Wall clock time and date at job start Tue Mar 31 2020 16:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.34786 * 119.99970 * 2 1 4 4 O 1.21279 * 119.99736 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.99640 * 359.72804 * 3 2 1 6 6 S 1.81010 * 109.46917 * 180.27236 * 5 3 2 7 7 C 1.76197 * 99.99707 * 180.02562 * 6 5 3 8 8 H 1.07995 * 120.00540 * 359.97438 * 7 6 5 9 9 C 1.38798 * 119.99778 * 180.02562 * 7 6 5 10 10 N 1.31638 * 120.00234 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 120.00250 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47003 * 89.99683 * 11 9 7 13 13 H 1.48497 * 109.47265 * 209.99401 * 11 9 7 14 14 H 1.48498 * 109.46822 * 329.99849 * 11 9 7 15 15 C 1.46497 * 120.00448 * 180.02562 * 2 1 3 16 16 H 1.08996 * 109.47633 * 183.48399 * 15 2 1 17 17 C 1.50707 * 109.46817 * 303.48414 * 15 2 1 18 18 N 1.33234 * 125.52847 * 44.68608 * 17 15 2 19 19 C 1.30830 * 109.82957 * 179.85706 * 18 17 15 20 20 N 1.34428 * 108.07757 * 0.40472 * 19 18 17 21 21 H 0.96997 * 126.82527 * 179.78291 * 20 19 18 22 22 N 1.30714 * 125.52136 * 225.00067 * 17 15 2 23 23 C 1.50699 * 109.47338 * 63.47764 * 15 2 1 24 24 C 1.38240 * 119.99967 * 125.33243 * 23 15 2 25 25 C 1.38230 * 119.99800 * 179.79172 * 24 23 15 26 26 C 1.38236 * 120.00199 * 0.44157 * 25 24 23 27 27 C 1.38237 * 120.00020 * 359.81481 * 26 25 24 28 28 C 1.38235 * 119.99778 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.47385 * 84.54750 * 1 2 3 30 30 H 1.08995 * 109.47252 * 204.55029 * 1 2 3 31 31 H 1.08998 * 109.47212 * 324.54947 * 1 2 3 32 32 H 1.08999 * 109.47235 * 300.26944 * 5 3 2 33 33 H 1.08998 * 109.47557 * 60.27169 * 5 3 2 34 34 H 0.96995 * 120.00373 * 180.02562 * 10 9 7 35 35 H 1.08006 * 125.96052 * 180.19765 * 19 18 17 36 36 H 1.07994 * 119.99701 * 0.02562 * 24 23 15 37 37 H 1.08001 * 120.00123 * 180.27665 * 25 24 23 38 38 H 1.07998 * 120.00131 * 179.83112 * 26 25 24 39 39 H 1.07996 * 120.00370 * 179.97438 * 27 26 25 40 40 H 1.08002 * 119.99892 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 -0.0062 6 16 2.5615 3.8481 -0.0127 7 6 1.4414 5.2082 -0.0184 8 1 0.3761 5.0305 -0.0177 9 6 1.9280 6.5080 -0.0249 10 7 3.2265 6.7247 -0.0263 11 14 0.7406 7.9500 -0.0317 12 1 0.4262 8.3390 1.3667 13 1 1.3617 9.0995 -0.7374 14 1 -0.5102 7.5579 -0.7295 15 6 2.1975 -1.2686 -0.0006 16 1 3.2675 -1.0705 0.0620 17 6 1.7698 -2.0962 1.1842 18 7 0.5132 -2.2807 1.5865 19 6 0.4941 -3.0533 2.6421 20 7 1.7631 -3.3763 2.9456 21 1 2.0610 -3.9351 3.6804 22 7 2.5721 -2.7445 1.9870 23 6 1.8993 -2.0204 -1.2722 24 6 2.9350 -2.4418 -2.0850 25 6 2.6616 -3.1351 -3.2492 26 6 1.3523 -3.3991 -3.6053 27 6 0.3163 -2.9731 -2.7951 28 6 0.5899 -2.2835 -1.6287 29 1 -0.3634 0.0977 -1.0230 30 1 -0.3633 -0.9347 0.4270 31 1 -0.3633 0.8371 0.5960 32 1 0.7587 2.5258 -0.8964 33 1 0.7586 2.5343 0.8835 34 1 3.5666 7.6331 -0.0305 35 1 -0.3873 -3.3728 3.1784 36 1 3.9578 -2.2327 -1.8086 37 1 3.4709 -3.4683 -3.8821 38 1 1.1386 -3.9384 -4.5163 39 1 -0.7066 -3.1789 -3.0734 40 1 -0.2194 -1.9510 -0.9955 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909476305.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:53 Heat of formation + Delta-G solvation = 73.760425 kcal Electronic energy + Delta-G solvation = -25466.498164 eV Core-core repulsion = 21795.192839 eV Total energy + Delta-G solvation = -3671.305325 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.25107 -41.21053 -39.86693 -37.04165 -34.57904 -34.06550 -33.07438 -31.94626 -31.83246 -30.70122 -28.55774 -27.69461 -26.76153 -23.89186 -23.28869 -22.92189 -21.80924 -20.52106 -19.63387 -19.22968 -18.14655 -17.91386 -17.22742 -16.89131 -16.87314 -16.38626 -16.18223 -15.90008 -15.78487 -15.57349 -14.87669 -14.55322 -14.41990 -14.41093 -13.88890 -13.61993 -13.50625 -13.37292 -13.28628 -13.15423 -12.89215 -12.84923 -12.60075 -12.15373 -11.85871 -11.73485 -11.29147 -11.13563 -11.12833 -10.92258 -10.70545 -10.27559 -9.88702 -9.79348 -9.73685 -8.67793 -8.33782 -6.12717 0.25726 0.50350 0.63329 1.21941 1.41516 1.43502 1.47195 1.56010 1.74556 1.79632 2.16722 2.27801 2.80251 3.00283 3.13683 3.25754 3.50097 3.71179 3.77957 4.00652 4.15893 4.19041 4.21404 4.29298 4.33570 4.39707 4.48700 4.62437 4.68201 4.74440 4.90466 5.03534 5.15850 5.17448 5.28831 5.42455 5.43120 5.54591 5.60923 5.64917 6.09081 6.18757 6.21216 6.24766 6.99582 7.04954 7.07116 8.75619 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.014108 B = 0.003127 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.154314 B = 8951.350235 C = 9827.309160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.591 5.591 3 C 0.533 3.467 4 O -0.562 6.562 5 C -0.118 4.118 6 S -0.150 6.150 7 C -0.545 4.545 8 H 0.084 0.916 9 C 0.014 3.986 10 N -0.912 5.912 11 Si 1.000 3.000 12 H -0.267 1.267 13 H -0.278 1.278 14 H -0.257 1.257 15 C 0.277 3.723 16 H 0.094 0.906 17 C 0.220 3.780 18 N -0.555 5.555 19 C 0.281 3.719 20 N -0.472 5.472 21 H 0.459 0.541 22 N -0.342 5.342 23 C -0.110 4.110 24 C -0.121 4.121 25 C -0.128 4.128 26 C -0.115 4.115 27 C -0.126 4.126 28 C -0.105 4.105 29 H 0.067 0.933 30 H 0.130 0.870 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.281 0.719 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.589 -27.042 1.190 29.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.324 5.324 3 C 0.321 3.679 4 O -0.440 6.440 5 C -0.268 4.268 6 S 0.077 5.923 7 C -0.693 4.693 8 H 0.102 0.898 9 C -0.191 4.191 10 N -0.548 5.548 11 Si 0.821 3.179 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.180 1.180 15 C 0.170 3.830 16 H 0.112 0.888 17 C -0.064 4.064 18 N -0.284 5.284 19 C -0.017 4.017 20 N -0.192 5.192 21 H 0.308 0.692 22 N -0.172 5.172 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.133 4.133 27 C -0.144 4.144 28 C -0.123 4.123 29 H 0.085 0.915 30 H 0.148 0.852 31 H 0.091 0.909 32 H 0.127 0.873 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.296 0.704 36 H 0.134 0.866 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.168 0.832 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.197 -26.773 0.962 28.665 hybrid contribution -1.124 0.690 0.786 1.535 sum -11.321 -26.083 1.749 28.488 Atomic orbital electron populations 1.22622 0.76689 1.06654 1.02804 1.47676 1.08667 1.02968 1.73120 1.20302 0.87360 0.85377 0.74833 1.90669 1.15591 1.87320 1.50466 1.23318 1.02644 0.94395 1.06489 1.85595 1.12549 0.97148 1.97032 1.23194 0.94631 0.92544 1.58948 0.89831 1.26148 0.97627 1.01670 0.93656 1.70193 1.14172 1.22476 1.48003 0.84934 0.77891 0.76211 0.78815 1.19265 1.20278 1.18043 1.17633 0.97065 0.80887 0.87371 0.88778 1.23954 0.88211 0.97541 0.96742 1.70100 1.21171 1.21661 1.15466 1.27228 0.90609 0.91234 0.92590 1.48022 1.05610 1.40254 1.25269 0.69181 1.77960 1.19186 1.16272 1.03793 1.19753 0.95356 1.00655 0.95477 1.21217 0.98686 0.98548 0.95515 1.21381 0.98253 0.98752 0.96245 1.21583 0.92336 0.99121 1.00263 1.21517 1.00723 0.97908 0.94211 1.21551 0.95778 0.97328 0.97643 0.91471 0.85244 0.90945 0.87269 0.87411 0.91991 0.70407 0.86633 0.84036 0.83249 0.83170 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.28 7.84 127.77 1.00 2.28 16 2 N -0.59 -19.14 2.74 -831.05 -2.28 -21.42 16 3 C 0.53 22.39 7.69 87.65 0.67 23.06 16 4 O -0.56 -28.50 15.19 -3.03 -0.05 -28.55 16 5 C -0.12 -5.06 4.78 71.23 0.34 -4.71 16 6 S -0.15 -8.69 20.57 -56.49 -1.16 -9.85 16 7 C -0.55 -31.83 9.50 67.95 0.65 -31.19 16 8 H 0.08 4.52 7.80 -2.91 -0.02 4.50 16 9 C 0.01 0.79 5.49 84.86 0.47 1.25 16 10 N -0.91 -56.98 13.22 21.65 0.29 -56.69 16 11 Si 1.00 44.15 29.55 68.60 2.03 46.17 16 12 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 15 C 0.28 8.64 2.90 43.50 0.13 8.77 16 16 H 0.09 3.53 6.65 -2.39 -0.02 3.51 16 17 C 0.22 5.95 6.67 138.64 0.92 6.88 16 18 N -0.55 -11.21 8.06 -191.80 -1.55 -12.75 16 19 C 0.28 3.15 13.13 180.36 2.37 5.52 16 20 N -0.47 -6.73 7.45 -60.49 -0.45 -7.18 16 21 H 0.46 2.81 8.96 -213.10 -1.91 0.90 16 22 N -0.34 -9.04 12.80 -51.33 -0.66 -9.70 16 23 C -0.11 -2.99 4.95 -19.86 -0.10 -3.09 16 24 C -0.12 -3.17 9.67 22.27 0.22 -2.95 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.43 16 26 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 28 C -0.11 -2.31 8.29 22.27 0.18 -2.13 16 29 H 0.07 1.43 7.55 -2.38 -0.02 1.41 16 30 H 0.13 2.69 3.81 -2.39 -0.01 2.68 16 31 H 0.07 1.68 6.68 -2.39 -0.02 1.67 16 32 H 0.11 4.28 8.10 -2.40 -0.02 4.26 16 33 H 0.11 4.23 7.42 -2.40 -0.02 4.21 16 34 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 35 H 0.28 -0.54 8.06 -2.91 -0.02 -0.56 16 36 H 0.12 3.09 7.95 -2.91 -0.02 3.07 16 37 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.15 1.68 8.06 -2.91 -0.02 1.66 16 39 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 40 H 0.14 2.84 4.72 -2.91 -0.01 2.83 16 Total: -1.00 -88.06 352.16 2.88 -85.18 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.81 Total: 17.33 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 7.52 Total: -2.54 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -4.65 Total: -107.75 kcal Atomic # 8 Polarization: -28.50 SS G_CDS: -0.05 Total: -28.55 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -88.06 2.88 -85.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909476305.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.936 kcal (2) G-P(sol) polarization free energy of solvation -88.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds