Wall clock time and date at job start Tue Mar 31 2020 16:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46980 * 2 1 4 4 C 1.34676 * 116.99561 * 180.02562 * 3 2 1 5 5 O 1.21428 * 120.00350 * 359.97438 * 4 3 2 6 6 C 1.48075 * 119.99871 * 179.97438 * 4 3 2 7 7 C 1.39342 * 119.72992 * 179.97438 * 6 4 3 8 8 C 1.38584 * 119.05780 * 180.02562 * 7 6 4 9 9 C 1.38623 * 118.49029 * 359.75429 * 8 7 6 10 10 C 1.38576 * 119.35677 * 0.49218 * 9 8 7 11 11 C 1.50706 * 119.54849 * 179.77297 * 10 9 8 12 12 N 1.46900 * 109.46923 * 94.72169 * 11 10 9 13 13 C 1.46904 * 110.99558 * 180.02562 * 12 11 10 14 14 H 1.09006 * 109.47172 * 35.00472 * 13 12 11 15 15 C 1.50699 * 109.46856 * 155.00187 * 13 12 11 16 16 H 1.07998 * 120.00193 * 0.02562 * 15 13 12 17 17 C 1.37876 * 119.99905 * 179.97438 * 15 13 12 18 18 N 1.31508 * 120.00125 * 0.02562 * 17 15 13 19 19 Si 1.86807 * 119.99842 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47093 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47072 * 120.00290 * 19 17 15 22 22 H 1.48500 * 109.46872 * 239.99783 * 19 17 15 23 23 C 1.52999 * 109.47184 * 275.00334 * 13 12 11 24 24 F 1.39894 * 109.47454 * 60.00145 * 23 13 12 25 25 F 1.39899 * 109.47140 * 180.02562 * 23 13 12 26 26 F 1.39898 * 109.46940 * 299.99889 * 23 13 12 27 27 N 1.31507 * 120.90696 * 359.49254 * 10 9 8 28 28 H 1.08997 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46852 * 300.00639 * 1 2 3 30 30 H 1.08999 * 109.47093 * 60.00353 * 1 2 3 31 31 H 1.08992 * 109.47203 * 239.99764 * 2 1 3 32 32 H 1.09007 * 109.46947 * 119.99367 * 2 1 3 33 33 H 1.08004 * 120.46748 * 359.97438 * 7 6 4 34 34 H 1.08002 * 120.75255 * 179.97438 * 8 7 6 35 35 H 1.08000 * 120.32166 * 180.23942 * 9 8 7 36 36 H 1.09000 * 109.47292 * 214.73031 * 11 10 9 37 37 H 1.09001 * 109.46828 * 334.72627 * 11 10 9 38 38 H 1.00903 * 110.99883 * 56.05711 * 12 11 10 39 39 H 0.97000 * 119.99983 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3492 1.5454 -0.0005 5 8 4.0889 0.5824 -0.0005 6 6 3.9152 2.9137 -0.0011 7 6 5.2974 3.0897 -0.0012 8 6 5.8121 4.3764 -0.0012 9 6 4.9265 5.4429 -0.0064 10 6 3.5633 5.1939 -0.0011 11 6 2.5966 6.3501 -0.0015 12 7 2.1904 6.6481 -1.3815 13 6 1.2464 7.7729 -1.4210 14 1 1.5052 8.4921 -0.6438 15 6 1.3189 8.4425 -2.7691 16 1 1.9980 8.0695 -3.5215 17 6 0.5174 9.5306 -3.0424 18 7 -0.3099 9.9845 -2.1265 19 14 0.6069 10.3600 -4.7139 20 1 1.6085 9.6625 -5.5597 21 1 -0.7241 10.2969 -5.3696 22 1 1.0067 11.7797 -4.5411 23 6 -0.1738 7.2553 -1.1843 24 9 -0.2412 6.6338 0.0672 25 9 -1.0730 8.3264 -1.2225 26 9 -0.5060 6.3324 -2.1818 27 7 3.1015 3.9626 -0.0011 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 5.9583 2.2355 -0.0003 34 1 6.8790 4.5445 -0.0008 35 1 5.2953 6.4579 -0.0105 36 1 1.7176 6.0890 0.5877 37 1 3.0780 7.2263 0.4328 38 1 1.7996 5.8319 -1.8277 39 1 -0.8734 10.7502 -2.3187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896696037.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:16:44 Heat of formation + Delta-G solvation = -200.714039 kcal Electronic energy + Delta-G solvation = -28884.374420 eV Core-core repulsion = 24184.264627 eV Total energy + Delta-G solvation = -4700.109793 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.46830 -48.11981 -47.70222 -41.95640 -40.80178 -37.86986 -37.45979 -34.86077 -33.77347 -33.08966 -32.40487 -29.90537 -26.83887 -26.44281 -26.05954 -24.03524 -23.06955 -22.76722 -22.18318 -19.47637 -19.24053 -18.71727 -18.71382 -18.24722 -17.73616 -17.71637 -17.23410 -16.86857 -16.67502 -16.01594 -15.63429 -15.31570 -15.10237 -14.94311 -14.63818 -14.52433 -14.51558 -14.32913 -14.23913 -14.00323 -13.94270 -13.79473 -13.64184 -13.22356 -13.02664 -12.98058 -12.81373 -12.57011 -12.49833 -12.43814 -12.09604 -11.92432 -11.58956 -11.46690 -10.98290 -10.62710 -10.56930 -10.23653 -9.38650 -8.12451 -6.35533 -0.55730 0.15316 1.26047 1.45874 1.47357 1.49052 1.61093 2.40063 2.47489 2.63324 2.90834 3.00018 3.36915 3.63120 3.75555 3.81820 3.82970 3.92307 3.96230 4.00435 4.03746 4.16770 4.27289 4.37648 4.49962 4.57501 4.74148 4.79641 4.84901 4.86590 5.01133 5.08029 5.10818 5.31462 5.52886 5.63752 5.79095 6.17236 6.31643 6.40862 6.73113 6.83620 7.33158 8.79782 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014051 B = 0.003503 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.236091 B = 7992.266995 C = 9075.475829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.350 6.350 4 C 0.527 3.473 5 O -0.518 6.518 6 C 0.059 3.941 7 C -0.102 4.102 8 C -0.068 4.068 9 C -0.108 4.108 10 C 0.119 3.881 11 C 0.094 3.906 12 N -0.657 5.657 13 C 0.198 3.802 14 H 0.064 0.936 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.013 3.987 18 N -0.877 5.877 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.392 3.608 24 F -0.221 7.221 25 F -0.152 7.152 26 F -0.210 7.210 27 N -0.462 5.462 28 H 0.109 0.891 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.167 0.833 34 H 0.192 0.808 35 H 0.172 0.828 36 H 0.043 0.957 37 H 0.108 0.892 38 H 0.335 0.665 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.525 -12.757 5.734 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.266 6.266 4 C 0.371 3.629 5 O -0.408 6.408 6 C -0.077 4.077 7 C -0.123 4.123 8 C -0.093 4.093 9 C -0.128 4.128 10 C -0.022 4.022 11 C -0.036 4.036 12 N -0.286 5.286 13 C 0.086 3.914 14 H 0.082 0.918 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.191 4.191 18 N -0.513 5.513 19 Si 0.796 3.204 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.199 1.199 23 C 0.336 3.664 24 F -0.203 7.203 25 F -0.134 7.134 26 F -0.192 7.192 27 N -0.175 5.175 28 H 0.127 0.873 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.184 0.816 34 H 0.210 0.790 35 H 0.189 0.811 36 H 0.061 0.939 37 H 0.126 0.874 38 H 0.153 0.847 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.178 -12.734 5.665 16.688 hybrid contribution -0.902 -0.151 -0.304 0.964 sum 8.275 -12.885 5.361 16.225 Atomic orbital electron populations 1.21838 0.90980 1.04476 1.03274 1.23409 0.96862 0.78683 1.03188 1.86728 1.22982 1.34081 1.82768 1.21018 0.81113 0.88788 0.72003 1.90792 1.60917 1.41805 1.47258 1.20140 0.91593 0.89863 1.06098 1.22345 0.93300 1.00631 0.95994 1.22095 1.02818 0.89956 0.94473 1.22645 0.92347 1.02968 0.94863 1.21226 0.94067 0.90566 0.96304 1.21158 0.96712 0.94892 0.90794 1.60726 1.43107 1.09206 1.15588 1.20299 0.80189 0.90241 1.00680 0.91800 1.21058 1.23998 1.13205 0.98341 0.90776 1.25879 0.94141 0.97673 1.01360 1.70486 1.22573 1.23367 1.34862 0.85297 0.77796 0.78298 0.79027 1.18873 1.21186 1.19908 1.24334 0.95694 0.75115 0.71297 1.93001 1.97311 1.84676 1.45361 1.93384 1.71454 1.52983 1.95540 1.92979 1.94284 1.68859 1.63102 1.67301 1.40997 0.99573 1.09624 0.87298 0.91830 0.92159 0.90580 0.90271 0.81595 0.79038 0.81072 0.93862 0.87376 0.84712 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 10.29 71.98 0.74 -1.86 16 2 C 0.05 1.11 6.19 71.98 0.45 1.56 16 3 O -0.35 -10.46 10.04 -55.85 -0.56 -11.02 16 4 C 0.53 15.69 7.95 70.43 0.56 16.25 16 5 O -0.52 -15.60 16.11 20.07 0.32 -15.28 16 6 C 0.06 1.70 6.75 41.88 0.28 1.98 16 7 C -0.10 -2.14 9.63 22.62 0.22 -1.92 16 8 C -0.07 -1.11 10.17 22.44 0.23 -0.88 16 9 C -0.11 -2.28 9.73 22.44 0.22 -2.06 16 10 C 0.12 3.54 6.29 42.69 0.27 3.80 16 11 C 0.09 3.17 5.69 85.56 0.49 3.65 16 12 N -0.66 -26.60 6.22 -499.44 -3.10 -29.70 16 13 C 0.20 9.41 2.26 44.17 0.10 9.51 16 14 H 0.06 3.16 7.80 -2.38 -0.02 3.14 16 15 C -0.53 -27.36 8.58 25.60 0.22 -27.14 16 16 H 0.07 3.84 7.81 -2.91 -0.02 3.82 16 17 C 0.01 0.69 5.20 84.66 0.44 1.13 16 18 N -0.88 -47.84 9.50 21.45 0.20 -47.63 16 19 Si 0.97 41.77 29.54 68.60 2.03 43.79 16 20 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 C 0.39 19.49 2.74 71.98 0.20 19.69 16 24 F -0.22 -10.25 15.04 44.97 0.68 -9.57 16 25 F -0.15 -8.34 12.91 44.97 0.58 -7.76 16 26 F -0.21 -10.55 16.31 44.97 0.73 -9.81 16 27 N -0.46 -15.17 10.03 -173.12 -1.74 -16.90 16 28 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 33 H 0.17 2.78 7.64 -2.91 -0.02 2.76 16 34 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.04 1.62 6.03 -2.39 -0.01 1.61 16 37 H 0.11 3.20 7.96 -2.39 -0.02 3.18 16 38 H 0.33 14.29 7.88 -89.69 -0.71 13.58 16 39 H 0.26 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -65.12 348.73 3.95 -61.16 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.40 Total: 19.02 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 4.41 Total: 23.71 kcal Atomic # 7 Polarization: -89.60 SS G_CDS: -4.64 Total: -94.24 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.24 Total: -26.30 kcal Atomic # 9 Polarization: -29.14 SS G_CDS: 1.99 Total: -27.15 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Total: -65.12 3.95 -61.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896696037.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.550 kcal (2) G-P(sol) polarization free energy of solvation -65.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds