Wall clock time and date at job start Tue Mar 31 2020 16:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 109.47448 * 2 1 4 4 C 1.35684 * 116.99863 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.68099 * 180.02562 * 4 3 2 6 6 C 1.38385 * 119.10942 * 179.97438 * 5 4 3 7 7 C 1.38828 * 118.48401 * 359.73274 * 6 5 4 8 8 C 1.38046 * 119.28559 * 0.52977 * 7 6 5 9 9 C 1.50701 * 119.57797 * 179.73330 * 8 7 6 10 10 C 1.50703 * 109.47355 * 124.72753 * 9 8 7 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.50701 * 109.47114 * 154.72036 * 13 12 10 16 16 H 1.07995 * 120.00006 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00190 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00189 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47151 * 120.00429 * 19 17 15 22 22 H 1.48503 * 109.46944 * 240.00418 * 19 17 15 23 23 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 24 24 F 1.39901 * 109.47352 * 60.00121 * 23 13 12 25 25 F 1.39894 * 109.47202 * 180.02562 * 23 13 12 26 26 F 1.39903 * 109.47248 * 300.00283 * 23 13 12 27 27 N 1.31956 * 120.83727 * 359.45485 * 8 7 6 28 28 H 1.08990 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46619 * 300.00441 * 1 2 3 30 30 H 1.08996 * 109.46619 * 59.99676 * 1 2 3 31 31 H 1.09004 * 109.46619 * 239.99559 * 2 1 3 32 32 H 1.08995 * 109.47051 * 120.00634 * 2 1 3 33 33 H 1.08004 * 120.45017 * 359.94976 * 5 4 3 34 34 H 1.08004 * 120.75870 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.35338 * 180.25552 * 7 6 5 36 36 H 1.08998 * 109.47477 * 4.72599 * 9 8 7 37 37 H 1.09002 * 109.47412 * 244.72858 * 9 8 7 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 0.96995 * 120.00431 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5248 -0.0005 5 6 3.8755 2.8114 0.0000 6 6 5.2492 2.9789 0.0000 7 6 6.0541 1.8478 0.0051 8 6 5.4647 0.5995 -0.0011 9 6 6.3322 -0.6327 -0.0016 10 6 5.9551 -1.5131 1.1619 11 8 5.0694 -1.1731 1.9175 12 7 6.6027 -2.6778 1.3634 13 6 6.2320 -3.5365 2.4910 14 1 5.1576 -3.4680 2.6621 15 6 6.6009 -4.9637 2.1781 16 1 7.0654 -5.2068 1.2339 17 6 6.3462 -5.9591 3.0975 18 7 5.7810 -5.6630 4.2476 19 14 6.8041 -7.7281 2.7099 20 1 7.4216 -7.7954 1.3611 21 1 7.7710 -8.2225 3.7228 22 1 5.5831 -8.5728 2.7375 23 6 6.9783 -3.0803 3.7463 24 9 6.6358 -1.7553 4.0369 25 9 6.6247 -3.9006 4.8230 26 9 8.3572 -3.1681 3.5269 27 7 4.1513 0.4716 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2196 3.6695 0.0000 34 1 5.6851 3.9671 0.0008 35 1 7.1298 1.9435 0.0094 36 1 7.3785 -0.3406 0.0880 37 1 6.1862 -1.1795 -0.9332 38 1 7.3113 -2.9495 0.7593 39 1 5.6015 -6.3632 4.8943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928803969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:28 Heat of formation + Delta-G solvation = -178.185238 kcal Electronic energy + Delta-G solvation = -29277.150683 eV Core-core repulsion = 24578.017812 eV Total energy + Delta-G solvation = -4699.132871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.34461 -46.00034 -45.60854 -40.63514 -38.93771 -37.83354 -34.64962 -32.99673 -32.56068 -32.14534 -30.99986 -28.92980 -27.26890 -24.57396 -23.94733 -22.80081 -22.18121 -21.29731 -19.80309 -18.20214 -17.59191 -16.87426 -16.66639 -16.55537 -16.33869 -16.08307 -15.95558 -15.67884 -14.89892 -14.56187 -14.38302 -13.95699 -13.76722 -13.61752 -12.99604 -12.98849 -12.90582 -12.55012 -12.48566 -12.39913 -12.31905 -12.26414 -11.98051 -11.97481 -11.83480 -11.75548 -11.43518 -11.17017 -10.87203 -10.75387 -10.62513 -10.40762 -9.78826 -9.64198 -9.46766 -9.16241 -8.73149 -8.36018 -8.22544 -6.24143 -4.47982 1.17817 1.38184 3.11145 3.16840 3.24015 3.27543 3.28339 3.66477 4.01652 4.18688 4.21609 4.57548 4.74280 4.92846 5.01997 5.07408 5.10228 5.13024 5.21738 5.34879 5.44708 5.48769 5.50092 5.75063 5.78433 5.86906 5.88605 5.90688 5.94441 6.07769 6.19572 6.22969 6.48169 6.95473 7.19966 7.35974 7.47719 7.62976 8.03324 8.34584 8.50434 8.93739 9.20153 10.67514 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014946 B = 0.003590 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.010913 B = 7796.590711 C = 8635.726021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.065 3.935 3 O -0.311 6.311 4 C 0.327 3.673 5 C -0.200 4.200 6 C -0.043 4.043 7 C -0.208 4.208 8 C 0.193 3.807 9 C -0.096 4.096 10 C 0.511 3.489 11 O -0.519 6.519 12 N -0.714 5.714 13 C 0.246 3.754 14 H 0.084 0.916 15 C -0.551 4.551 16 H 0.078 0.922 17 C 0.064 3.936 18 N -0.840 5.840 19 Si 0.915 3.085 20 H -0.270 1.270 21 H -0.280 1.280 22 H -0.280 1.280 23 C 0.417 3.583 24 F -0.218 7.218 25 F -0.137 7.137 26 F -0.210 7.210 27 N -0.508 5.508 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.136 0.864 36 H 0.108 0.892 37 H 0.111 0.889 38 H 0.398 0.602 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.270 12.055 -10.217 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.010 4.010 3 O -0.219 6.219 4 C 0.147 3.853 5 C -0.220 4.220 6 C -0.069 4.069 7 C -0.229 4.229 8 C 0.055 3.945 9 C -0.137 4.137 10 C 0.295 3.705 11 O -0.393 6.393 12 N -0.365 5.365 13 C 0.141 3.859 14 H 0.102 0.898 15 C -0.588 4.588 16 H 0.096 0.904 17 C -0.145 4.145 18 N -0.473 5.473 19 Si 0.741 3.259 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.360 3.640 24 F -0.200 7.200 25 F -0.118 7.118 26 F -0.192 7.192 27 N -0.231 5.231 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.154 0.846 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.232 0.768 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.610 11.575 -9.429 15.156 hybrid contribution 1.202 -0.373 -0.040 1.259 sum -1.408 11.202 -9.469 14.735 Atomic orbital electron populations 1.21808 0.93291 1.02876 1.02844 1.22617 0.94358 0.80846 1.03195 1.86177 1.16925 1.30993 1.87764 1.19740 0.84101 0.89717 0.91694 1.21003 0.95870 0.95658 1.09511 1.21293 0.92316 0.99146 0.94097 1.21744 1.01279 0.92546 1.07303 1.20220 0.88664 0.93536 0.92070 1.20690 0.99463 0.93559 0.99957 1.20133 0.82594 0.81844 0.85954 1.90730 1.30026 1.72188 1.46406 1.46038 1.38808 1.20600 1.31037 1.19685 0.97191 0.89935 0.79115 0.89838 1.20920 1.44459 0.88754 1.04640 0.90404 1.25093 0.94625 1.00381 0.94353 1.70415 1.37846 1.32812 1.06238 0.86166 0.78294 0.82750 0.78661 1.19390 1.20579 1.20584 1.23166 0.77347 0.73422 0.90031 1.93070 1.92143 1.39823 1.94971 1.93402 1.90856 1.69655 1.57929 1.92984 1.34841 1.96081 1.95276 1.67066 1.05842 1.32945 1.17259 0.90288 0.91769 0.92031 0.91783 0.90780 0.84494 0.84303 0.84607 0.87338 0.87094 0.76846 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.07 0.91 6.03 37.16 0.22 1.13 16 3 O -0.31 -4.69 10.12 -18.76 -0.19 -4.88 16 4 C 0.33 5.10 7.49 -17.12 -0.13 4.97 16 5 C -0.20 -2.51 10.04 -39.28 -0.39 -2.91 16 6 C -0.04 -0.47 10.17 -39.31 -0.40 -0.87 16 7 C -0.21 -2.51 9.70 -39.43 -0.38 -2.89 16 8 C 0.19 2.89 5.76 -82.61 -0.48 2.41 16 9 C -0.10 -1.31 6.10 -29.03 -0.18 -1.49 16 10 C 0.51 9.85 7.30 -10.98 -0.08 9.77 16 11 O -0.52 -12.26 13.91 5.55 0.08 -12.19 16 12 N -0.71 -14.18 4.98 -54.93 -0.27 -14.45 16 13 C 0.25 6.08 2.21 -69.08 -0.15 5.92 16 14 H 0.08 2.33 7.57 -51.93 -0.39 1.94 16 15 C -0.55 -13.90 8.47 -34.44 -0.29 -14.19 16 16 H 0.08 1.85 7.74 -52.49 -0.41 1.44 16 17 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 18 N -0.84 -23.04 9.50 55.43 0.53 -22.51 16 19 Si 0.91 19.97 29.54 -169.99 -5.02 14.95 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 C 0.42 10.69 2.81 37.16 0.10 10.79 16 24 F -0.22 -5.59 15.69 2.25 0.04 -5.56 16 25 F -0.14 -3.83 12.91 2.25 0.03 -3.80 16 26 F -0.21 -5.13 16.94 2.25 0.04 -5.10 16 27 N -0.51 -8.62 8.08 -9.55 -0.08 -8.70 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 33 H 0.14 1.39 8.06 -52.48 -0.42 0.97 16 34 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 35 H 0.14 1.24 7.94 -52.49 -0.42 0.82 16 36 H 0.11 1.12 7.86 -51.93 -0.41 0.71 16 37 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.40 6.61 8.54 -40.82 -0.35 6.26 16 39 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 347.41 15.07 5.24 5.24 Total: -1.00 -32.60 347.41 -5.97 -38.57 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.49 Total: 5.41 kcal Atomic # 6 Polarization: 14.87 SS G_CDS: -1.86 Total: 13.01 kcal Atomic # 7 Polarization: -45.84 SS G_CDS: 0.18 Total: -45.66 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.11 Total: -17.07 kcal Atomic # 9 Polarization: -14.55 SS G_CDS: 0.10 Total: -14.45 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.60 -5.97 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.613 kcal (2) G-P(sol) polarization free energy of solvation -32.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds