Wall clock time and date at job start Tue Mar 31 2020 16:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46980 * 2 1 4 4 C 1.34676 * 116.99561 * 180.02562 * 3 2 1 5 5 O 1.21428 * 120.00350 * 359.97438 * 4 3 2 6 6 C 1.48075 * 119.99871 * 179.97438 * 4 3 2 7 7 C 1.39342 * 119.72992 * 179.97438 * 6 4 3 8 8 C 1.38584 * 119.05780 * 180.02562 * 7 6 4 9 9 C 1.38623 * 118.49029 * 359.75429 * 8 7 6 10 10 C 1.38576 * 119.35677 * 0.49218 * 9 8 7 11 11 C 1.50706 * 119.54849 * 179.77297 * 10 9 8 12 12 N 1.46900 * 109.46923 * 94.72169 * 11 10 9 13 13 C 1.46904 * 110.99558 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.47172 * 35.00472 * 13 12 11 15 15 C 1.50699 * 109.46856 * 155.00187 * 13 12 11 16 16 H 1.07998 * 120.00193 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99905 * 179.97438 * 15 13 12 18 18 N 1.31508 * 120.00125 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99842 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47072 * 120.00290 * 19 17 15 22 22 H 1.48500 * 109.46872 * 239.99783 * 19 17 15 23 23 C 1.52999 * 109.47184 * 275.00334 * 13 12 11 24 24 F 1.39894 * 109.47454 * 60.00145 * 23 13 12 25 25 F 1.39899 * 109.47140 * 180.02562 * 23 13 12 26 26 F 1.39898 * 109.46940 * 299.99889 * 23 13 12 27 27 N 1.31507 * 120.90696 * 359.49254 * 10 9 8 28 28 H 1.08997 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46852 * 300.00639 * 1 2 3 30 30 H 1.08999 * 109.47093 * 60.00353 * 1 2 3 31 31 H 1.08992 * 109.47203 * 239.99764 * 2 1 3 32 32 H 1.09007 * 109.46947 * 119.99367 * 2 1 3 33 33 H 1.08004 * 120.46748 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.75255 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.32166 * 180.23942 * 9 8 7 36 36 H 1.09000 * 109.47292 * 214.73031 * 11 10 9 37 37 H 1.09001 * 109.46828 * 334.72627 * 11 10 9 38 38 H 1.00903 * 110.99883 * 56.05711 * 12 11 10 39 39 H 0.97000 * 119.99983 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3492 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9152 2.9137 -0.0011 7 6 5.2974 3.0897 -0.0012 8 6 5.8121 4.3764 -0.0012 9 6 4.9265 5.4429 -0.0064 10 6 3.5633 5.1939 -0.0011 11 6 2.5966 6.3501 -0.0015 12 7 2.1904 6.6481 -1.3815 13 6 1.2464 7.7729 -1.4210 14 1 1.5052 8.4921 -0.6438 15 6 1.3189 8.4425 -2.7691 16 1 1.9980 8.0695 -3.5215 17 6 0.5174 9.5306 -3.0424 18 7 -0.3099 9.9845 -2.1265 19 14 0.6069 10.3600 -4.7139 20 1 1.6085 9.6625 -5.5597 21 1 -0.7241 10.2969 -5.3696 22 1 1.0067 11.7797 -4.5411 23 6 -0.1738 7.2553 -1.1843 24 9 -0.2412 6.6338 0.0672 25 9 -1.0730 8.3264 -1.2225 26 9 -0.5060 6.3324 -2.1818 27 7 3.1015 3.9626 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.9583 2.2355 -0.0003 34 1 6.8790 4.5445 -0.0008 35 1 5.2953 6.4579 -0.0105 36 1 1.7176 6.0890 0.5877 37 1 3.0780 7.2263 0.4328 38 1 1.7996 5.8319 -1.8277 39 1 -0.8734 10.7502 -2.3187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896696037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:45 Heat of formation + Delta-G solvation = -182.323265 kcal Electronic energy + Delta-G solvation = -28883.576936 eV Core-core repulsion = 24184.264627 eV Total energy + Delta-G solvation = -4699.312309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.49036 -46.16166 -45.65529 -40.90638 -39.74574 -36.76489 -35.88083 -33.13593 -32.81121 -31.84873 -31.39350 -28.28844 -25.61822 -25.00959 -24.31811 -23.15739 -21.94271 -21.07023 -20.96517 -18.38748 -17.40081 -17.00912 -16.81923 -16.74802 -16.68711 -16.20430 -16.03898 -15.87572 -14.88232 -14.63084 -14.38025 -14.10728 -13.64106 -13.49981 -13.22825 -13.14581 -12.93749 -12.79482 -12.57347 -12.49445 -12.37830 -12.10909 -12.05864 -11.96225 -11.87860 -11.73857 -11.57045 -11.05760 -10.88621 -10.71231 -10.65462 -10.55640 -10.16611 -10.02280 -9.68302 -9.47582 -9.17589 -8.58381 -7.72871 -6.14076 -4.31144 0.44871 1.11541 2.32213 2.43327 3.23544 3.31816 3.36930 3.69066 3.96442 4.27491 4.42573 4.56509 4.65004 4.77639 4.82217 4.87993 4.91056 4.98818 5.08686 5.08943 5.27363 5.48264 5.52179 5.64453 5.65456 5.74225 5.79129 5.84748 5.95179 6.02885 6.16341 6.19846 6.25317 6.47994 6.70810 7.46530 7.48644 7.76457 7.86730 7.99930 8.03975 8.75419 9.34116 10.78425 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.003503 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.236091 B = 7992.266995 C = 9075.475829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.060 3.940 3 O -0.329 6.329 4 C 0.529 3.471 5 O -0.507 6.507 6 C 0.086 3.914 7 C -0.113 4.113 8 C -0.086 4.086 9 C -0.115 4.115 10 C 0.143 3.857 11 C 0.090 3.910 12 N -0.663 5.663 13 C 0.192 3.808 14 H 0.074 0.926 15 C -0.515 4.515 16 H 0.079 0.921 17 C 0.057 3.943 18 N -0.851 5.851 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.394 3.606 24 F -0.230 7.230 25 F -0.137 7.137 26 F -0.207 7.207 27 N -0.429 5.429 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.342 0.658 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.435 -12.462 5.990 15.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.014 4.014 3 O -0.244 6.244 4 C 0.372 3.628 5 O -0.395 6.395 6 C -0.051 4.051 7 C -0.133 4.133 8 C -0.112 4.112 9 C -0.135 4.135 10 C 0.002 3.998 11 C -0.039 4.039 12 N -0.294 5.294 13 C 0.081 3.919 14 H 0.092 0.908 15 C -0.552 4.552 16 H 0.097 0.903 17 C -0.150 4.150 18 N -0.486 5.486 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.209 1.209 22 H -0.208 1.208 23 C 0.338 3.662 24 F -0.212 7.212 25 F -0.118 7.118 26 F -0.189 7.189 27 N -0.141 5.141 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.166 0.834 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.160 0.840 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.080 -12.424 5.908 15.473 hybrid contribution -0.277 -0.154 -0.443 0.545 sum 6.804 -12.578 5.465 15.309 Atomic orbital electron populations 1.21807 0.92309 1.02799 1.04130 1.23106 0.95775 0.80032 1.02450 1.86733 1.22863 1.31930 1.82923 1.20836 0.81074 0.88518 0.72346 1.90820 1.60797 1.41499 1.46397 1.19935 0.90323 0.90492 1.04355 1.22009 0.94432 0.98999 0.97880 1.21600 1.00910 0.91573 0.97094 1.22381 0.93712 1.01067 0.96374 1.21435 0.93005 0.91557 0.93843 1.21163 0.96625 0.93091 0.93056 1.60766 1.44860 1.10360 1.13386 1.20477 0.80210 0.89343 1.01898 0.90837 1.20839 1.23998 1.12832 0.97553 0.90267 1.25145 0.94489 0.97118 0.98237 1.70383 1.21980 1.22962 1.33312 0.86216 0.78085 0.78975 0.82897 1.19391 1.20862 1.20781 1.24201 0.95524 0.75442 0.71080 1.92988 1.97314 1.84899 1.46005 1.93420 1.70849 1.52097 1.95418 1.92994 1.94220 1.68805 1.62869 1.67483 1.39455 0.98749 1.08440 0.90267 0.91267 0.91092 0.91136 0.91228 0.83552 0.83669 0.83427 0.91935 0.89106 0.83968 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.29 37.16 0.38 -0.99 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.33 -4.82 10.04 -40.43 -0.41 -5.23 16 4 C 0.53 7.88 7.95 34.77 0.28 8.15 16 5 O -0.51 -7.76 16.11 -19.21 -0.31 -8.07 16 6 C 0.09 1.26 6.75 -83.03 -0.56 0.70 16 7 C -0.11 -1.32 9.63 -39.04 -0.38 -1.70 16 8 C -0.09 -0.87 10.17 -39.31 -0.40 -1.27 16 9 C -0.11 -1.38 9.73 -39.31 -0.38 -1.76 16 10 C 0.14 2.17 6.29 -82.60 -0.52 1.65 16 11 C 0.09 1.53 5.69 -4.97 -0.03 1.50 16 12 N -0.66 -13.40 6.22 -109.21 -0.68 -14.08 16 13 C 0.19 4.52 2.26 -68.86 -0.16 4.37 16 14 H 0.07 1.79 7.80 -51.93 -0.40 1.39 16 15 C -0.51 -13.31 8.58 -34.44 -0.30 -13.61 16 16 H 0.08 2.06 7.81 -52.49 -0.41 1.65 16 17 C 0.06 1.48 5.20 -17.82 -0.09 1.39 16 18 N -0.85 -23.09 9.50 55.43 0.53 -22.57 16 19 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 23 C 0.39 9.65 2.74 37.16 0.10 9.75 16 24 F -0.23 -5.23 15.04 2.25 0.03 -5.20 16 25 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 26 F -0.21 -5.11 16.31 2.25 0.04 -5.08 16 27 N -0.43 -7.03 10.03 -6.07 -0.06 -7.09 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.15 1.46 7.64 -52.48 -0.40 1.06 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 35 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.06 1.15 6.03 -51.93 -0.31 0.83 16 37 H 0.09 1.38 7.96 -51.93 -0.41 0.97 16 38 H 0.34 7.18 7.88 -39.29 -0.31 6.87 16 39 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -29.90 348.73 -6.76 -36.66 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.35 Total: 4.49 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -1.82 Total: 9.06 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.21 Total: -43.73 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -0.72 Total: -13.30 kcal Atomic # 9 Polarization: -14.03 SS G_CDS: 0.10 Total: -13.93 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.90 -6.76 -36.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.665 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds