Wall clock time and date at job start Tue Mar 31 2020 16:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34786 * 119.99970 * 2 1 4 4 O 1.21279 * 119.99736 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99640 * 359.72804 * 3 2 1 6 6 S 1.81010 * 109.46917 * 180.27236 * 5 3 2 7 7 C 1.76197 * 99.99707 * 180.02562 * 6 5 3 8 8 H 1.07995 * 120.00540 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99778 * 180.02562 * 7 6 5 10 10 N 1.31638 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00250 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47003 * 89.99683 * 11 9 7 13 13 H 1.48497 * 109.47265 * 209.99401 * 11 9 7 14 14 H 1.48498 * 109.46822 * 329.99849 * 11 9 7 15 15 C 1.46497 * 120.00448 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.47633 * 183.48399 * 15 2 1 17 17 C 1.50707 * 109.46817 * 303.48414 * 15 2 1 18 18 N 1.33234 * 125.52847 * 44.68608 * 17 15 2 19 19 C 1.30830 * 109.82957 * 179.85706 * 18 17 15 20 20 N 1.34428 * 108.07757 * 0.40472 * 19 18 17 21 21 H 0.96997 * 126.82527 * 179.78291 * 20 19 18 22 22 N 1.30714 * 125.52136 * 225.00067 * 17 15 2 23 23 C 1.50699 * 109.47338 * 63.47764 * 15 2 1 24 24 C 1.38240 * 119.99967 * 125.33243 * 23 15 2 25 25 C 1.38230 * 119.99800 * 179.79172 * 24 23 15 26 26 C 1.38236 * 120.00199 * 0.44157 * 25 24 23 27 27 C 1.38237 * 120.00020 * 359.81481 * 26 25 24 28 28 C 1.38235 * 119.99778 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47385 * 84.54750 * 1 2 3 30 30 H 1.08995 * 109.47252 * 204.55029 * 1 2 3 31 31 H 1.08998 * 109.47212 * 324.54947 * 1 2 3 32 32 H 1.08999 * 109.47235 * 300.26944 * 5 3 2 33 33 H 1.08998 * 109.47557 * 60.27169 * 5 3 2 34 34 H 0.96995 * 120.00373 * 180.02562 * 10 9 7 35 35 H 1.08006 * 125.96052 * 180.19765 * 19 18 17 36 36 H 1.07994 * 119.99701 * 0.02562 * 24 23 15 37 37 H 1.08001 * 120.00123 * 180.27665 * 25 24 23 38 38 H 1.07998 * 120.00131 * 179.83112 * 26 25 24 39 39 H 1.07996 * 120.00370 * 179.97438 * 27 26 25 40 40 H 1.08002 * 119.99892 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0062 6 16 2.5615 3.8481 -0.0127 7 6 1.4414 5.2082 -0.0184 8 1 0.3761 5.0305 -0.0177 9 6 1.9280 6.5080 -0.0249 10 7 3.2265 6.7247 -0.0263 11 14 0.7406 7.9500 -0.0317 12 1 0.4262 8.3390 1.3667 13 1 1.3617 9.0995 -0.7374 14 1 -0.5102 7.5579 -0.7295 15 6 2.1975 -1.2686 -0.0006 16 1 3.2675 -1.0705 0.0620 17 6 1.7698 -2.0962 1.1842 18 7 0.5132 -2.2807 1.5865 19 6 0.4941 -3.0533 2.6421 20 7 1.7631 -3.3763 2.9456 21 1 2.0610 -3.9351 3.6804 22 7 2.5721 -2.7445 1.9870 23 6 1.8993 -2.0204 -1.2722 24 6 2.9350 -2.4418 -2.0850 25 6 2.6616 -3.1351 -3.2492 26 6 1.3523 -3.3991 -3.6053 27 6 0.3163 -2.9731 -2.7951 28 6 0.5899 -2.2835 -1.6287 29 1 -0.3634 0.0977 -1.0230 30 1 -0.3633 -0.9347 0.4270 31 1 -0.3633 0.8371 0.5960 32 1 0.7587 2.5258 -0.8964 33 1 0.7586 2.5343 0.8835 34 1 3.5666 7.6331 -0.0305 35 1 -0.3873 -3.3728 3.1784 36 1 3.9578 -2.2327 -1.8086 37 1 3.4709 -3.4683 -3.8821 38 1 1.1386 -3.9384 -4.5163 39 1 -0.7066 -3.1789 -3.0734 40 1 -0.2194 -1.9510 -0.9955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909476305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:54 Heat of formation + Delta-G solvation = 98.201381 kcal Electronic energy + Delta-G solvation = -25465.438325 eV Core-core repulsion = 21795.192839 eV Total energy + Delta-G solvation = -3670.245486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.45005 -39.99174 -38.71529 -35.76048 -33.01102 -32.38817 -32.24438 -31.09185 -30.95901 -29.21974 -27.43182 -25.75973 -25.32600 -23.14190 -22.46663 -22.08288 -20.64247 -19.28041 -18.47386 -17.62888 -16.95784 -16.67139 -16.10975 -15.72321 -15.45294 -15.15211 -14.81806 -14.78683 -14.75903 -13.96700 -13.61077 -13.55875 -13.12275 -12.95530 -12.65641 -12.50276 -12.41454 -12.17220 -12.06224 -11.81964 -11.28709 -11.03213 -10.98824 -10.97504 -10.73518 -10.40867 -10.23867 -10.00473 -9.76182 -9.33905 -9.02720 -8.96480 -8.85903 -8.55247 -8.17929 -6.45411 -6.17650 -3.87800 1.14263 1.35283 1.39561 2.32930 2.55855 3.00767 3.09501 3.25124 3.29279 3.33489 3.61065 3.68723 3.95311 4.24080 4.39726 4.69775 4.73232 4.83151 4.94589 4.99684 5.07931 5.17367 5.36279 5.40819 5.44855 5.56601 5.65695 5.72697 5.80714 5.87471 5.96677 6.00194 6.03816 6.18995 6.24057 6.37909 6.43989 6.49000 6.63987 6.75696 6.91724 7.55910 7.63772 7.79221 8.39362 8.56333 9.27565 10.89792 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.003127 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.154314 B = 8951.350235 C = 9827.309160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.605 5.605 3 C 0.537 3.463 4 O -0.515 6.515 5 C -0.146 4.146 6 S -0.061 6.061 7 C -0.534 4.534 8 H 0.073 0.927 9 C 0.074 3.926 10 N -0.868 5.868 11 Si 0.918 3.082 12 H -0.277 1.277 13 H -0.282 1.282 14 H -0.272 1.272 15 C 0.277 3.723 16 H 0.129 0.871 17 C 0.232 3.768 18 N -0.533 5.533 19 C 0.261 3.739 20 N -0.484 5.484 21 H 0.442 0.558 22 N -0.299 5.299 23 C -0.094 4.094 24 C -0.096 4.096 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.127 4.127 28 C -0.099 4.099 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.224 0.776 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.697 -25.516 1.236 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.340 5.340 3 C 0.325 3.675 4 O -0.389 6.389 5 C -0.296 4.296 6 S 0.165 5.835 7 C -0.682 4.682 8 H 0.091 0.909 9 C -0.136 4.136 10 N -0.503 5.503 11 Si 0.744 3.256 12 H -0.203 1.203 13 H -0.208 1.208 14 H -0.197 1.197 15 C 0.169 3.831 16 H 0.147 0.853 17 C -0.052 4.052 18 N -0.262 5.262 19 C -0.038 4.038 20 N -0.201 5.201 21 H 0.288 0.712 22 N -0.128 5.128 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.142 4.142 26 C -0.135 4.135 27 C -0.145 4.145 28 C -0.117 4.117 29 H 0.070 0.930 30 H 0.130 0.870 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.271 -25.177 0.984 25.965 hybrid contribution -2.298 0.446 0.727 2.451 sum -8.568 -24.732 1.711 26.230 Atomic orbital electron populations 1.22354 0.79014 1.05443 1.01588 1.47738 1.07356 1.03743 1.75201 1.20449 0.87954 0.84459 0.74650 1.90687 1.13718 1.86636 1.47825 1.23525 1.04470 0.96693 1.04915 1.85388 1.08075 0.93306 1.96706 1.22863 0.94340 0.92202 1.58801 0.90921 1.24986 0.95650 0.98340 0.94583 1.70023 1.11732 1.21599 1.46972 0.86177 0.80318 0.80750 0.78308 1.20314 1.20776 1.19661 1.17763 0.99033 0.81079 0.85186 0.85331 1.24347 0.86988 0.96979 0.96902 1.70201 1.22402 1.19897 1.13674 1.26157 0.89712 0.93736 0.94170 1.48108 1.05631 1.40655 1.25749 0.71231 1.78069 1.17312 1.15022 1.02404 1.19802 0.94215 0.99624 0.95936 1.21093 0.98994 0.97115 0.94286 1.21101 0.96815 0.99404 0.96880 1.21186 0.92991 0.99838 0.99448 1.21142 0.99121 0.99102 0.95107 1.21437 0.96579 0.96916 0.96786 0.92954 0.87037 0.91324 0.89032 0.89169 0.92229 0.76032 0.85603 0.85921 0.86234 0.86067 0.84528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.75 7.84 59.84 0.47 1.22 16 2 N -0.61 -9.65 2.74 -176.61 -0.48 -10.14 16 3 C 0.54 10.86 7.69 -10.98 -0.08 10.77 16 4 O -0.51 -12.18 15.19 5.56 0.08 -12.10 16 5 C -0.15 -3.10 4.78 36.00 0.17 -2.93 16 6 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 7 C -0.53 -15.43 9.50 30.94 0.29 -15.14 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 10 N -0.87 -26.48 13.22 55.49 0.73 -25.74 16 11 Si 0.92 21.64 29.55 -169.99 -5.02 16.62 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.28 4.12 2.90 -70.23 -0.20 3.91 16 16 H 0.13 2.16 6.65 -51.93 -0.35 1.81 16 17 C 0.23 3.13 6.67 -156.86 -1.05 2.08 16 18 N -0.53 -5.90 8.06 -11.97 -0.10 -5.99 16 19 C 0.26 1.88 13.13 -90.66 -1.19 0.69 16 20 N -0.48 -3.87 7.45 29.53 0.22 -3.65 16 21 H 0.44 1.80 8.96 -182.33 -1.63 0.17 16 22 N -0.30 -3.91 12.80 32.42 0.41 -3.49 16 23 C -0.09 -1.24 4.95 -104.62 -0.52 -1.76 16 24 C -0.10 -1.20 9.67 -39.58 -0.38 -1.59 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 28 C -0.10 -1.16 8.29 -39.58 -0.33 -1.49 16 29 H 0.05 0.61 7.55 -51.93 -0.39 0.22 16 30 H 0.11 1.27 3.81 -51.93 -0.20 1.08 16 31 H 0.07 0.86 6.68 -51.93 -0.35 0.52 16 32 H 0.09 1.82 8.10 -51.92 -0.42 1.40 16 33 H 0.09 1.79 7.42 -51.92 -0.39 1.41 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.22 0.39 8.06 -52.48 -0.42 -0.03 16 36 H 0.13 1.49 7.95 -52.49 -0.42 1.07 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 39 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 40 H 0.14 1.50 4.72 -52.49 -0.25 1.25 16 LS Contribution 352.16 15.07 5.31 5.31 Total: -1.00 -38.11 352.16 -10.79 -48.90 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.62 Total: 1.41 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -4.11 Total: -7.19 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: 0.79 Total: -49.02 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.10 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -38.11 -10.79 -48.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909476305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.102 kcal (2) G-P(sol) polarization free energy of solvation -38.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds