Wall clock time and date at job start Tue Mar 31 2020 16:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.37844 * 120.00538 * 2 1 4 4 N 1.30236 * 124.74046 * 359.97438 * 3 2 1 5 5 C 1.30877 * 117.25884 * 180.02562 * 4 3 2 6 6 C 1.36704 * 114.03493 * 359.97438 * 5 4 3 7 7 C 1.46227 * 126.11412 * 180.02562 * 6 5 4 8 8 O 1.21747 * 119.99558 * 7.56513 * 7 6 5 9 9 N 1.34779 * 119.99905 * 187.56249 * 7 6 5 10 10 C 1.46495 * 119.99966 * 357.75709 * 9 7 6 11 11 C 1.50702 * 109.46820 * 277.66942 * 10 9 7 12 12 H 1.08006 * 120.00134 * 0.02562 * 11 10 9 13 13 C 1.37883 * 120.00073 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99930 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00043 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47236 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47002 * 120.00186 * 15 13 11 18 18 H 1.48502 * 109.47022 * 240.00093 * 15 13 11 19 19 C 1.46495 * 119.99540 * 177.74887 * 9 7 6 20 20 C 1.50700 * 109.46922 * 90.00643 * 19 9 7 21 21 C 1.38226 * 119.62432 * 94.97481 * 20 19 9 22 22 C 1.38626 * 119.16337 * 179.79337 * 21 20 19 23 23 C 1.38668 * 118.42176 * 0.46838 * 22 21 20 24 24 C 1.38184 * 119.16308 * 359.51095 * 23 22 21 25 25 N 1.31860 * 119.61434 * 274.99817 * 20 19 9 26 26 S 1.70914 * 124.75383 * 180.31237 * 3 2 1 27 27 H 1.09002 * 109.47342 * 59.99604 * 1 2 3 28 28 H 1.09004 * 109.47779 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47454 * 300.00347 * 1 2 3 30 30 H 0.97000 * 120.00412 * 179.97438 * 2 1 3 31 31 H 1.08001 * 122.98337 * 179.97438 * 5 4 3 32 32 H 1.08995 * 109.47677 * 37.67025 * 10 9 7 33 33 H 1.09005 * 109.47064 * 157.67311 * 10 9 7 34 34 H 0.96995 * 119.99974 * 180.02562 * 14 13 11 35 35 H 1.08999 * 109.47688 * 330.00515 * 19 9 7 36 36 H 1.09002 * 109.47348 * 209.99969 * 19 9 7 37 37 H 1.08009 * 120.41568 * 0.02562 * 21 20 19 38 38 H 1.08003 * 120.79030 * 180.23336 * 22 21 20 39 39 H 1.08002 * 120.42237 * 179.78539 * 23 22 21 40 40 H 1.07993 * 119.61969 * 180.25288 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1542 1.1937 0.0000 4 7 1.5986 2.3716 -0.0005 5 6 2.3951 3.4101 -0.0009 6 6 3.7246 3.0921 -0.0003 7 6 4.8376 4.0405 0.0000 8 8 4.6230 5.2308 0.1384 9 7 6.1011 3.5968 -0.1529 10 6 6.3638 2.1603 -0.2702 11 6 6.4064 1.5437 1.1043 12 1 6.2526 2.1602 1.9777 13 6 6.6416 0.1926 1.2468 14 7 6.8293 -0.5579 0.1833 15 14 6.6950 -0.5716 2.9505 16 1 6.4560 0.4793 3.9721 17 1 5.6435 -1.6145 3.0584 18 1 8.0277 -1.1871 3.1753 19 6 7.2115 4.5510 -0.2022 20 6 7.7318 4.7886 1.1921 21 6 8.8106 4.0574 1.6527 22 6 9.2840 4.2868 2.9352 23 6 8.6457 5.2404 3.7137 24 6 7.5729 5.9328 3.1853 25 7 7.1522 5.6914 1.9588 26 16 3.8575 1.3352 -0.0077 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3635 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.9500 -0.8400 0.0004 31 1 2.0341 4.4280 -0.0017 32 1 5.5712 1.6924 -0.8539 33 1 7.3213 2.0055 -0.7676 34 1 6.9944 -1.5085 0.2835 35 1 6.8627 5.4930 -0.6252 36 1 8.0104 4.1471 -0.8240 37 1 9.2811 3.3193 1.0199 38 1 10.1276 3.7332 3.3204 39 1 8.9854 5.4427 4.7187 40 1 7.0729 6.6800 3.7836 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:04 Heat of formation + Delta-G solvation = 43.597636 kcal Electronic energy + Delta-G solvation = -26348.223386 eV Core-core repulsion = 22675.610104 eV Total energy + Delta-G solvation = -3672.613282 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.27095 -40.57981 -39.87366 -36.84097 -36.51211 -34.73381 -33.32333 -32.80408 -30.62517 -29.46949 -28.22765 -27.25471 -25.24584 -24.74535 -24.23012 -23.23692 -21.66447 -20.14262 -19.31165 -18.67386 -18.06116 -17.73321 -17.41692 -16.89806 -16.52191 -16.35325 -16.32337 -15.99799 -15.50976 -15.38600 -15.24300 -14.53086 -14.38234 -14.26988 -14.06970 -13.98176 -13.79129 -13.55200 -13.12917 -13.01663 -12.80662 -12.66312 -12.53116 -12.13266 -11.90108 -11.72876 -11.14732 -10.94949 -10.70234 -10.66391 -10.30324 -10.09263 -9.86791 -9.84546 -9.50391 -8.48997 -8.18040 -6.23375 -0.19256 0.24711 0.50594 0.57444 1.10224 1.36963 1.43957 1.51566 1.79484 2.25715 2.40687 2.47105 2.52411 3.09250 3.12915 3.49358 3.78889 3.87281 4.03652 4.09861 4.30491 4.35144 4.43913 4.52578 4.61857 4.66356 4.67396 4.78447 4.84510 4.93550 4.95206 5.10883 5.12685 5.31095 5.36121 5.66392 5.80968 5.90668 5.97777 5.98418 6.24886 6.50553 6.78891 7.12758 7.23650 7.31847 7.42565 8.85187 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.011652 B = 0.005465 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2402.467061 B = 5122.729858 C = 6559.625654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.688 5.688 3 C 0.223 3.777 4 N -0.583 5.583 5 C 0.152 3.848 6 C -0.382 4.382 7 C 0.596 3.404 8 O -0.574 6.574 9 N -0.595 5.595 10 C 0.241 3.759 11 C -0.519 4.519 12 H 0.037 0.963 13 C 0.057 3.943 14 N -0.892 5.892 15 Si 0.924 3.076 16 H -0.286 1.286 17 H -0.273 1.273 18 H -0.274 1.274 19 C 0.170 3.830 20 C 0.100 3.900 21 C -0.147 4.147 22 C -0.086 4.086 23 C -0.170 4.170 24 C 0.071 3.929 25 N -0.499 5.499 26 S 0.302 5.698 27 H 0.050 0.950 28 H 0.110 0.890 29 H 0.046 0.954 30 H 0.423 0.577 31 H 0.179 0.821 32 H 0.039 0.961 33 H 0.050 0.950 34 H 0.272 0.728 35 H 0.081 0.919 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -0.461 1.505 1.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.326 5.326 3 C -0.142 4.142 4 N -0.309 5.309 5 C -0.011 4.011 6 C -0.509 4.509 7 C 0.386 3.614 8 O -0.457 6.457 9 N -0.326 5.326 10 C 0.117 3.883 11 C -0.561 4.561 12 H 0.055 0.945 13 C -0.147 4.147 14 N -0.530 5.530 15 Si 0.750 3.250 16 H -0.212 1.212 17 H -0.198 1.198 18 H -0.199 1.199 19 C 0.047 3.953 20 C -0.038 4.038 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.190 4.190 24 C -0.086 4.086 25 N -0.209 5.209 26 S 0.561 5.439 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.065 0.935 30 H 0.261 0.739 31 H 0.196 0.804 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.131 0.869 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.182 0.818 40 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -0.764 -0.409 1.118 1.415 hybrid contribution 0.480 -0.292 1.349 1.462 sum -0.285 -0.701 2.468 2.581 Atomic orbital electron populations 1.21668 0.77680 1.03797 1.01335 1.43728 1.07318 1.02669 1.78908 1.25879 1.01048 0.90787 0.96472 1.66244 1.39202 0.96935 1.28480 1.21902 0.86794 0.98294 0.94118 1.25420 0.98355 0.97714 1.29434 1.16895 0.82365 0.86552 0.75623 1.90725 1.85038 1.16993 1.52959 1.47929 1.04868 1.08768 1.70991 1.19480 0.97078 0.74643 0.97053 1.21250 1.49490 0.93353 0.91991 0.94463 1.25132 0.94117 0.96845 0.98649 1.69939 1.47098 1.06880 1.29081 0.86023 0.78404 0.78603 0.81932 1.21186 1.19808 1.19892 1.20280 0.89366 0.93842 0.91807 1.21630 0.92595 0.92418 0.97176 1.22115 0.97398 0.99230 0.97988 1.21925 0.99704 0.96328 0.93202 1.22439 0.97133 0.97251 1.02181 1.23143 0.94900 0.99027 0.91541 1.67518 1.29032 1.17535 1.06788 1.86613 0.91616 0.98891 1.66772 0.93096 0.87196 0.93518 0.73903 0.80420 0.94408 0.93247 0.91844 0.90061 0.86857 0.84094 0.82270 0.81803 0.81620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.19 10.95 127.77 1.40 3.59 16 2 N -0.69 -19.23 5.84 -372.90 -2.18 -21.41 16 3 C 0.22 8.17 8.05 179.42 1.44 9.61 16 4 N -0.58 -22.96 10.06 -200.64 -2.02 -24.98 16 5 C 0.15 6.26 11.15 84.48 0.94 7.20 16 6 C -0.38 -16.87 6.26 23.99 0.15 -16.72 16 7 C 0.60 27.89 7.55 86.32 0.65 28.54 16 8 O -0.57 -28.99 16.48 -4.50 -0.07 -29.06 16 9 N -0.60 -25.77 2.46 -835.74 -2.06 -27.83 16 10 C 0.24 10.66 4.79 85.63 0.41 11.07 16 11 C -0.52 -24.55 7.03 25.60 0.18 -24.37 16 12 H 0.04 1.97 7.81 -2.91 -0.02 1.95 16 13 C 0.06 2.62 5.08 84.66 0.43 3.05 16 14 N -0.89 -41.78 13.29 21.45 0.28 -41.49 16 15 Si 0.92 38.49 29.54 68.60 2.03 40.51 16 16 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 19 C 0.17 6.46 5.73 85.63 0.49 6.95 16 20 C 0.10 3.81 6.36 42.55 0.27 4.09 16 21 C -0.15 -4.86 9.72 22.36 0.22 -4.64 16 22 C -0.09 -2.39 10.18 22.47 0.23 -2.16 16 23 C -0.17 -4.53 10.11 22.36 0.23 -4.30 16 24 C 0.07 2.29 11.18 84.67 0.95 3.24 16 25 N -0.50 -19.96 10.27 -183.88 -1.89 -21.85 16 26 S 0.30 12.32 16.18 -56.49 -0.91 11.41 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.42 9.98 8.95 -92.71 -0.83 9.15 16 31 H 0.18 6.86 8.06 -2.91 -0.02 6.84 16 32 H 0.04 1.78 4.46 -21.15 -0.09 1.68 16 33 H 0.05 2.19 7.81 -2.38 -0.02 2.17 16 34 H 0.27 12.11 8.31 -92.71 -0.77 11.34 16 35 H 0.08 3.18 7.45 -2.39 -0.02 3.17 16 36 H 0.11 3.56 7.75 -2.39 -0.02 3.54 16 37 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 39 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 40 H 0.17 4.41 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -64.93 356.84 1.34 -63.59 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.17 Total: 25.97 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 7.99 Total: 25.15 kcal Atomic # 7 Polarization: -129.70 SS G_CDS: -7.86 Total: -137.55 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -0.07 Total: -29.06 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.51 kcal Atomic # 16 Polarization: 12.32 SS G_CDS: -0.91 Total: 11.41 kcal Total: -64.93 1.34 -63.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.187 kcal (2) G-P(sol) polarization free energy of solvation -64.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds