 S 0.02 0.31 22.88 -56.49 -1.29 -0.98 16 3 C 0.30 8.33 7.84 180.34 1.41 9.75 16 4 N -0.54 -15.44 9.02 -195.27 -1.76 -17.20 16 5 C 0.26 7.79 10.91 85.17 0.93 8.72 16 6 C -0.23 -7.32 5.76 -21.20 -0.12 -7.44 16 7 C 0.19 5.79 6.64 40.38 0.27 6.06 16 8 C -0.17 -4.08 10.09 22.35 0.23 -3.85 16 9 C 0.14 3.38 11.06 84.13 0.93 4.31 16 10 N -0.55 -17.11 8.65 -193.53 -1.67 -18.78 16 11 C 0.38 12.66 5.57 133.83 0.75 13.41 16 12 N -0.47 -17.35 4.55 -688.44 -3.13 -20.49 16 13 C 0.04 1.69 6.59 86.45 0.57 2.26 16 14 C -0.12 -5.15 5.26 31.48 0.17 -4.99 16 15 C 0.25 11.78 0.95 -10.33 -0.01 11.77 16 16 O -0.58 -28.99 13.09 -148.98 -1.95 -30.94 16 17 C -0.56 -29.31 8.14 25.60 0.21 -29.10 16 18 H 0.05 2.76 7.78 -2.91 -0.02 2.74 16 19 C 0.04 1.82 5.28 84.65 0.45 2.27 16 20 N -0.91 -46.77 11.02 21.45 0.24 -46.53 16 21 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.08 3.25 5.63 86.65 0.49 3.74 16 26 N -0.52 -15.53 10.42 -189.91 -1.98 -17.51 16 27 H 0.09 1.40 8.10 -2.40 -0.02 1.38 16 28 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.09 1.39 8.10 -2.40 -0.02 1.37 16 30 H 0.20 5.61 7.70 -2.91 -0.02 5.59 16 31 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 32 H 0.20 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.07 2.58 6.58 -2.39 -0.02 2.56 16 34 H 0.08 2.77 8.14 -2.39 -0.02 2.76 16 35 H 0.06 2.64 7.98 -2.39 -0.02 2.62 16 36 H 0.05 2.28 7.84 -2.39 -0.02 2.27 16 37 H 0.38 19.02 7.48 -74.06 -0.55 18.47 16 38 H 0.27 13.30 8.31 -92.70 -0.77 12.53 16 39 H 0.05 2.26 7.90 -2.39 -0.02 2.24 16 40 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 Total: -1.00 -59.89 348.12 -1.65 -61.54 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: 0.53 Total: 31.66 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 7.35 Total: 16.02 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -8.31 Total: -120.51 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -1.95 Total: -30.94 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.29 Total: -0.98 kcal Total: -59.89 -1.65 -61.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894349416.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.289 kcal (2) G-P(sol) polarization free energy of solvation -59.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds