Wall clock time and date at job start Tue Mar 31 2020 16:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 103.00044 * 2 1 4 4 C 1.50697 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.30714 * 125.52630 * 270.00147 * 4 3 2 6 6 N 1.40444 * 106.79015 * 179.97438 * 5 4 3 7 7 H 0.97005 * 126.81999 * 179.97438 * 6 5 4 8 8 C 1.34423 * 106.35975 * 0.02562 * 6 5 4 9 9 C 1.50699 * 125.96802 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46934 * 94.99469 * 9 8 6 11 11 C 1.34787 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99618 * 0.02562 * 11 10 9 13 13 C 1.47638 * 120.00095 * 180.02562 * 11 10 9 14 14 C 1.40019 * 119.89441 * 359.72855 * 13 11 10 15 15 C 1.36313 * 120.10331 * 179.76113 * 14 13 11 16 16 C 1.40888 * 119.89591 * 0.50589 * 15 14 13 17 17 C 1.41111 * 120.10837 * 179.71884 * 16 15 14 18 18 H 1.08000 * 120.00271 * 204.65546 * 17 16 15 19 19 C 1.40225 * 119.99568 * 24.65812 * 17 16 15 20 20 N 1.30647 * 120.00070 * 17.86368 * 19 17 16 21 21 Si 1.86804 * 119.99904 * 197.86452 * 19 17 16 22 22 H 1.48496 * 109.47310 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47132 * 210.00111 * 21 19 17 24 24 H 1.48502 * 109.46796 * 330.00034 * 21 19 17 25 25 C 1.40890 * 119.79162 * 359.74676 * 16 15 14 26 26 C 1.36319 * 119.88859 * 359.97438 * 25 16 15 27 27 N 1.30831 * 108.07567 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47117 * 59.99874 * 1 2 3 29 29 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46825 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.47275 * 59.99895 * 3 2 1 32 32 H 1.09005 * 109.47217 * 300.00338 * 3 2 1 33 33 H 1.08990 * 109.47394 * 215.00027 * 9 8 6 34 34 H 1.09007 * 109.46931 * 335.00076 * 9 8 6 35 35 H 0.97001 * 120.00985 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.94539 * 0.02562 * 14 13 11 37 37 H 1.08008 * 120.05679 * 180.23495 * 15 14 13 38 38 H 0.97008 * 119.99791 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.05876 * 179.97438 * 25 16 15 40 40 H 1.08001 * 119.94479 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4746 2.0228 1.0629 6 7 5.7961 2.1721 0.6112 7 1 6.5912 2.2624 1.1595 8 6 5.7401 2.1663 -0.7319 9 6 6.9142 2.2986 -1.6673 10 7 7.3742 0.9659 -2.0651 11 6 8.4211 0.8369 -2.9041 12 8 8.9840 1.8267 -3.3304 13 6 8.8844 -0.5062 -3.3055 14 6 8.2381 -1.6447 -2.8087 15 6 8.6592 -2.8867 -3.1803 16 6 9.7533 -3.0241 -4.0573 17 6 10.1967 -4.3079 -4.4402 18 1 11.2181 -4.4534 -4.7598 19 6 9.3112 -5.3946 -4.4058 20 7 8.0222 -5.1858 -4.3649 21 14 9.9747 -7.1408 -4.4184 22 1 10.1961 -7.5963 -3.0225 23 1 8.9950 -8.0378 -5.0823 24 1 11.2605 -7.1764 -5.1605 25 6 10.4038 -1.8757 -4.5503 26 6 9.9718 -0.6377 -4.1775 27 7 4.4884 2.0245 -1.0854 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 6.6121 2.8580 -2.5526 34 1 7.7232 2.8265 -1.1624 35 1 6.9254 0.1761 -1.7248 36 1 7.4020 -1.5384 -2.1335 37 1 8.1578 -3.7644 -2.7997 38 1 7.4096 -5.9377 -4.3415 39 1 11.2431 -1.9760 -5.2225 40 1 10.4700 0.2433 -4.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894606295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:05 Heat of formation + Delta-G solvation = 63.465936 kcal Electronic energy + Delta-G solvation = -24184.506402 eV Core-core repulsion = 20512.754675 eV Total energy + Delta-G solvation = -3671.751727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.50252 -39.16517 -37.18707 -34.92276 -33.90231 -33.49376 -32.00918 -30.38579 -29.56649 -29.46216 -28.72105 -27.22125 -25.48933 -22.21074 -21.67713 -21.01153 -20.81812 -19.77730 -18.36000 -17.54893 -16.96208 -16.71826 -16.12636 -15.52818 -15.30250 -14.89406 -14.70989 -14.35748 -14.11749 -14.05669 -13.93843 -13.56678 -13.24045 -13.04707 -12.88193 -12.77238 -12.57741 -12.17990 -12.09179 -11.94118 -11.39135 -11.30541 -10.97942 -10.68025 -10.61083 -10.35281 -10.26200 -10.07702 -9.85348 -9.58371 -9.38030 -9.07537 -8.84666 -7.92897 -7.74942 -7.57926 -7.05591 -4.62961 0.86364 1.42668 2.17115 2.17860 2.28460 2.73289 2.90353 2.94930 2.97464 3.01892 3.46194 3.72305 3.77392 3.81960 4.14095 4.37880 4.52387 4.81797 4.84362 4.86643 4.99000 5.31437 5.39046 5.46014 5.55263 5.86078 5.96361 5.99545 6.03091 6.28765 6.63670 6.70459 6.75392 6.80444 7.00326 7.10266 7.40528 7.59405 7.74407 7.74732 7.83665 8.03698 8.08036 8.37544 8.60511 8.72526 8.92048 9.86150 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.002697 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.456916 B =10380.261184 C =12579.343880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 S -0.222 6.222 3 C 0.003 3.997 4 C 0.237 3.763 5 N -0.292 5.292 6 N -0.467 5.467 7 H 0.445 0.555 8 C 0.280 3.720 9 C 0.204 3.796 10 N -0.739 5.739 11 C 0.578 3.422 12 O -0.572 6.572 13 C -0.286 4.286 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.440 4.440 18 H 0.086 0.914 19 C 0.074 3.926 20 N -0.768 5.768 21 Si 0.914 3.086 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.259 1.259 25 C -0.239 4.239 26 C -0.019 4.019 27 N -0.509 5.509 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.288 0.712 39 H 0.099 0.901 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.497 8.628 9.798 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.001 5.999 3 C -0.147 4.147 4 C -0.046 4.046 5 N -0.123 5.123 6 N -0.186 5.186 7 H 0.292 0.708 8 C 0.000 4.000 9 C 0.077 3.923 10 N -0.394 5.394 11 C 0.374 3.626 12 O -0.453 6.453 13 C -0.291 4.291 14 C -0.080 4.080 15 C -0.197 4.197 16 C 0.126 3.874 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.148 4.148 20 N -0.391 5.391 21 Si 0.738 3.262 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.183 1.183 25 C -0.259 4.259 26 C -0.039 4.039 27 N -0.238 5.238 28 H 0.099 0.901 29 H 0.123 0.877 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.106 0.894 35 H 0.238 0.762 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.099 0.901 39 H 0.117 0.883 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.127 8.322 9.854 17.035 hybrid contribution -0.377 -0.102 0.477 0.616 sum -11.504 8.220 10.331 17.511 Atomic orbital electron populations 1.23454 0.94125 1.06916 1.05064 1.87447 1.06907 1.07496 1.98023 1.21429 0.88813 0.97436 1.07044 1.23088 0.96091 0.99277 0.86151 1.78009 0.87373 1.25020 1.21865 1.48053 1.08530 1.55623 1.06436 0.70841 1.24413 0.95046 0.96563 0.83951 1.19543 0.88967 0.87976 0.95794 1.45861 1.35374 1.06755 1.51455 1.18588 0.77680 0.90115 0.76252 1.90651 1.57731 1.40291 1.56655 1.18779 1.06393 0.89972 1.13922 1.20463 0.96852 0.93032 0.97646 1.20978 1.01351 0.95835 1.01526 1.17801 0.89875 0.92484 0.87269 1.19881 0.98243 0.92021 1.36618 0.89620 1.26120 0.94365 1.02388 0.91952 1.69745 1.03178 1.34857 1.31295 0.86196 0.80077 0.80232 0.79715 1.18919 1.19966 1.18253 1.20713 1.05641 0.92164 1.07350 1.20350 0.93421 0.96581 0.93524 1.70395 1.00036 1.22959 1.30459 0.90142 0.87663 0.90351 0.87656 0.87061 0.87867 0.89358 0.76214 0.89478 0.86193 0.90117 0.88311 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.83 10.76 101.05 1.09 0.26 16 2 S -0.22 -2.43 22.36 -107.50 -2.40 -4.84 16 3 C 0.00 0.03 6.57 36.00 0.24 0.26 16 4 C 0.24 3.04 7.40 -156.85 -1.16 1.88 16 5 N -0.29 -3.71 12.80 32.42 0.41 -3.29 16 6 N -0.47 -5.06 7.45 32.62 0.24 -4.82 16 7 H 0.44 3.37 8.96 -182.33 -1.63 1.73 16 8 C 0.28 3.47 7.60 -155.70 -1.18 2.29 16 9 C 0.20 2.60 6.30 -5.20 -0.03 2.57 16 10 N -0.74 -11.78 5.50 -62.50 -0.34 -12.13 16 11 C 0.58 11.66 7.76 -12.42 -0.10 11.56 16 12 O -0.57 -12.71 16.32 5.29 0.09 -12.62 16 13 C -0.29 -6.37 5.89 -104.73 -0.62 -6.99 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 15 C -0.18 -4.33 8.64 -39.27 -0.34 -4.67 16 16 C 0.13 3.25 5.58 -106.80 -0.60 2.65 16 17 C -0.44 -10.83 9.04 -37.75 -0.34 -11.17 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 20 N -0.77 -18.37 10.95 55.56 0.61 -17.76 16 21 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.26 -4.82 7.11 56.52 0.40 -4.41 16 25 C -0.24 -5.69 9.73 -39.27 -0.38 -6.07 16 26 C -0.02 -0.45 9.52 -39.61 -0.38 -0.83 16 27 N -0.51 -7.17 11.19 -8.16 -0.09 -7.27 16 28 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 29 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.11 0.81 8.14 -51.92 -0.42 0.38 16 32 H 0.11 0.94 8.14 -51.92 -0.42 0.52 16 33 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 34 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 6.26 6.46 -40.82 -0.26 6.00 16 36 H 0.09 1.68 6.37 -52.49 -0.33 1.35 16 37 H 0.12 2.98 6.16 -52.48 -0.32 2.66 16 38 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -30.48 363.72 -11.19 -41.67 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.89 Total: 11.79 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: -4.27 Total: -8.35 kcal Atomic # 7 Polarization: -46.10 SS G_CDS: 0.83 Total: -45.27 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.62 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -2.40 Total: -4.84 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.48 -11.19 -41.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894606295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.136 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds