Wall clock time and date at job start Tue Mar 31 2020 16:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42892 * 109.47448 * 2 1 4 4 C 1.35684 * 116.99863 * 180.02562 * 3 2 1 5 5 C 1.38915 * 119.68099 * 180.02562 * 4 3 2 6 6 C 1.38385 * 119.10942 * 179.97438 * 5 4 3 7 7 C 1.38828 * 118.48401 * 359.73274 * 6 5 4 8 8 C 1.38046 * 119.28559 * 0.52977 * 7 6 5 9 9 C 1.50701 * 119.57797 * 179.73330 * 8 7 6 10 10 C 1.50703 * 109.47355 * 124.72753 * 9 8 7 11 11 O 1.21283 * 119.99488 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00290 * 180.02562 * 10 9 8 13 13 C 1.46498 * 119.99828 * 180.27728 * 12 10 9 14 14 H 1.09004 * 109.47372 * 34.71852 * 13 12 10 15 15 C 1.50701 * 109.47114 * 154.72036 * 13 12 10 16 16 H 1.07995 * 120.00006 * 0.02562 * 15 13 12 17 17 C 1.37875 * 120.00190 * 179.97438 * 15 13 12 18 18 N 1.31520 * 119.99966 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00189 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47195 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47151 * 120.00429 * 19 17 15 22 22 H 1.48503 * 109.46944 * 240.00418 * 19 17 15 23 23 C 1.52997 * 109.47036 * 274.72131 * 13 12 10 24 24 F 1.39901 * 109.47352 * 60.00121 * 23 13 12 25 25 F 1.39894 * 109.47202 * 180.02562 * 23 13 12 26 26 F 1.39903 * 109.47248 * 300.00283 * 23 13 12 27 27 N 1.31956 * 120.83727 * 359.45485 * 8 7 6 28 28 H 1.08990 * 109.47378 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46619 * 300.00441 * 1 2 3 30 30 H 1.08996 * 109.46619 * 59.99676 * 1 2 3 31 31 H 1.09004 * 109.46619 * 239.99559 * 2 1 3 32 32 H 1.08995 * 109.47051 * 120.00634 * 2 1 3 33 33 H 1.08004 * 120.45017 * 359.94976 * 5 4 3 34 34 H 1.08004 * 120.75870 * 180.02562 * 6 5 4 35 35 H 1.08002 * 120.35338 * 180.25552 * 7 6 5 36 36 H 1.08998 * 109.47477 * 4.72599 * 9 8 7 37 37 H 1.09002 * 109.47412 * 244.72858 * 9 8 7 38 38 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 39 39 H 0.96995 * 120.00431 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3516 1.5248 -0.0005 5 6 3.8755 2.8114 0.0000 6 6 5.2492 2.9789 0.0000 7 6 6.0541 1.8478 0.0051 8 6 5.4647 0.5995 -0.0011 9 6 6.3322 -0.6327 -0.0016 10 6 5.9551 -1.5131 1.1619 11 8 5.0694 -1.1731 1.9175 12 7 6.6027 -2.6778 1.3634 13 6 6.2320 -3.5365 2.4910 14 1 5.1576 -3.4680 2.6621 15 6 6.6009 -4.9637 2.1781 16 1 7.0654 -5.2068 1.2339 17 6 6.3462 -5.9591 3.0975 18 7 5.7810 -5.6630 4.2476 19 14 6.8041 -7.7281 2.7099 20 1 7.4216 -7.7954 1.3611 21 1 7.7710 -8.2225 3.7228 22 1 5.5831 -8.5728 2.7375 23 6 6.9783 -3.0803 3.7463 24 9 6.6358 -1.7553 4.0369 25 9 6.6247 -3.9006 4.8230 26 9 8.3572 -3.1681 3.5269 27 7 4.1513 0.4716 -0.0010 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2196 3.6695 0.0000 34 1 5.6851 3.9671 0.0008 35 1 7.1298 1.9435 0.0094 36 1 7.3785 -0.3406 0.0880 37 1 6.1862 -1.1795 -0.9332 38 1 7.3113 -2.9495 0.7593 39 1 5.6015 -6.3632 4.8943 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928803969.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:27 Heat of formation + Delta-G solvation = -201.235421 kcal Electronic energy + Delta-G solvation = -29278.150214 eV Core-core repulsion = 24578.017812 eV Total energy + Delta-G solvation = -4700.132402 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.113 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.42026 -48.05329 -47.73372 -41.69566 -40.42555 -38.95762 -36.45732 -34.46040 -34.02925 -33.13839 -32.11625 -30.51743 -28.57493 -26.58371 -24.98467 -24.05392 -23.41253 -22.79712 -21.41908 -19.40195 -19.25599 -18.85766 -18.66074 -18.29825 -17.51805 -17.46275 -17.18828 -16.85454 -16.77860 -15.93328 -15.86520 -15.08456 -15.00292 -14.95511 -14.90007 -14.63917 -14.47484 -14.34322 -14.25434 -14.02910 -13.89627 -13.84555 -13.44385 -13.41939 -13.03894 -12.96102 -12.79684 -12.67061 -12.61020 -12.45081 -12.19977 -11.70841 -11.54530 -10.85622 -10.74439 -10.69966 -10.44216 -10.00954 -9.37727 -8.21396 -6.52178 0.17320 0.43572 1.45645 1.46801 1.59943 1.76560 2.10328 2.21881 2.40109 2.54520 2.89222 2.94507 3.15259 3.75172 3.81893 3.85595 3.99295 4.03003 4.08017 4.18096 4.20700 4.26213 4.39179 4.43811 4.53308 4.56100 4.78810 4.84444 4.91194 4.96031 5.05507 5.17229 5.27231 5.45389 5.56737 5.59566 5.66053 6.28908 6.53633 6.79326 7.00932 7.17890 7.45977 8.71563 Molecular weight = 332.11amu Principal moments of inertia in cm(-1) A = 0.014946 B = 0.003590 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.010913 B = 7796.590711 C = 8635.726021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 O -0.320 6.320 4 C 0.290 3.710 5 C -0.200 4.200 6 C -0.037 4.037 7 C -0.200 4.200 8 C 0.157 3.843 9 C -0.083 4.083 10 C 0.504 3.496 11 O -0.569 6.569 12 N -0.707 5.707 13 C 0.254 3.746 14 H 0.039 0.961 15 C -0.558 4.558 16 H 0.094 0.906 17 C 0.013 3.987 18 N -0.877 5.877 19 Si 0.983 3.017 20 H -0.253 1.253 21 H -0.281 1.281 22 H -0.279 1.279 23 C 0.414 3.586 24 F -0.220 7.220 25 F -0.153 7.153 26 F -0.201 7.201 27 N -0.545 5.545 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.159 0.841 34 H 0.183 0.817 35 H 0.172 0.828 36 H 0.151 0.849 37 H 0.134 0.866 38 H 0.415 0.585 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.505 13.034 -12.200 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.007 4.007 3 O -0.228 6.228 4 C 0.111 3.889 5 C -0.220 4.220 6 C -0.062 4.062 7 C -0.220 4.220 8 C 0.021 3.979 9 C -0.123 4.123 10 C 0.291 3.709 11 O -0.446 6.446 12 N -0.359 5.359 13 C 0.146 3.854 14 H 0.057 0.943 15 C -0.595 4.595 16 H 0.112 0.888 17 C -0.192 4.192 18 N -0.511 5.511 19 Si 0.807 3.193 20 H -0.176 1.176 21 H -0.207 1.207 22 H -0.205 1.205 23 C 0.358 3.642 24 F -0.202 7.202 25 F -0.134 7.134 26 F -0.183 7.183 27 N -0.269 5.269 28 H 0.110 0.890 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.176 0.824 34 H 0.201 0.799 35 H 0.189 0.811 36 H 0.168 0.832 37 H 0.152 0.848 38 H 0.252 0.748 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.799 12.568 -11.460 17.027 hybrid contribution 0.668 -0.578 0.593 1.063 sum -0.131 11.990 -10.867 16.182 Atomic orbital electron populations 1.21796 0.90541 1.03993 1.03618 1.22573 0.96457 0.80583 1.01072 1.86160 1.17389 1.31055 1.88181 1.20226 0.84126 0.90880 0.93677 1.21409 0.97311 0.95007 1.08304 1.21845 0.91388 1.00882 0.92055 1.22185 1.03226 0.91554 1.05016 1.20615 0.88308 0.95195 0.93824 1.20754 1.01398 0.92317 0.97782 1.21191 0.81311 0.81612 0.86770 1.90713 1.32109 1.73187 1.48634 1.45905 1.39483 1.20497 1.30051 1.19224 0.94656 0.91088 0.80408 0.94286 1.21283 1.44107 0.88931 1.05189 0.88755 1.26033 0.94370 1.04729 0.94103 1.70554 1.39137 1.34082 1.07374 0.85110 0.77852 0.77329 0.79028 1.17614 1.20706 1.20515 1.23314 0.77806 0.73104 0.89998 1.93060 1.92230 1.39942 1.95018 1.93371 1.91080 1.70180 1.58780 1.92985 1.34079 1.96040 1.95192 1.66966 1.07265 1.34336 1.18312 0.89004 0.91698 0.90433 0.92301 0.94506 0.82378 0.79943 0.81055 0.83163 0.84779 0.74761 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 10.28 71.98 0.74 -2.30 16 2 C 0.07 2.05 6.03 71.98 0.43 2.48 16 3 O -0.32 -10.03 10.12 -90.03 -0.91 -10.94 16 4 C 0.29 9.18 7.49 84.79 0.63 9.82 16 5 C -0.20 -4.72 10.04 22.47 0.23 -4.49 16 6 C -0.04 -0.67 10.17 22.45 0.23 -0.45 16 7 C -0.20 -4.16 9.70 22.37 0.22 -3.94 16 8 C 0.16 4.51 5.76 42.49 0.24 4.75 16 9 C -0.08 -2.09 6.10 29.10 0.18 -1.91 16 10 C 0.50 19.42 7.30 87.66 0.64 20.06 16 11 O -0.57 -27.95 13.91 -3.04 -0.04 -27.99 16 12 N -0.71 -27.83 4.98 -446.09 -2.22 -30.06 16 13 C 0.25 12.78 2.21 44.24 0.10 12.88 16 14 H 0.04 2.32 7.57 -2.39 -0.02 2.30 16 15 C -0.56 -28.10 8.47 25.60 0.22 -27.88 16 16 H 0.09 4.33 7.74 -2.91 -0.02 4.30 16 17 C 0.01 0.65 5.20 84.65 0.44 1.09 16 18 N -0.88 -49.25 9.50 21.45 0.20 -49.05 16 19 Si 0.98 40.54 29.54 68.60 2.03 42.56 16 20 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 23 C 0.41 21.61 2.81 71.98 0.20 21.81 16 24 F -0.22 -11.55 15.69 44.97 0.71 -10.85 16 25 F -0.15 -8.77 12.91 44.97 0.58 -8.19 16 26 F -0.20 -9.74 16.94 44.97 0.76 -8.98 16 27 N -0.55 -18.87 8.08 -297.00 -2.40 -21.27 16 28 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.06 1.36 8.14 -2.38 -0.02 1.35 16 30 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.75 8.10 -2.38 -0.02 1.73 16 32 H 0.04 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.17 2.24 7.94 -2.91 -0.02 2.21 16 36 H 0.15 2.48 7.86 -2.39 -0.02 2.46 16 37 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 38 H 0.42 13.10 8.54 -92.71 -0.79 12.31 16 39 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -75.12 347.41 3.52 -71.61 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.31 Total: 21.23 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: 4.50 Total: 31.91 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.42 Total: -100.37 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.95 Total: -38.93 kcal Atomic # 9 Polarization: -30.06 SS G_CDS: 2.05 Total: -28.01 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.56 kcal Total: -75.12 3.52 -71.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928803969.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.628 kcal (2) G-P(sol) polarization free energy of solvation -75.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds