Wall clock time and date at job start Tue Mar 31 2020 16:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36756 * 127.14122 * 2 1 4 4 N 1.30306 * 107.31801 * 179.88889 * 3 2 1 5 5 N 1.28524 * 110.07715 * 0.38203 * 4 3 2 6 6 C 1.31292 * 109.85410 * 359.75622 * 5 4 3 7 7 S 1.76199 * 126.48094 * 180.02562 * 6 5 4 8 8 C 1.81008 * 100.00034 * 359.95690 * 7 6 5 9 9 C 1.50701 * 109.47191 * 180.02562 * 8 7 6 10 10 O 1.21289 * 119.99451 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00308 * 179.97438 * 9 8 7 12 12 C 1.39923 * 120.00729 * 175.37476 * 11 9 8 13 13 C 1.38865 * 120.07366 * 214.81477 * 12 11 9 14 14 C 1.38114 * 119.92444 * 179.74519 * 13 12 11 15 15 C 1.38275 * 120.07383 * 0.52515 * 14 13 12 16 16 C 1.50707 * 119.92917 * 179.72313 * 15 14 13 17 17 C 1.50699 * 109.47043 * 270.01769 * 16 15 14 18 18 H 1.07996 * 120.00211 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99958 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00277 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00353 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47135 * 59.99928 * 21 19 17 23 23 H 1.48499 * 109.47493 * 180.02562 * 21 19 17 24 24 H 1.48504 * 109.46863 * 300.00324 * 21 19 17 25 25 C 1.38279 * 120.14186 * 359.74594 * 15 14 13 26 26 C 1.38112 * 120.07050 * 359.97438 * 25 15 14 27 27 H 1.09004 * 109.47642 * 269.68393 * 1 2 3 28 28 H 1.09003 * 109.46854 * 149.68873 * 1 2 3 29 29 H 1.08993 * 109.47331 * 29.68492 * 1 2 3 30 30 H 1.08002 * 126.34340 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46638 * 299.99780 * 8 7 6 32 32 H 1.09000 * 109.46808 * 59.99707 * 8 7 6 33 33 H 0.97005 * 120.00049 * 355.37281 * 11 9 8 34 34 H 1.08002 * 120.03721 * 0.02562 * 13 12 11 35 35 H 1.08002 * 119.96208 * 180.26755 * 14 13 12 36 36 H 1.08997 * 109.47170 * 30.02314 * 16 15 14 37 37 H 1.09006 * 109.46987 * 150.02479 * 16 15 14 38 38 H 0.96999 * 120.00901 * 179.97438 * 20 19 17 39 39 H 1.08003 * 119.96615 * 179.97438 * 25 15 14 40 40 H 1.07998 * 120.03972 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0901 0.0000 4 7 3.5165 0.6483 0.0024 5 7 3.5222 -0.6370 -0.0041 6 6 2.2894 -1.0883 -0.0059 7 16 1.7927 -2.7789 -0.0136 8 6 3.4144 -3.5829 -0.0192 9 6 3.2333 -5.0790 -0.0269 10 8 2.1177 -5.5547 -0.0280 11 7 4.3110 -5.8882 -0.0326 12 6 4.1455 -7.2747 0.0579 13 6 5.0757 -8.0431 0.7453 14 6 4.9065 -9.4108 0.8373 15 6 3.8182 -10.0162 0.2365 16 6 3.6401 -11.5096 0.3336 17 6 4.3331 -12.1746 -0.8276 18 1 4.8510 -11.5759 -1.5622 19 6 4.3068 -13.5475 -0.9517 20 7 3.6765 -14.2767 -0.0569 21 14 5.1664 -14.3721 -2.3907 22 1 6.6140 -14.0426 -2.3574 23 1 4.9908 -15.8435 -2.2952 24 1 4.5772 -13.8854 -3.6640 25 6 2.8931 -9.2545 -0.4535 26 6 3.0534 -7.8857 -0.5442 27 1 -0.3634 -0.0057 1.0276 28 1 -0.3633 -0.8872 -0.5187 29 1 -0.3633 0.8927 -0.5089 30 1 1.9837 2.1256 -0.0004 31 1 3.9672 -3.2796 -0.9083 32 1 3.9690 -3.2882 0.8717 33 1 5.2016 -5.5095 -0.0995 34 1 5.9281 -7.5713 1.2114 35 1 5.6273 -10.0085 1.3754 36 1 4.0726 -11.8671 1.2681 37 1 2.5774 -11.7511 0.3092 38 1 3.6576 -15.2426 -0.1443 39 1 2.0443 -9.7304 -0.9219 40 1 2.3303 -7.2913 -1.0829 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928406356.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:54 Heat of formation + Delta-G solvation = 73.268190 kcal Electronic energy + Delta-G solvation = -23734.691219 eV Core-core repulsion = 20063.364549 eV Total energy + Delta-G solvation = -3671.326670 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 332.105 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.26758 -40.44798 -38.23697 -35.48083 -35.03026 -33.09904 -31.56200 -30.95981 -30.35282 -29.65005 -28.17324 -26.48031 -23.50867 -23.09545 -22.77752 -22.42975 -21.02674 -20.11904 -18.65523 -17.57221 -17.16733 -16.88092 -16.59976 -16.30251 -15.93708 -15.64867 -15.00450 -14.53931 -14.25466 -14.23220 -14.17444 -14.01462 -13.53132 -13.25167 -13.01130 -12.83212 -12.56317 -12.11590 -12.02590 -11.46846 -11.41206 -11.29674 -10.87114 -10.80876 -10.71420 -10.64359 -10.50330 -10.42593 -10.19825 -9.92899 -9.46275 -9.32170 -8.42281 -8.32697 -8.10726 -7.46642 -6.03734 -4.08011 0.49612 1.16977 1.47186 1.74172 2.02387 2.12223 2.37193 2.47621 2.95311 3.32153 3.36371 3.39457 3.99215 4.11680 4.26622 4.38330 4.46386 4.53294 4.59441 4.67717 4.76718 4.89557 5.14330 5.30076 5.39381 5.46275 5.53796 5.85164 5.99514 6.06081 6.16311 6.19118 6.61098 6.69325 6.81739 7.13201 7.17360 7.33036 7.49826 7.65535 7.84750 7.91665 7.94193 8.15412 8.31765 8.96990 9.55729 11.05807 Molecular weight = 332.10amu Principal moments of inertia in cm(-1) A = 0.036131 B = 0.001809 C = 0.001782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.768799 B =15476.518688 C =15705.551202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.468 5.468 3 C 0.158 3.842 4 N -0.288 5.288 5 N -0.297 5.297 6 C 0.140 3.860 7 S 0.086 5.914 8 C -0.145 4.145 9 C 0.529 3.471 10 O -0.509 6.509 11 N -0.657 5.657 12 C 0.098 3.902 13 C -0.138 4.138 14 C -0.109 4.109 15 C -0.038 4.038 16 C 0.047 3.953 17 C -0.512 4.512 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.110 4.110 26 C -0.115 4.115 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.223 0.777 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.410 0.590 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.263 0.737 39 H 0.122 0.878 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 30.470 1.061 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.162 5.162 3 C -0.132 4.132 4 N -0.127 5.127 5 N -0.142 5.142 6 C -0.234 4.234 7 S 0.313 5.687 8 C -0.297 4.297 9 C 0.313 3.687 10 O -0.384 6.384 11 N -0.302 5.302 12 C 0.006 3.994 13 C -0.159 4.159 14 C -0.128 4.128 15 C -0.039 4.039 16 C 0.010 3.990 17 C -0.550 4.550 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.128 4.128 26 C -0.135 4.135 27 H 0.106 0.894 28 H 0.113 0.887 29 H 0.116 0.884 30 H 0.240 0.760 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.245 0.755 34 H 0.134 0.866 35 H 0.141 0.859 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.601 29.526 1.125 30.073 hybrid contribution 0.801 0.499 -0.797 1.235 sum -4.799 30.024 0.328 30.407 Atomic orbital electron populations 1.22213 0.74538 1.05702 1.04760 1.46515 1.09096 1.05243 1.55302 1.26757 0.86503 0.94778 1.05148 1.73923 1.18387 1.03089 1.17279 1.74684 1.15553 1.03404 1.20534 1.27371 0.90497 0.97449 1.08125 1.86229 1.06247 0.83736 1.92537 1.23689 1.00619 0.95507 1.09880 1.19602 0.85204 0.86942 0.76936 1.90777 1.23814 1.75974 1.47835 1.43145 1.09384 1.05244 1.72421 1.17497 0.98939 0.80883 1.02120 1.20760 0.99750 0.94484 1.00857 1.20900 0.98255 0.93015 1.00617 1.20757 0.92095 0.98755 0.92293 1.18364 0.98153 0.84536 0.97913 1.21018 1.33771 0.91298 1.08961 0.92499 1.25013 0.95512 0.97421 0.96383 1.69944 1.42588 1.05801 1.34935 0.86596 0.80106 0.78178 0.82786 1.20183 1.21246 1.20175 1.21027 0.99892 0.92412 0.99505 1.21123 0.97781 0.94860 0.99696 0.89386 0.88661 0.88432 0.76036 0.85351 0.85291 0.75493 0.86645 0.85888 0.95260 0.95239 0.92780 0.85984 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.19 11.09 59.85 0.66 0.86 16 2 N -0.47 -3.28 3.21 -125.58 -0.40 -3.69 16 3 C 0.16 1.12 12.80 -88.95 -1.14 -0.01 16 4 N -0.29 -3.27 12.18 29.90 0.36 -2.90 16 5 N -0.30 -3.54 11.60 30.68 0.36 -3.19 16 6 C 0.14 1.38 8.07 -88.34 -0.71 0.66 16 7 S 0.09 0.81 20.94 -107.50 -2.25 -1.45 16 8 C -0.15 -1.28 5.72 36.01 0.21 -1.08 16 9 C 0.53 6.34 7.69 -10.99 -0.08 6.25 16 10 O -0.51 -7.95 13.30 5.55 0.07 -7.87 16 11 N -0.66 -7.66 5.34 -9.86 -0.05 -7.71 16 12 C 0.10 1.54 6.30 -83.69 -0.53 1.01 16 13 C -0.14 -2.18 9.97 -39.39 -0.39 -2.57 16 14 C -0.11 -2.06 9.69 -39.61 -0.38 -2.45 16 15 C -0.04 -0.83 5.07 -104.59 -0.53 -1.36 16 16 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 17 C -0.51 -14.24 9.09 -34.44 -0.31 -14.56 16 18 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 21 Si 0.90 21.46 29.54 -169.99 -5.02 16.43 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.11 -2.20 9.69 -39.61 -0.38 -2.58 16 26 C -0.11 -2.05 8.70 -39.39 -0.34 -2.40 16 27 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.09 0.27 7.86 -51.93 -0.41 -0.14 16 29 H 0.10 0.01 8.14 -51.93 -0.42 -0.42 16 30 H 0.22 0.48 8.06 -52.49 -0.42 0.06 16 31 H 0.13 0.96 8.14 -51.92 -0.42 0.54 16 32 H 0.13 0.99 8.14 -51.92 -0.42 0.56 16 33 H 0.41 3.28 8.82 -40.82 -0.36 2.92 16 34 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 2.23 8.06 -52.49 -0.42 1.80 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 40 H 0.13 2.26 6.22 -52.49 -0.33 1.94 16 LS Contribution 365.08 15.07 5.50 5.50 Total: -1.00 -36.09 365.08 -9.74 -45.83 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.86 Total: 0.23 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -4.19 Total: -15.62 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 1.00 Total: -43.05 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.07 Total: -7.87 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.25 Total: -1.45 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.09 -9.74 -45.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928406356.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.100 kcal (2) G-P(sol) polarization free energy of solvation -36.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds