Wall clock time and date at job start Tue Mar 31 2020 16:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 C 1.81394 * 103.00044 * 2 1 4 4 C 1.50697 * 109.47214 * 180.02562 * 3 2 1 5 5 N 1.30714 * 125.52630 * 270.00147 * 4 3 2 6 6 N 1.40444 * 106.79015 * 179.97438 * 5 4 3 7 7 H 0.97005 * 126.81999 * 179.97438 * 6 5 4 8 8 C 1.34423 * 106.35975 * 0.02562 * 6 5 4 9 9 C 1.50699 * 125.96802 * 180.02562 * 8 6 5 10 10 N 1.46497 * 109.46934 * 94.99469 * 9 8 6 11 11 C 1.34787 * 119.99951 * 180.02562 * 10 9 8 12 12 O 1.21587 * 119.99618 * 0.02562 * 11 10 9 13 13 C 1.47638 * 120.00095 * 180.02562 * 11 10 9 14 14 C 1.40019 * 119.89441 * 359.72855 * 13 11 10 15 15 C 1.36313 * 120.10331 * 179.76113 * 14 13 11 16 16 C 1.40888 * 119.89591 * 0.50589 * 15 14 13 17 17 C 1.41111 * 120.10837 * 179.71884 * 16 15 14 18 18 H 1.08000 * 120.00271 * 204.65546 * 17 16 15 19 19 C 1.40225 * 119.99568 * 24.65812 * 17 16 15 20 20 N 1.30647 * 120.00070 * 17.86368 * 19 17 16 21 21 Si 1.86804 * 119.99904 * 197.86452 * 19 17 16 22 22 H 1.48496 * 109.47310 * 89.99891 * 21 19 17 23 23 H 1.48500 * 109.47132 * 210.00111 * 21 19 17 24 24 H 1.48502 * 109.46796 * 330.00034 * 21 19 17 25 25 C 1.40890 * 119.79162 * 359.74676 * 16 15 14 26 26 C 1.36319 * 119.88859 * 359.97438 * 25 16 15 27 27 N 1.30831 * 108.07567 * 359.97438 * 8 6 5 28 28 H 1.09000 * 109.47117 * 59.99874 * 1 2 3 29 29 H 1.09004 * 109.46751 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46825 * 299.99998 * 1 2 3 31 31 H 1.09000 * 109.47275 * 59.99895 * 3 2 1 32 32 H 1.09005 * 109.47217 * 300.00338 * 3 2 1 33 33 H 1.08990 * 109.47394 * 215.00027 * 9 8 6 34 34 H 1.09007 * 109.46931 * 335.00076 * 9 8 6 35 35 H 0.97001 * 120.00985 * 0.02562 * 10 9 8 36 36 H 1.07997 * 119.94539 * 0.02562 * 14 13 11 37 37 H 1.08008 * 120.05679 * 180.23495 * 15 14 13 38 38 H 0.97008 * 119.99791 * 179.97438 * 20 19 17 39 39 H 1.08001 * 120.05876 * 179.97438 * 25 16 15 40 40 H 1.08001 * 119.94479 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7195 1.9373 -0.0006 5 7 4.4746 2.0228 1.0629 6 7 5.7961 2.1721 0.6112 7 1 6.5912 2.2624 1.1595 8 6 5.7401 2.1663 -0.7319 9 6 6.9142 2.2986 -1.6673 10 7 7.3742 0.9659 -2.0651 11 6 8.4211 0.8369 -2.9041 12 8 8.9840 1.8267 -3.3304 13 6 8.8844 -0.5062 -3.3055 14 6 8.2381 -1.6447 -2.8087 15 6 8.6592 -2.8867 -3.1803 16 6 9.7533 -3.0241 -4.0573 17 6 10.1967 -4.3079 -4.4402 18 1 11.2181 -4.4534 -4.7598 19 6 9.3112 -5.3946 -4.4058 20 7 8.0222 -5.1858 -4.3649 21 14 9.9747 -7.1408 -4.4184 22 1 10.1961 -7.5963 -3.0225 23 1 8.9950 -8.0378 -5.0823 24 1 11.2605 -7.1764 -5.1605 25 6 10.4038 -1.8757 -4.5503 26 6 9.9718 -0.6377 -4.1775 27 7 4.4884 2.0245 -1.0854 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8032 2.2371 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 6.6121 2.8580 -2.5526 34 1 7.7232 2.8265 -1.1624 35 1 6.9254 0.1761 -1.7248 36 1 7.4020 -1.5384 -2.1335 37 1 8.1578 -3.7644 -2.7997 38 1 7.4096 -5.9377 -4.3415 39 1 11.2431 -1.9760 -5.2225 40 1 10.4700 0.2433 -4.5546 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894606295.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:04 Heat of formation + Delta-G solvation = 45.118427 kcal Electronic energy + Delta-G solvation = -24185.302010 eV Core-core repulsion = 20512.754675 eV Total energy + Delta-G solvation = -3672.547335 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.45671 -40.77971 -38.93499 -36.22793 -35.67278 -34.47466 -33.12699 -32.02324 -31.29636 -30.33314 -29.46612 -28.50338 -27.07631 -23.76611 -22.93792 -22.60238 -21.84793 -21.35866 -19.45364 -19.33170 -18.39833 -17.65214 -17.35485 -17.03457 -16.48825 -16.18892 -15.92549 -15.73087 -15.26211 -15.12727 -15.01760 -14.69340 -14.59027 -14.39309 -14.12015 -13.88695 -13.66451 -13.62266 -13.28430 -13.21732 -13.13922 -12.86785 -12.61427 -12.37514 -11.76869 -11.44298 -11.37415 -11.33609 -11.21870 -11.12434 -10.85360 -10.58819 -10.23324 -9.57488 -9.41515 -8.79453 -8.73975 -6.48445 0.00947 0.42833 0.55490 1.15942 1.35918 1.38788 1.43229 1.53600 1.56360 1.80184 2.10264 2.17033 2.40618 2.64624 2.77864 3.26716 3.47664 3.69337 4.05763 4.17799 4.28087 4.29165 4.38623 4.38906 4.43906 4.46432 4.53366 4.91482 4.93307 4.94155 5.02899 5.07263 5.15174 5.29524 5.32246 5.58654 5.81035 5.89345 5.93519 5.99858 6.22908 6.52107 6.55156 6.77265 6.80247 6.88732 7.33208 8.15424 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.010670 B = 0.002697 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.456916 B =10380.261184 C =12579.343880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.299 6.299 3 C 0.015 3.985 4 C 0.228 3.772 5 N -0.303 5.303 6 N -0.453 5.453 7 H 0.459 0.541 8 C 0.280 3.720 9 C 0.207 3.793 10 N -0.724 5.724 11 C 0.583 3.417 12 O -0.592 6.592 13 C -0.292 4.292 14 C -0.054 4.054 15 C -0.199 4.199 16 C 0.102 3.898 17 C -0.472 4.472 18 H 0.087 0.913 19 C 0.037 3.963 20 N -0.798 5.798 21 Si 0.988 3.012 22 H -0.260 1.260 23 H -0.266 1.266 24 H -0.256 1.256 25 C -0.252 4.252 26 C -0.029 4.029 27 N -0.536 5.536 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.405 0.595 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.296 0.704 39 H 0.106 0.894 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 8.919 10.786 18.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.076 6.076 3 C -0.135 4.135 4 C -0.055 4.055 5 N -0.135 5.135 6 N -0.174 5.174 7 H 0.308 0.692 8 C 0.000 4.000 9 C 0.081 3.919 10 N -0.378 5.378 11 C 0.377 3.623 12 O -0.475 6.475 13 C -0.297 4.297 14 C -0.073 4.073 15 C -0.219 4.219 16 C 0.099 3.901 17 C -0.499 4.499 18 H 0.105 0.895 19 C -0.182 4.182 20 N -0.421 5.421 21 Si 0.807 3.193 22 H -0.184 1.184 23 H -0.190 1.190 24 H -0.179 1.179 25 C -0.271 4.271 26 C -0.048 4.048 27 N -0.265 5.265 28 H 0.111 0.889 29 H 0.130 0.870 30 H 0.115 0.885 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.120 0.880 34 H 0.132 0.868 35 H 0.242 0.758 36 H 0.132 0.868 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.124 0.876 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.219 8.637 10.876 18.499 hybrid contribution -0.136 -0.066 0.214 0.262 sum -12.355 8.572 11.090 18.685 Atomic orbital electron populations 1.23497 0.89634 1.07800 1.06590 1.87652 1.11989 1.09680 1.98247 1.21506 0.87247 0.96107 1.08627 1.23596 0.97316 0.98854 0.85690 1.77974 0.87957 1.25304 1.22224 1.47987 1.08697 1.54595 1.06105 0.69157 1.24177 0.94557 0.96885 0.84367 1.19665 0.89887 0.86087 0.96219 1.45652 1.33831 1.08456 1.49877 1.18211 0.78469 0.88839 0.76762 1.90643 1.58723 1.40521 1.57658 1.19086 1.05953 0.91353 1.13270 1.20663 0.97093 0.92182 0.97327 1.20990 1.01997 0.96409 1.02474 1.18141 0.90665 0.93331 0.87997 1.20139 0.98787 0.92843 1.38117 0.89490 1.26948 0.94307 1.06102 0.90879 1.69776 1.04324 1.36513 1.31520 0.85106 0.79456 0.74866 0.79831 1.18412 1.19021 1.17935 1.20870 1.06128 0.92323 1.07825 1.20529 0.93895 0.96537 0.93821 1.70372 1.00875 1.23730 1.31561 0.88904 0.87045 0.88512 0.85552 0.85915 0.87985 0.86825 0.75847 0.86839 0.87213 0.89234 0.87577 0.87264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.76 113.37 1.22 0.05 16 2 S -0.30 -6.29 22.36 -56.49 -1.26 -7.55 16 3 C 0.01 0.27 6.57 71.24 0.47 0.73 16 4 C 0.23 5.54 7.40 138.63 1.03 6.57 16 5 N -0.30 -7.24 12.80 -51.33 -0.66 -7.89 16 6 N -0.45 -8.96 7.45 -50.71 -0.38 -9.34 16 7 H 0.46 5.96 8.96 -213.09 -1.91 4.05 16 8 C 0.28 6.46 7.60 138.23 1.05 7.51 16 9 C 0.21 4.87 6.30 85.63 0.54 5.41 16 10 N -0.72 -21.90 5.50 -469.89 -2.58 -24.48 16 11 C 0.58 22.84 7.76 86.72 0.67 23.51 16 12 O -0.59 -25.61 16.32 -3.99 -0.07 -25.67 16 13 C -0.29 -12.91 5.89 -19.93 -0.12 -13.03 16 14 C -0.05 -2.36 9.47 22.25 0.21 -2.15 16 15 C -0.20 -9.92 8.64 22.47 0.19 -9.72 16 16 C 0.10 5.26 5.58 -21.28 -0.12 5.14 16 17 C -0.47 -23.73 9.04 23.46 0.21 -23.52 16 18 H 0.09 4.18 7.91 -2.91 -0.02 4.15 16 19 C 0.04 1.71 5.14 85.35 0.44 2.15 16 20 N -0.80 -38.63 10.95 21.87 0.24 -38.39 16 21 Si 0.99 34.94 29.60 68.60 2.03 36.97 16 22 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 23 H -0.27 -8.94 7.11 99.48 0.71 -8.24 16 24 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 25 C -0.25 -12.25 9.73 22.47 0.22 -12.04 16 26 C -0.03 -1.33 9.52 22.25 0.21 -1.12 16 27 N -0.54 -14.39 11.19 -179.73 -2.01 -16.40 16 28 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.41 11.94 6.46 -92.71 -0.60 11.34 16 36 H 0.11 4.27 6.37 -2.91 -0.02 4.25 16 37 H 0.11 5.61 6.16 -2.91 -0.02 5.59 16 38 H 0.30 12.82 8.29 -92.70 -0.77 12.05 16 39 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 40 H 0.11 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -66.23 363.72 0.14 -66.09 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -1.40 Total: 37.16 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 6.23 Total: -10.49 kcal Atomic # 7 Polarization: -91.11 SS G_CDS: -5.39 Total: -96.50 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.07 Total: -25.67 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Atomic # 16 Polarization: -6.29 SS G_CDS: -1.26 Total: -7.55 kcal Total: -66.23 0.14 -66.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894606295.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.205 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds