Wall clock time and date at job start Tue Mar 31 2020 16:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.37844 * 120.00538 * 2 1 4 4 N 1.30236 * 124.74046 * 359.97438 * 3 2 1 5 5 C 1.30877 * 117.25884 * 180.02562 * 4 3 2 6 6 C 1.36704 * 114.03493 * 359.97438 * 5 4 3 7 7 C 1.46227 * 126.11412 * 180.02562 * 6 5 4 8 8 O 1.21747 * 119.99558 * 7.56513 * 7 6 5 9 9 N 1.34779 * 119.99905 * 187.56249 * 7 6 5 10 10 C 1.46495 * 119.99966 * 357.75709 * 9 7 6 11 11 C 1.50702 * 109.46820 * 277.66942 * 10 9 7 12 12 H 1.08006 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00073 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99930 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00043 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47236 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47002 * 120.00186 * 15 13 11 18 18 H 1.48502 * 109.47022 * 240.00093 * 15 13 11 19 19 C 1.46495 * 119.99540 * 177.74887 * 9 7 6 20 20 C 1.50700 * 109.46922 * 90.00643 * 19 9 7 21 21 C 1.38226 * 119.62432 * 94.97481 * 20 19 9 22 22 C 1.38626 * 119.16337 * 179.79337 * 21 20 19 23 23 C 1.38668 * 118.42176 * 0.46838 * 22 21 20 24 24 C 1.38184 * 119.16308 * 359.51095 * 23 22 21 25 25 N 1.31860 * 119.61434 * 274.99817 * 20 19 9 26 26 S 1.70914 * 124.75383 * 180.31237 * 3 2 1 27 27 H 1.09002 * 109.47342 * 59.99604 * 1 2 3 28 28 H 1.09004 * 109.47779 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47454 * 300.00347 * 1 2 3 30 30 H 0.97000 * 120.00412 * 179.97438 * 2 1 3 31 31 H 1.08001 * 122.98337 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47677 * 37.67025 * 10 9 7 33 33 H 1.09005 * 109.47064 * 157.67311 * 10 9 7 34 34 H 0.96995 * 119.99974 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47688 * 330.00515 * 19 9 7 36 36 H 1.09002 * 109.47348 * 209.99969 * 19 9 7 37 37 H 1.08009 * 120.41568 * 0.02562 * 21 20 19 38 38 H 1.08003 * 120.79030 * 180.23336 * 22 21 20 39 39 H 1.08002 * 120.42237 * 179.78539 * 23 22 21 40 40 H 1.07993 * 119.61969 * 180.25288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1542 1.1937 0.0000 4 7 1.5986 2.3716 -0.0005 5 6 2.3951 3.4101 -0.0009 6 6 3.7246 3.0921 -0.0003 7 6 4.8376 4.0405 0.0000 8 8 4.6230 5.2308 0.1384 9 7 6.1011 3.5968 -0.1529 10 6 6.3638 2.1603 -0.2702 11 6 6.4064 1.5437 1.1043 12 1 6.2526 2.1602 1.9777 13 6 6.6416 0.1926 1.2468 14 7 6.8293 -0.5579 0.1833 15 14 6.6950 -0.5716 2.9505 16 1 6.4560 0.4793 3.9721 17 1 5.6435 -1.6145 3.0584 18 1 8.0277 -1.1871 3.1753 19 6 7.2115 4.5510 -0.2022 20 6 7.7318 4.7886 1.1921 21 6 8.8106 4.0574 1.6527 22 6 9.2840 4.2868 2.9352 23 6 8.6457 5.2404 3.7137 24 6 7.5729 5.9328 3.1853 25 7 7.1522 5.6914 1.9588 26 16 3.8575 1.3352 -0.0077 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 2.0341 4.4280 -0.0017 32 1 5.5712 1.6924 -0.8539 33 1 7.3213 2.0055 -0.7676 34 1 6.9944 -1.5085 0.2835 35 1 6.8627 5.4930 -0.6252 36 1 8.0104 4.1471 -0.8240 37 1 9.2811 3.3193 1.0199 38 1 10.1276 3.7332 3.3204 39 1 8.9854 5.4427 4.7187 40 1 7.0729 6.6800 3.7836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:04 Heat of formation + Delta-G solvation = 62.252517 kcal Electronic energy + Delta-G solvation = -26347.414450 eV Core-core repulsion = 22675.610104 eV Total energy + Delta-G solvation = -3671.804345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.87960 -39.04943 -38.30311 -35.27400 -35.02682 -33.02717 -32.01984 -31.40408 -29.13891 -27.76981 -26.91395 -25.82013 -23.65948 -23.21041 -22.86666 -21.86713 -20.14353 -18.66549 -17.72088 -16.90861 -16.54925 -16.37324 -15.94305 -15.51121 -15.14285 -14.83743 -14.64161 -14.57252 -14.10342 -13.90276 -13.71093 -13.14778 -12.95340 -12.79855 -12.65941 -12.44615 -12.31571 -12.08500 -11.86379 -11.57206 -11.34706 -11.10573 -10.93437 -10.36312 -10.27412 -9.92840 -9.74406 -9.44948 -9.18551 -8.97991 -8.92668 -8.57889 -8.47843 -8.21865 -7.85540 -6.99632 -6.38474 -4.39627 1.39007 1.51667 1.73972 2.12369 2.69909 3.08765 3.18686 3.25361 3.41581 3.70743 3.86933 4.15188 4.20262 4.44849 4.75898 4.95187 5.15115 5.19295 5.26405 5.33808 5.43020 5.51481 5.66214 5.68816 5.89491 5.92478 5.95973 6.14302 6.20296 6.24143 6.48452 6.53890 6.58443 6.63627 6.87025 7.11507 7.36594 7.39973 7.50841 7.58400 7.76463 8.21467 8.51379 8.61803 8.66227 9.06107 9.21639 10.65427 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.005465 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.467061 B = 5122.729858 C = 6559.625654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.701 5.701 3 C 0.210 3.790 4 N -0.572 5.572 5 C 0.144 3.856 6 C -0.354 4.354 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.598 5.598 10 C 0.231 3.769 11 C -0.523 4.523 12 H 0.066 0.934 13 C 0.076 3.924 14 N -0.879 5.879 15 Si 0.885 3.115 16 H -0.270 1.270 17 H -0.279 1.279 18 H -0.280 1.280 19 C 0.175 3.825 20 C 0.124 3.876 21 C -0.137 4.137 22 C -0.083 4.083 23 C -0.181 4.181 24 C 0.089 3.911 25 N -0.458 5.458 26 S 0.323 5.677 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.412 0.588 31 H 0.170 0.830 32 H 0.043 0.957 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.028 1.040 0.476 1.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.340 5.340 3 C -0.153 4.153 4 N -0.297 5.297 5 C -0.018 4.018 6 C -0.481 4.481 7 C 0.392 3.608 8 O -0.427 6.427 9 N -0.329 5.329 10 C 0.108 3.892 11 C -0.566 4.566 12 H 0.084 0.916 13 C -0.129 4.129 14 N -0.516 5.516 15 Si 0.712 3.288 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.206 1.206 19 C 0.051 3.949 20 C -0.016 4.016 21 C -0.157 4.157 22 C -0.110 4.110 23 C -0.202 4.202 24 C -0.069 4.069 25 N -0.167 5.167 26 S 0.583 5.417 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.187 0.813 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.153 0.847 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.797 1.143 0.098 1.397 hybrid contribution 0.603 -0.725 1.636 1.888 sum -0.194 0.418 1.734 1.794 Atomic orbital electron populations 1.21428 0.79878 1.01048 1.01806 1.43440 1.05883 1.03510 1.81175 1.25790 1.01507 0.89871 0.98096 1.66165 1.39547 0.96739 1.27235 1.21681 0.86998 0.97610 0.95521 1.25447 0.98194 0.97261 1.27243 1.16671 0.81653 0.86659 0.75843 1.90762 1.84583 1.16004 1.51358 1.47911 1.04580 1.08683 1.71731 1.19646 0.97412 0.74293 0.97847 1.21513 1.49052 0.93483 0.92514 0.91615 1.24844 0.94263 0.96813 0.96965 1.69913 1.46721 1.06592 1.28358 0.86595 0.78060 0.79542 0.84568 1.19464 1.20495 1.20586 1.20095 0.89483 0.94640 0.90728 1.21661 0.91409 0.91312 0.97185 1.21973 0.97698 0.99285 0.96779 1.21485 0.99101 0.96345 0.94024 1.22041 0.98599 0.98732 1.00787 1.22668 0.93928 0.98142 0.92127 1.67588 1.27598 1.16355 1.05125 1.86765 0.90231 0.99343 1.65341 0.92861 0.91459 0.92906 0.75223 0.81267 0.94056 0.93059 0.92216 0.89055 0.89350 0.84674 0.85428 0.85641 0.83562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.30 10.95 59.84 0.66 1.95 16 2 N -0.70 -10.63 5.84 -69.22 -0.40 -11.03 16 3 C 0.21 3.97 8.05 -87.97 -0.71 3.26 16 4 N -0.57 -11.47 10.06 -14.77 -0.15 -11.62 16 5 C 0.14 2.95 11.15 -18.51 -0.21 2.75 16 6 C -0.35 -7.67 6.26 -36.93 -0.23 -7.90 16 7 C 0.60 13.65 7.55 -13.05 -0.10 13.55 16 8 O -0.55 -13.27 16.48 5.15 0.08 -13.19 16 9 N -0.60 -12.58 2.46 -178.15 -0.44 -13.01 16 10 C 0.23 5.05 4.79 -5.20 -0.02 5.02 16 11 C -0.52 -12.30 7.03 -34.44 -0.24 -12.54 16 12 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 13 C 0.08 1.79 5.08 -17.82 -0.09 1.70 16 14 N -0.88 -20.96 13.29 55.43 0.74 -20.22 16 15 Si 0.89 19.19 29.54 -169.99 -5.02 14.17 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 19 C 0.17 3.21 5.73 -5.20 -0.03 3.18 16 20 C 0.12 2.31 6.36 -82.58 -0.53 1.78 16 21 C -0.14 -2.30 9.72 -39.44 -0.38 -2.68 16 22 C -0.08 -1.24 10.18 -39.28 -0.40 -1.64 16 23 C -0.18 -2.61 10.11 -39.44 -0.40 -3.01 16 24 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 25 N -0.46 -8.97 10.27 -9.47 -0.10 -9.07 16 26 S 0.32 6.59 16.18 -107.50 -1.74 4.85 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.41 5.40 8.95 -40.82 -0.37 5.04 16 31 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 32 H 0.04 0.96 4.46 -22.43 -0.10 0.86 16 33 H 0.05 1.13 7.81 -51.93 -0.41 0.72 16 34 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 35 H 0.09 1.70 7.45 -51.93 -0.39 1.31 16 36 H 0.09 1.36 7.75 -51.93 -0.40 0.96 16 37 H 0.14 2.12 8.06 -52.48 -0.42 1.69 16 38 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 39 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 40 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -29.99 356.84 -9.12 -39.11 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -4.59 Total: 7.95 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -2.88 Total: 6.69 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.35 Total: -64.96 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.74 Total: 4.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.99 -9.12 -39.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.364 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds